C. Jongeneel

发表

Knowledge-guided analysis of "omics" data using the KnowEnG cloud platform

Jiawei Han, Saurabh Sinha, Omar N Sobh, 2019, bioRxiv.

Single-cell PCR analysis of TCR repertoires selected by antigen in vivo: a high magnitude CD8 response is comprised of very few clones.

C V Jongeneel, P Bucher, P. Bucher, 1996, Immunity.

Nucleotide sequence of the murine TNF locus, including the TNF-α (tumor necrosis factor) and TNF-β (lymphotoxin) genes

Sergei A. Nedospasov, E. Kawashima, C. Jongeneel, 1987 .

Studies on DNA replication in the bacteriophage T4 in vitro system.

B. Alberts, T. Formosa, C. Jongeneel, 1983, Cold Spring Harbor symposia on quantitative biology.

Escherichia coli phage T4 topoisomerase.

C. Jongeneel, K. Kreuzer, Cornelis Jongeneel, 1983, Methods in enzymology.

Organizing and running bioinformatics hackathons within Africa: The H3ABioNet cloud computing experience

Faisal M. Fadlelmola, Azza E. Ahmed, D. Armstrong, 2018, AAS open research.

Extensive genetic polymorphism in the human tumor necrosis factor region and relation to extended HLA haplotypes.

A. Cambon-Thomsen, C. Jongeneel, I. Udalova, 1991, Proceedings of the National Academy of Sciences of the United States of America.

Survival-independent function of NF-kappaB/Rel during late stages of thymocyte differentiation.

C. Jongeneel, H. Macdonald, C. Esslinger, 1998, Molecular immunology.

Reactivity of murine and human recombinant LPS-binding protein (LBP) within LPS and gram negative bacteria.

C. Jongeneel, R. Ulevitch, V. Kravchenko, 1995, Journal of inflammation.

HLA Photoaffinity Labeling Reveals Overlapping Binding of Homologous Melanoma-associated Gene Peptides by HLA-A1, HLA-A29, and HLA-B44 (*)

P. Romero, P. Coulie, C. Jongeneel, 1996, The Journal of Biological Chemistry.

Multiple specificities in the repertoire of a melanoma patient's cytolytic T lymphocytes directed against tumor antigen MAGE-1.A1

P. Romero, P. Coulie, C. Jongeneel, 1995, The Journal of experimental medicine.

Enhancers and transcription factors controlling the inducibility of the tumor necrosis factor-alpha promoter in primary macrophages.

C. Jongeneel, C. Drouet, A. Shakhov, 1991, Journal of immunology.

Cytokine regulation of TNF‐α mRNA and protein production by unprimed macrophages from C57BI/6 and NZW mice

L. Schook, C. Jongeneel, H. Albrecht, 1994 .

Nickel and skin irritants up-regulate tumor necrosis factor-alpha mRNA in keratinocytes by different but potentially synergistic mechanisms.

J. Saurat, C. Jongeneel, S. Lisby, 1995, International immunology.

Human glioma cell lines expressing the common acute lymphoblastic leukemia antigen (cALLa) have neutral endopeptidase activity

C. Jongeneel, P. Verroust, N. de Tribolet, 1989, International journal of cancer.

Bcl‐2 protects from oxidative damage and apoptotic cell death without interfering with activation of NF‐κB by TNF

J. Tschopp, C. Jongeneel, Hugo Albrecht, 1994, FEBS letters.

Tumour necrosis factor and lymphotoxin genes map close to H–2D in the mouse major histocompatibility complex

C. Jongeneel, S. Nedospasov, K. F. Lindahl, 1987, Nature.

Genomic organization and chromosomal localization of the mouse lipopolysaccharide binding protein gene

C. Jongeneel, D. Heumann, S. Lengacher, 1999, Immunogenetics.

Cytotoxic T lymphocyte mediated cytolysis.

J. Tschopp, C. Jongeneel, J. Tschopp, 1988, Biochemistry.

Association of tumor necrosis factor (TNF) and class II major histocompatibility complex alleles with the secretion of TNF-alpha and TNF-beta by human mononuclear cells: a possible link to insulin-dependent diabetes mellitus.

A. Cambon-Thomsen, F. Pociot, J. Nerup, 1993, European journal of immunology.

Transcriptional Regulation of the Tumor Necrosis Factor α Gene

C. Jongeneel, 1995 .

EuroDia: a beta-cell gene expression resource

C. V. Jongeneel, S. Bergmann, I. Xenarios, 2010 .

Impaired fetal thymocyte development after efficient adenovirus-mediated inhibition of NF-kappa B activation.

C. Jongeneel, T. Renno, T. Bakker, 1999, Journal of immunology.

Bioinformatics in Genome Sequencing Projects

C. Jongeneel, 2014 .

Statistical models to capture mutational properties for NextGen Sequencing Data

Ravishankar K. Iyer, Matthew E. Hudson, Morgan Taschuk, 2016 .

Enzymological studies of the T4 replication proteins.

