P. Marszalek

发表

The mechanical stability of ubiquitin is linkage dependent

Hui Lu, A. Oberhauser, Julio M Fernandez, 2003, Nature Structural Biology.

Mechanical unfolding intermediates in titin modules

Klaus Schulten, Andres F. Oberhauser, Hui Lu, 1999, Nature.

Exploiting a Mechanical Perturbation of Titin Domain to Identify How Force Field Parameterization Affects Protein Refolding Pathways

P. Marszalek, David Wang, 2019, bioRxiv.

Mechanical and chemical unfolding of a single protein: a comparison.

J. Clarke, A. Oberhauser, J. M. Fernández, 1999, Proceedings of the National Academy of Sciences of the United States of America.

The study of protein mechanics with the atomic force microscope.

A. Oberhauser, J. M. Fernández, M. Carrión-Vázquez, 1999, Trends in biochemical sciences.

Spermidine-Induced Attraction of Like-Charged Surfaces Is Correlated with the pH-Dependent Spermidine Charge: Force Spectroscopy Characterization.

T. Müller, J. Gimsa, P. Marszalek, 2018, Langmuir : the ACS journal of surfaces and colloids.

Stretching single molecules into novel conformations using the atomic force microscope

Piotr E. Marszalek, Julio M Fernandez, P. Marszalek, 2000, Nature Structural Biology.

Atomic force microscopy captures the initiation of methyl-directed DNA mismatch repair.

P. Marszalek, T. Zheng, E. Josephs, 2015, DNA repair.

Competing Pathways and Multiple Folding Nuclei in a Large Multidomain Protein, Luciferase.

Zackary N Scholl, Weitao Yang, P. Marszalek, 2017, Biophysical journal.

Mechanics of Polysaccharides

Weitao Yang, P. Marszalek, Xiancheng Zeng, 2011 .

Construction and characterization of I 27 GKN polyprotein

E. Paci, L. Itzhaki, P. Marszalek, 2012 .

Minimizing pulling geometry errors in atomic force microscope single molecule force spectroscopy.

R. Clark, D. Cole, P. Marszalek, 2008, Biophysical journal.

Nanomechanics of Single Biomacromolecules

Zackary N Scholl, P. Marszalek, Qing Li, 2014 .

Fluctuation-driven directional flow in biochemical cycle: further study of electric activation of Na,K pumps.

T. Tsong, Y. Chen, P. Marszalek, 1997, Biophysical journal.

Unraveling the Mechanical Unfolding Pathways of a Multidomain Protein: Phosphoglycerate Kinase.

Zackary N Scholl, P. Marszalek, Qing Li, 2018, Biophysical journal.

Atomic Force Microscopy Captures the Initiation of Methyl-Directed DNA Mismatch Repair Microscopy Captures the Initiation of Methyl-Directed DNA Mismatch Repair.”

P. Marszalek, E. Josephs, Tianli Zheng, 2020 .

A ‘Semi-Protected Oligonucleotide Recombination’ Assay for DNA Mismatch Repair in vivo Suggests Different Modes of Repair for Lagging Strand Mismatches

P. Marszalek, E. Josephs, 2017, Nucleic acids research.

Atomic force microscopy captures quantized plastic deformation in gold nanowires.

A. Oberhauser, J. M. Fernández, W. Greenleaf, 2000, Proceedings of the National Academy of Sciences of the United States of America.

CTMS Fellowship Report

Weitao Yang, P. Marszalek, Xiancheng Zeng, 2010 .

Improving single molecule force spectroscopy through automated real-time data collection and quantification of experimental conditions.

Zackary N Scholl, P. Marszalek, 2013, Ultramicroscopy.

Stretching single polysaccharides and proteins using atomic force microscopy.

P. Marszalek, Y. Dufrêne, 2012, Chemical Society reviews.

Kinetics of release of serotonin from isolated secretory granules. II. Ion exchange determines the diffusivity of serotonin.

J. M. Fernández, P. Marszalek, P. Verdugo, 1997, Biophysical journal.

Mechanical Unfolding and Refolding of NanoLuc via Single-Molecule Force Spectroscopy and Computer Simulations.

