Justina Biele

发表

PyClone: statistical inference of clonal population structure in cancer

A. Bouchard-Côté, S. Shah, S. Aparicio, 2014, Nature Methods.

TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data

Sohrab P. Shah, Ali Bashashati, Marco A. Marra, 2014, Genome research.

Divergent modes of clonal spread and intraperitoneal mixing in high-grade serous ovarian cancer

Ali Bashashati, Alexandre Bouchard-Côté, Richard A. Moore, 2016, Nature Genetics.

Clonal genotype and population structure inference from single-cell tumor sequencing

Alexandre Bouchard-Côté, Damian Yap, Adrian Wan, 2016, Nature Methods.

Resource: Scalable whole genome sequencing of 40,000 single cells identifies stochastic aneuploidies, genome replication states and clonal repertoires

Richard A. Moore, C. Steidl, M. Marra, 2018, bioRxiv.

Dissociation of solid tumor tissues with cold active protease for single-cell RNA-seq minimizes conserved collagenase-associated stress responses

Kieran R. Campbell, Richard A. Moore, Allen W. Zhang, 2019, Genome Biology.

Dissociation of solid tumour tissues with cold active protease for single-cell RNA-seq minimizes conserved collagenase-associated stress responses

Kieran R. Campbell, Richard A. Moore, Allen W. Zhang, 2019, bioRxiv.

Clonal Decomposition and DNA Replication States Defined by Scaled Single-Cell Genome Sequencing

Richard A. Moore, Khanh N. Dinh, S. Tavaré, 2019, Cell.

Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution

Sohrab P. Shah, Ali Bashashati, Hui Xue, 2014, Nature.

clonealign: statistical integration of independent single-cell RNA & DNA-seq from human cancers

Kieran R. Campbell, A. Bouchard-Côté, S. Shah, 2018, bioRxiv.

clonealign: statistical integration of independent single-cell RNA and DNA sequencing data from human cancers

Kieran R. Campbell, A. Bouchard-Côté, S. Shah, 2019, Genome Biology.

Epiclomal: Probabilistic clustering of sparse single-cell DNA methylation data

Richard A. Moore, Mirela Andronescu, M. Hirst, 2018, bioRxiv.

populations from tumor whole-genome sequence data TITAN : inference of copy number architectures in clonal cell Material Supplemental

A. Bashashati, M. Marra, S. Shah, 2014 .

Accurate determination of CRISPR-mediated gene fitness in transplantable tumours

Mirela Andronescu, A. Bouchard-Côté, S. McKinney, 2022, Nature Communications.

Single-cell genomic variation induced by mutational processes in cancer

Allen W. Zhang, Nicole Rusk, A. McPherson, 2022, Nature.

Robust high-performance nanoliter-volume single-cell multiple displacement amplification on planar substrates

Ali Bashashati, Martin Hirst, Kaston Leung, 2016, Proceedings of the National Academy of Sciences.

Ubiquitin-mediated DNA damage response is synthetic lethal with G-quadruplex stabilizer CX-5461

S. Aparicio, S. McKinney, Justina Biele, 2021, Scientific Reports.

Dissociation of solid tumor tissues with cold active protease for single-cell RNA-seq minimizes conserved collagenase-associated stress responses

Kieran R. Campbell, Allen W. Zhang, S. Shah, 2019, Genome Biology.

Clonal fitness inferred from time-series modelling of single-cell cancer genomes

Kieran R. Campbell, Marc J. Williams, Richard A. Moore, 2021, Nature.

clonealign: statistical integration of independent single-cell RNA and DNA sequencing data from human cancers

Kieran R. Campbell, A. Bouchard-Côté, S. Shah, 2019, Genome Biology.

Evolutionary tracking of cancer haplotypes at single-cell resolution

Marc J. Williams, Nicole Rusk, S. Shah, 2021, bioRxiv.

The impact of mutational processes on structural genomic plasticity in cancer cells

Marc J. Williams, Richard A. Moore, Allen W. Zhang, 2021, bioRxiv.

Single cell fitness landscapes induced by genetic and pharmacologic perturbations in cancer

Kieran R. Campbell, Marc J. Williams, Richard A. Moore, 2020, bioRxiv.

clonealign: statistical integration of independent single-cell RNA & DNA-seq from human cancers

Kieran R. Campbell, A. Bouchard-Côté, A. McPherson, 2018, bioRxiv.

Divergent modes of clonal spread and intraperitoneal mixing in high-grade serous ovarian cancer

Richard A. Moore, Allen W. Zhang, A. Bashashati, 2016, Nature Genetics.

TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data

A. Bashashati, M. Marra, A. McPherson, 2014, Genome research.

Single-cell decoding of drug induced transcriptomic reprogramming in triple negative breast cancers

Mirela Andronescu, Andrew Roth, A. Mungall, 2023, bioRxiv.