B. Alberts, T. Formosa, C. Jongeneel, 1984, Advances in experimental medicine and biology.

Construction and characterization of a recombinant adenovirus directing expression of the MAGE‐1 tumor‐specific antigen

P. Romero, C. Jongeneel, J. Schaack, 1997, International journal of cancer.

Original article EuroDia: a beta-cell gene expression resource

S. Bergmann, I. Xenarios, M. Bugliani, 2010 .

Nuclear migration of NF-κB correlates with TNF-α mRNA accumulation

L. Schook, C. Jongeneel, H. Albrecht, 1995 .

Cytokine regulation of TNF-alpha mRNA and protein production by unprimed macrophages from C57Bl/6 and NZW mice.

L. Schook, C. Jongeneel, H. Albrecht, 1994, Journal of leukocyte biology.

Short time exposure to lipopolysaccharide is sufficient to activate human monocytes.

C. Jongeneel, M. Glauser, D. Heumann, 1993, Journal of immunology.

A precise map of splice junctions in the mRNAs of minute virus of mice, an autonomous parvovirus

C. Jongeneel, G. Mcmaster, R. Sahli, 1986, Journal of virology.

Common acute lymphoblastic leukemia antigen expressed on leukemia and melanoma cell lines has neutral endopeptidase activity.

C. Jongeneel, P. Verroust, M. Letarte, 1989, The Journal of clinical investigation.

Bioinformatics: Technical Aspects

C. Victor Jongeneel, C. Jongeneel, 2005 .

The need for a human gene index

C. Victor Jongeneel, C. Jongeneel, 2000, Bioinform..

trans activation of the tumor necrosis factor alpha promoter by the human T-cell leukemia virus type I Tax1 protein

C. Jongeneel, H. Albrecht, A. Shakhov, 1992, Journal of virology.

Pathogenicity of fibroblast- and lymphocyte-specific variants of minute virus of mice

C. Jongeneel, H. Engers, B. Hirt, 1986, Journal of virology.

Kappa B-type enhancers are involved in lipopolysaccharide-mediated transcriptional activation of the tumor necrosis factor alpha gene in primary macrophages

C V Jongeneel, C. Jongeneel, P. Vassalli, 1990, The Journal of experimental medicine.

A polymorphic microsatellite in the tumor necrosis factor alpha promoter identifies an allele unique to the NZW mouse strain

C. Jongeneel, T. Blankenstein, H. Acha-Orbea, 1990, The Journal of experimental medicine.

Shotgun sequencing of the human transcriptome with ORF expressed sequence tags.

F F Costa, E Dias Neto, R G Correa, 2000, Proceedings of the National Academy of Sciences of the United States of America.

Association of tumor necrosis factor (TNF) and class II major histocompatibility complex alleles with the secretion of TNF‐a and TNF‐0 by human mononuclear cells: a possible link to insulin‐dependent diabetes mellitus

A. Cambon-Thomsen, F. Pociot, J. Nerup, 1993 .

H3ABioNet, a sustainable pan-African bioinformatics network for human heredity and health in Africa

Özlem Tastan Bishop, Ezekiel Adebiyi, Scott Hazelhurst, 2016, Genome research.

The genes for tumor necrosis factor (TNF-alpha) and lymphotoxin (TNF-beta) are tandemly arranged on chromosome 17 of the mouse.

E. Kawashima, C. Jongeneel, S. Nedospasov, 1986, Nucleic acids research.

Judging the Archon Genomics X PRIZE for whole human genome sequencing

G. Sutton, L. Kedes, E. Liu, 2011, Nature Genetics.

Efficient and Scalable Workflows for Genomic Analyses

Ravishankar K. Iyer, Zbigniew T. Kalbarczyk, Wen-mei W. Hwu, 2016, DIDC@HPDC.

A 3-D model for the CD40 ligand predicts that it is a compact trimer similar to the tumor necrosis factors.

M C Peitsch, C V Jongeneel, M. Peitsch, 1993, International immunology.

Analysis of tumor necrosis factor promoter responses to ultraviolet light.

C. Jongeneel, V. Kruys, F. Bazzoni, 1994, The Journal of clinical investigation.

Regulation of the TNF alpha gene.

C V Jongeneel, C. Jongeneel, 1994, Progress in clinical and biological research.

Validation of Illumina’s Isaac variant calling workflow

Oliver Hofmann, Zachary D. Stephens, Gloria Rendon, 2015, bioRxiv.

Knowledge-guided analysis of "omics" data using the KnowEnG cloud platform

Charles Blatti, Amin Emad, Lisa Gatzke, 2020, PLoS biology.

Properties of the T4 bacteriophage DNA replication apparatus: The T4 dda DNA helicase is required to pass a bound RNA polymerase molecule

B. Alberts, M. Hochstrasser, C. Jongeneel, 1983, Cell.

Efficient adenoviral transfer of NF‐κB inhibitor sensitizes melanoma to tumor necrosis factor‐mediated apoptosis

C. Jongeneel, T. Renno, T. Bakker, 1999, International journal of cancer.

Expression of the tumor necrosis factor locus is not necessary for the cytolytic activity of T lymphocytes.