Weitao Yang, P. Marszalek, Pan Zhang, 2022, Biomacromolecules.

An estimate to the first approximation of microtubule rupture force

P. Marszalek, S. Endow, 2019, European Biophysics Journal.

Detecting solvent-driven transitions of poly(A) to double-stranded conformations by atomic force microscopy.

P. Marszalek, Minkyu Kim, C. Ke, 2009, Biophysical journal.

Mechanically interlocked calix[4]arene dimers display reversible bond breakage under force.

J. Gauss, P. Marszalek, A. Janshoff, 2009, Nature nanotechnology.

Detecting ultraviolet damage in single DNA molecules by atomic force microscopy.

P. Mieczkowski, P. Marszalek, C. Ke, 2007, Biophysical journal.

Polysaccharide elasticity governed by chair–boat transitions of the glucopyranose ring

Yuan-Ping Pang, Andres F. Oberhauser, Piotr E. Marszalek, 1998, Nature.

A single-molecule stretching method for lateral and normal AFM lever calibration

P. Marszalek, A. Kulik, F. Benedetti, 2013, Nanotechnology.

Reverse engineering of the giant muscle protein titin

Wolfgang A. Linke, Andres F. Oberhauser, Piotr E. Marszalek, 2002, Nature.

The force-driven conformations of heparin studied with single molecule force microscopy.

A. Oberhauser, Hongbin Li, P. Marszalek, 2003, Biophysical journal.

Strong, Tough, Stretchable, and Self‐Adhesive Hydrogels from Intrinsically Unstructured Proteins

Xuanhe Zhao, Ashutosh Chilkoti, Michael Rubinstein, 2017, Advanced materials.

The micro‐mechanics of single molecules studied with atomic force microscopy

A. Oberhauser, M. Carrión-Vázquez, P. Marszalek, 1999, The Journal of physiology.

Direct detection of the formation of V-amylose helix by single molecule force spectroscopy.

Weitao Yang, P. Marszalek, Hao Hu, 2006, Journal of the American Chemical Society.

Elastic properties of single amylose chains in water: a quantum mechanical and AFM study.

Wieslaw Nowak, Piotr E Marszalek, Weitao Yang, 2004, Journal of the American Chemical Society.

Fingerprinting polysaccharides with single-molecule atomic force microscopy

Hongbin Li, P. Marszalek, Julio M. Fernandez, 2001, Nature Biotechnology.

Atomic levers control pyranose ring conformations.

A. Oberhauser, J. M. Fernández, Hongbin Li, 1999, Proceedings of the National Academy of Sciences of the United States of America.

Chair-boat transitions in single polysaccharide molecules observed with force-ramp AFM

A. Oberhauser, Hongbin Li, P. Marszalek, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Single molecule mechanical manipulation for studying biological properties of proteins, DNA, and sugars.

Zackary N Scholl, P. Marszalek, Qing Li, 2014, Wiley interdisciplinary reviews. Nanomedicine and nanobiotechnology.

Nanomechanics of Streptavidin Hubs for Molecular Materials

Vann Bennett, Piotr E. Marszalek, Fabrizio Benedetti, 2011, Advanced materials.

Point mutations alter the mechanical stability of immunoglobulin modules

Andres F. Oberhauser, Piotr E. Marszalek, Mariano Carrion-Vazquez, 2000, Nature Structural Biology.

Single Molecule Force Spectroscopy of Modular Proteins in the Nervous System

Hongbin Li, Thomas E Fisher, Mariano Carrion-Vazquez, 2000, Neuron.

Mechanical design of proteins studied by single-molecule force spectroscopy and protein engineering.

A. Oberhauser, J. M. Fernández, Hongbin Li, 2000, Progress in biophysics and molecular biology.

The molecular elasticity of the extracellular matrix protein tenascin

Andres F. Oberhauser, Harold P. Erickson, Piotr E. Marszalek, 1998, Nature.

Modular, Nondegenerate Polyprotein Scaffolds for Atomic Force Spectroscopy.

Zackary N Scholl, P. Marszalek, E. Josephs, 2016, Biomacromolecules.

Schwan equation and transmembrane potential induced by alternating electric field.

T. Tsong, P. Marszalek, T Y Tsong, 1990, Biophysical journal.

Full Reconstruction of a Vectorial Protein Folding Pathway by Atomic Force Microscopy and Molecular Dynamics Simulations*

Huan-Xiang Zhou, Vann Bennett, Weitao Yang, 2010, The Journal of Biological Chemistry.

Direct measurements of base stacking interactions in DNA by single-molecule atomic-force spectroscopy.

P. Marszalek, C. Ke, Michael Humeniuk, 2007, Physical review letters.

Pulling geometry-induced errors in single molecule force spectroscopy measurements.

R. Clark, P. Marszalek, C. Ke, 2007, Biophysical journal.

UVA generates pyrimidine dimers in DNA directly.

P. Mieczkowski, R. Clark, P. Marszalek, 2009, Biophysical journal.

Nanoscale detection of ionizing radiation damage to DNA by atomic force microscopy.

P. Mieczkowski, P. Marszalek, J. Chute, 2008, Small.

Meeting report – NSF-sponsored workshop ‘Progress and Prospects of Single-Molecule Force Spectroscopy in Biological and Chemical Sciences’

A. Oberhauser, P. Marszalek, 2020, Journal of Cell Science.

Nanospring behaviour of ankyrin repeats

Peter Michaely, Khadar Abdi, Vann Bennett, 2006, Nature.

Intramolecular Immunological Signal Hypothesis Revived - Structural Background of Signalling Revealed by Using Congo Red as a Specific Tool

P. Piwowar, L. Konieczny, P. Marszałek, 2014, Mini reviews in medicinal chemistry.

Cell fission and formation of mini cell bodies by high frequency alternating electric field.

T. Tsong, P. Marszalek, T Y Tsong, 1995, Biophysical journal.

Single-molecule Force Spectroscopy Reveals the Calcium Dependence of the Alternative Conformations in the Native State of a βγ-Crystallin Protein*

Zackary N Scholl, Weitao Yang, P. Marszalek, 2016, The Journal of Biological Chemistry.

Dielectrophoresis and electrorotation of neurospora slime and murine myeloma cells.

T. Tsong, J. Gimsa, P. Marszalek, 1991, Biophysical journal.

Structure and specificity of the RNA-guided endonuclease Cas9 during DNA interrogation, target binding and cleavage

P. Marszalek, C. Gersbach, D. D. Kocak, 2015, Nucleic acids research.

Structure and specificity of the RNA-guided endonuclease Cas9 during DNA interrogation, target binding and cleavage

P. Marszalek, C. Gersbach, D. D. Kocak, 2015, Nucleic acids research.

Atomic force microscopy captures MutS tetramers initiating DNA mismatch repair

Yong Jiang, P. Marszalek, 2011, The EMBO journal.

Detecting DNA damage at a single-molecule level by atomic force microscopy

P. Marszalek, Yong Jiang, 2010 .

Nanomechanical fingerprints of gamma radiation damage to DNA.

P. Marszalek, J. Chute, Garrett G. Muramoto, 2009, Journal of nanoscience and nanotechnology.

Mechanical unfolding of ubiquitin molecules.

Marek Cieplak, Piotr E Marszalek, M. Cieplak, 2005, The Journal of chemical physics.

Fast and forceful refolding of stretched alpha-helical solenoid proteins.

Khadar Abdi, Vann Bennett, Christopher J Schofield, 2010, Biophysical journal.

Mechanical unfolding of an ankyrin repeat protein.

Laura S. Itzhaki, Emanuele Paci, Piotr E. Marszalek, 2010, Biophysical journal.

Nanomechanical fingerprints of UV damage to DNA.

R. Clark, P. Marszalek, Gwangrog Lee, 2007, Small.

Mechanical Stability of a Small, Highly-Luminescent Engineered Protein NanoLuc

P. Marszalek, Yue Ding, Dimitra Apostolidou, 2020, International journal of molecular sciences.

Piecewise All-Atom Steered Molecular Dynamics Simulations Reveal Key Secondary Structures in the Luciferase Mechanical Unfolding Pathway.

Weitao Yang, P. Marszalek, David Wang, 2020, Biophysical journal.