C. Jongeneel, G. Plaetinck, S. Nedospasov, 1988, Journal of immunology.

Multiple specificities in the repertoire of a melanoma patient's cytolytic T lymphocytes directed against tumor antigen MAGE-1.A1

P. Romero, P. Coulie, C. Jongeneel, 1995, The Journal of experimental medicine.

KnowEnG: a knowledge engine for genomics

Jiawei Han, Saurabh Sinha, Jun Song, 2015, J. Am. Medical Informatics Assoc..

Differential Roles of T Cell Receptor α and β Chains in Ligand Binding Among H-2Kd-restricted Cytolytic T Lymphocyte Clones Specific for a Photoreactive Plasmodium berghei Circumsporozoite Peptide Derivative *

P. Romero, C. Jongeneel, J. Cerottini, 1997, The Journal of Biological Chemistry.

Structural analysis of TCR-ligand interactions studied on H-2Kd-restricted cloned CTL specific for a photoreactive peptide derivative.

M. Peitsch, P. Romero, C. Jongeneel, 1995, Immunity.

Structural analysis of the rabbit TNF locus, containing the genes encoding TNF-β(lymphotoxin) and TNF-α(tumor necrosis factor)

Sergei A. Nedospasov, C. Jongeneel, S. Nedospasov, 1990 .

Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomics

Nicola J. Mulder, Scott Hazelhurst, Shakuntala Baichoo, 2018, BMC Bioinformatics.

Assessing computational genomics skills: Our experience in the H3ABioNet African bioinformatics network

Nicola J. Mulder, Marion O. Adebiyi, Scott Hazelhurst, 2017, PLoS Comput. Biol..

Purification and characterization of the bacteriophage T4 dda protein. A DNA helicase that associates with the viral helix-destabilizing protein.

B. Alberts, T. Formosa, C. Jongeneel, 1984, The Journal of biological chemistry.

Analysis of active site residues of the antiviral protein from summer leaves from Phytolacca americana by site-directed mutagenesis.

C. Jongeneel, J. Poyet, A. Hoeveler, 1998, Biochemical and biophysical research communications.

Familial differences in endotoxin-induced TNF release in whole blood and peripheral blood mononuclear cells in vitro; relationship to TNF gene polymorphism

J. Houwing-Duistermaat, F. Rosendaal, C. Jongeneel, 1995 .

Ten simple rules for developing bioinformatics capacity at an academic institution

Judit Kumuthini, Lyndon Zass, Melek Chaouch, 2021, PLoS Comput. Biol..

Characterization to effector lymphocytes associated with immunity to murine sarcoma virus (MSV)-induced tumors. II. Repeated stimulation and proliferation in vitro of specific cytolytic T lymphocytes.

C. Jongeneel, F. Plata, Cornelis Jongeneel, 1977, Journal of immunology.

Role of glutathione in macrophage activation: effect of cellular glutathione depletion on nitrite production and leishmanicidal activity.

C. Jongeneel, Y. Buchmüller‐Rouiller, A. Ransijn, 1995, Cellular immunology.

Effects of the bacteriophage T4 dda protein on DNA synthesis catalyzed by purified T4 replication proteins.

B. Alberts, C. Jongeneel, P. Bedinger, 1984, The Journal of biological chemistry.

High frequency of alternative splicing of human genes participating in the HIV-1 life cycle: a model using TSG101, betaTrCP, PPIA, INI1, NAF1, and PML.

Brian J. Stevenson, A. Telenti, C. Jongeneel, 2003, Journal of acquired immune deficiency syndromes.

Nucleotide sequence of the murine TNF locus, including the TNF-alpha (tumor necrosis factor) and TNF-beta (lymphotoxin) genes.

C V Jongeneel, E. Kawashima, C. Jongeneel, 1987, Nucleic acids research.

Abnormal T lymphocyte development induced by targeted overexpression of IkappaB alpha.

C. Jongeneel, F. Beermann, B. Sordat, 1997, Journal of immunology.

A View on Genomic Medicine Activities in Africa: Implications for Policy

Faisal M. Fadlelmola, C. Jongeneel, N. Tiffin, 2022, Frontiers in Genetics.

Organizing and running bioinformatics hackathons within Africa: The H3ABioNet cloud computing experience

Liudmila Sergeevna Mainzer, Yassine Souilmi, Scott Hazelhurst, 2018, AAS open research.

Abnormal TNF production in prediabetic BB rats is linked to defective CD45R expression.

H. Kolb, C. Jongeneel, T. Blankenstein, 1992, Immunology.

Transcriptional regulation of the tumor necrosis factor alpha gene.

C. Jongeneel, 1995, Immunobiology.

KnowEnG: a knowledge engine for genomics

R. Weinshilboum, Jiawei Han, Jun S. Song, 2015, J. Am. Medical Informatics Assoc..

Molecular control of tissue‐specific expression at the mouse TNF locus

C. Jongeneel, S. Nedospasov, J. Cerottini, 1989, European journal of immunology.