Recognition and processing of randomly fluctuating electric signals by Na,K-ATPase.

T. Tsong, Y. Chen, P. Marszalek, 1994, Biophysical journal.

Triple stimulus-responsive polypeptide nanoparticles that enhance intratumoral spatial distribution.

Ashutosh Chilkoti, Matthew R. Dreher, Daniel J. Callahan, 2012, Nano letters.

Chaperones Rescue Luciferase Folding by Separating Its Domains*

Zackary N Scholl, Weitao Yang, P. Marszalek, 2014, The Journal of Biological Chemistry.

Kinetics of release of serotonin from isolated secretory granules. I. Amperometric detection of serotonin from electroporated granules.

J. M. Fernández, P. Marszalek, P. Verdugo, 1997, Biophysical journal.

Single protein misfolding events captured by atomic force microscopy

A. Oberhauser, M. Carrión-Vázquez, P. Marszalek, 1999, Nature Structural Biology.

Atomic force microscopy captures length phenotypes in single proteins.

A. Oberhauser, J. M. Fernández, M. Carrión-Vázquez, 1999, Proceedings of the National Academy of Sciences of the United States of America.

A stochastic, cantilever approach to the evaluation of solution phase thermodynamic quantities

E. Toone, R. Clark, P. Marszalek, 2007, Proceedings of the National Academy of Sciences.

Stretching Single Polysaccharides and Proteins Using Atomic Force Microscopy

Yves F. Dufrêne, Piotr E. Marszalek, P. Marszalek, 2012 .

Molecular dynamics simulations of forced conformational transitions in 1,6-linked polysaccharides.

Piotr E Marszalek, P. Marszalek, W. Nowak, 2004, Biophysical journal.

Reconstruction of mechanical unfolding and refolding pathways of proteins with atomic force spectroscopy and computer simulations.

P. Marszalek, Qing Li, Dimitra Apostolidou, 2021, Methods.

Equilibrium sampling for biomolecules under mechanical tension.

Hao Hu, Huan-Xiang Zhou, Piotr E Marszalek, 2010, Biophysical journal.

Solvent effects on the elasticity of polysaccharide molecules in disordered and ordered states by single-molecule force spectroscopy

P. Marszalek, Qingmin Zhang, 2006 .

Atomic cranks and levers control sugar ring conformations

Piotr E. Marszalek, P. Marszalek, Gwangrog Lee, 2005 .

Direct observation of multimer stabilization in the mechanical unfolding pathway of a protein undergoing oligomerization.

Zackary N Scholl, Weitao Yang, P. Marszalek, 2015, ACS nano.

Bioelectrorheological model of the cell. 5. Electrodestruction of cellular membrane in alternating electric field.

P. Marszalek, P. Pawłowski, M. Fikus, 1993, Biophysical journal.

Experimental verification of a theoretical treatment of the mechanism of dielectrophoresis

P. Marszalek, M. Fikus, J. Zieliński, 1989 .

Surface-to-surface bridges formed by reversibly assembled polymers.

P. Marszalek, S. Craig, Gwangrog Lee, 2004, Journal of the American Chemical Society.

Mechanical anisotropy of ankyrin repeats.

Weitao Yang, P. Marszalek, C. Schofield, 2012, Biophysical journal.

Direct detection of inter-residue hydrogen bonds in polysaccharides by single-molecule force spectroscopy.

P. Marszalek, Gwangrog Lee, Qingmin Zhang, 2005, Angewandte Chemie.

Determination of electric parameters of cell membranes by a dielectrophoresis method.

T. Tsong, P. Marszalek, T Y Tsong, 1991, Biophysical journal.

Inhibitor binding increases the mechanical stability of staphylococcal nuclease.

Piotr E Marszalek, T. Tsong, Chien-Chung Wang, 2011, Biophysical journal.

Capturing the mechanical unfolding pathway of a large protein with coiled-coil probes.

Zackary N Scholl, P. Marszalek, Qing Li, 2014, Angewandte Chemie.

Mutation of Conserved Histidines Alters Tertiary Structure and Nanomechanics of Consensus Ankyrin Repeats*

Klaus Schulten, Vann Bennett, Piotr E. Marszalek, 2012, The Journal of Biological Chemistry.

A nanoscale force probe for gauging intermolecular interactions.

Chien-Chung Wang, P. Marszalek, Minkyu Kim, 2012, Angewandte Chemie.

Identification of sugar isomers by single-molecule force spectroscopy.

Piotr E Marszalek, P. Marszalek, Qingmin Zhang, 2006, Journal of the American Chemical Society.

Atomic force microscopy captures folded ribosome bound nascent chains.

Zackary N Scholl, P. Marszalek, Anna Loksztejn, 2012, Chemical communications.

Zipper-like properties of [poly(L-lysine)+ poly(L-glutamic acid)]beta-pleated molecular self-assembly.

Piotr E Marszalek, P. Marszalek, Wojciech Dzwolak, 2005, Chemical communications.

Effects of Ligand Binding on the Mechanical Properties of Ankyrin Repeat Protein Gankyrin

Laura S. Itzhaki, Emanuele Paci, Piotr E. Marszalek, 2013, PLoS Comput. Biol..

Nanomechanical control of glucopyranose rotamers.

P. Marszalek, W. Nowak, Gwangrog Lee, 2004, Journal of the American Chemical Society.

Simulating force-induced conformational transitions in polysaccharides with the SMD replica exchange method.

Hao Hu, Piotr E Marszalek, Weitao Yang, 2006, Biophysical journal.

DNA sequencing: detecting methylation with force.

P. Marszalek, 2010, Nature nanotechnology.

Structure and specificity of the RNA-guided endonuclease Cas9 during DNA interrogation, target binding and cleavage

P. Marszalek, C. Gersbach, D. D. Kocak, 2015, Nucleic acids research.

Can Dissipative Properties of Single Molecules Be Extracted from a Force Spectroscopy Experiment?

P. Marszalek, D. Klinov, A. Kulik, 2016, Biophysical journal.

The secretory granule matrix-electrolyte interface: a homologue of the p-n rectifying junction.

J. M. Fernández, V. Markin, P. Marszalek, 1995, Biophysical journal.

Mechanical unfolding intermediates in titin modules

K. Schulten, Hui Lu, A. Oberhauser, 1999, Nature.

A single-molecule stretching method for lateral and normal AFM lever calibration

P. Marszalek, A. Kulik, F. Benedetti, 2013, Nanotechnology.

An estimate to the first approximation of microtubule rupture force

P. Marszalek, S. Endow, 2019, European Biophysics Journal.

Stretching single polysaccharides and proteins using atomic force microscopy.

P. Marszalek, Y. Dufrêne, 2012, Chemical Society reviews.

Mechanical anisotropy of ankyrin repeats.

Weitao Yang, P. Marszalek, C. Schofield, 2012, Biophysical journal.

Full Reconstruction of a Vectorial Protein Folding Pathway by Atomic Force Microscopy and Molecular Dynamics Simulations*

Huan‐Xiang Zhou, Weitao Yang, P. Marszalek, 2010, The Journal of Biological Chemistry.

Fast and forceful refolding of stretched alpha-helical solenoid proteins.

P. Marszalek, Minkyu Kim, C. Schofield, 2010, Biophysical journal.

AFM-Based Single-Molecule Force Spectroscopy of Proteins.

Zackary N Scholl, P. Marszalek, 2018, Methods in molecular biology.

Endonuclease-independent DNA mismatch repair processes on the lagging strand.

P. Marszalek, E. Josephs, 2018, DNA repair.

Atomic force microscopy captures MutS tetramers initiating DNA mismatch repair

Yong Jiang, P. Marszalek, 2011, The EMBO journal.

Experimental verification of a theoretical treatment of the mechanism of dielectrophoresis

P. Marszalek, M. Fikus, J. Zieliński, 1989 .

Electrofusion of Neurospora crassa slime cells

P. Marszalek, E. Grzesiuk, M. Fikus, 1985 .

Direct observation of multimer stabilization in the mechanical unfolding pathway of a protein undergoing oligomerization.

Zackary N Scholl, Weitao Yang, P. Marszalek, 2015, ACS nano.