M. Bibikova

发表

Genome-wide methylation profiles reveal quantitative views of human aging rates.

T. Ideker, S. Friend, Jian-Bing Fan, 2013, Molecular cell.

Expression signatures that correlated with Gleason score and relapse in prostate cancer.

J. Wang-Rodriguez, Jian-Bing Fan, D. Barker, 2007, Genomics.

Genome‐wide DNA methylation profiling

Jian-Bing Fan, M. Bibikova, Jian-Bing Fan, 2010, Wiley interdisciplinary reviews. Systems biology and medicine.

High-throughput SNP genotyping on universal bead arrays.

K. Gunderson, F. Steemers, B. Kermani, 2005, Mutation research.

Illumina universal bead arrays.

K. Gunderson, M. Laurent, Jian-Bing Fan, 2006, Methods in enzymology.

Human embryonic stem cells have a unique epigenetic signature.

Jian-Bing Fan, A. Chakravarti, D. Barker, 2006, Genome research.

High-throughput DNA methylation profiling using universal bead arrays.

Wei Jiang, Jian-Bing Fan, M. Chee, 2006, Genome research.

GoldenGate assay for DNA methylation profiling.

Jian-Bing Fan, M. Bibikova, 2009, Methods in molecular biology.

Efficient Gene Targeting in Drosophila With Zinc-Finger Nucleases

M. Bibikova, D. Carroll, K. Beumer, 2006, Genetics.

Tumorigenesis and Neoplastic Progression Quantitative Gene Expression Profiling in Formalin-Fixed , Paraffin-Embedded Tissues Using Universal Bead Arrays

Jian-Bing Fan, M. Chee, D. Barker, 2004 .

A versatile assay for high-throughput gene expression profiling on universal array matrices.

Jian-Bing Fan, A. Oliphant, M. Chee, 2004, Genome research.

Genome-wide DNA methylation profiling using Infinium® assay.

K. Gunderson, Richard Shen, Jennie M. Le, 2009, Epigenomics.

Two-dimensional transcriptome profiling: identification of messenger RNA isoform signatures in prostate cancer from archived paraffin-embedded cancer specimens.

Christina L. Zheng, J. Wang-Rodriguez, Jian-Bing Fan, 2006, Cancer research.

Highly parallel SNP genotyping.

D Bentley, P Deloukas, B G Kermani, 2003, Cold Spring Harbor symposia on quantitative biology.

Targeted chromosomal cleavage and mutagenesis in Drosophila using zinc-finger nucleases.

Dana Carroll, Marina Bibikova, M. Bibikova, 2002, Genetics.

Targeted methylation sequencing of plasma cell-free DNA for cancer detection and classification

P. Laird, T. Hinoue, F. Meric-Bernstam, 2018, Annals of oncology : official journal of the European Society for Medical Oncology.

Mre11 protein complex prevents double-strand break accumulation during chromosomal DNA replication.

M. Bibikova, J. Gautier, V. Costanzo, 2001, Molecular cell.

Prostate tumor DNA methylation is associated with cigarette smoking and adverse prostate cancer outcomes

Jian-Bing Fan, J. Stanford, E. Ostrander, 2016, Cancer.

DNA methylation and gene expression differences in children conceived in vitro or in vivo.

C. Sapienza, J. Gaughan, M. Bibikova, 2009, Human molecular genetics.

Archived Paraffin-Embedded Cancer Specimens fromMessenger RNA Isoform Signatures in Prostate Cancer Two-Dimensional Transcriptome Profiling : Identification of Updated

Christina L. Zheng, J. Wang-Rodriguez, Jian-Bing Fan, 2006 .

Targeted or whole genome sequencing of formalin fixed tissue samples: potential applications in cancer genomics

Peter Beyerlein, Jeremy Chien, Brandy Klotzle, 2015, Oncotarget.

Integrated Molecular Analyses of Biological Samples on a Bead-Based Microarray Platform

Kenneth M. Kuhn, K. Gunderson, F. Steemers, 2007 .

DNA Methylation Microarrays

M. Bibikova, 2016 .

Tumor hypomethylation at 6p21.3 associates with longer time to recurrence of high-grade serous epithelial ovarian cancer.

Jeremy Chien, Marina Bibikova, Sebastian M. Armasu, 2014, Cancer research.

Requirements for double-strand cleavage by chimeric restriction enzymes with zinc finger DNA-recognition domains.

S Chandrasegaran, S. Chandrasegaran, M. Bibikova, 2000, Nucleic acids research.

Characterization of FEN-1 from Xenopus laevis

M. Bibikova, B. Wu, K. Kim, 1998, The Journal of Biological Chemistry.

Human embryonic stem cells have a unique epigenetic signature data

Jian-Bing Fan, A. Chakravarti, D. Barker, 2006 .

A Comprehensive Microarray-Based DNA Methylation Study of 367 Hematological Neoplasms

Marina Bibikova, Xabier Agirre, Reiner Siebert, 2009, PloS one.

DNA methylation markers of surfactant proteins in lung cancer.

Jian-Bing Fan, T. Goldmann, E. Vollmer, 2007, International journal of oncology.

Expression of an active tobacco mitogen-activated protein kinase kinase kinase enhances freezing tolerance in transgenic maize.

Jian-Bing Fan, M. Bibikova, J. Yeakley, 2004, Proceedings of the National Academy of Sciences of the United States of America.

Epigenome-wide ovarian cancer analysis identifies a methylation profile differentiating clear-cell histology with epigenetic silencing of the HERG K+ channel.

Sebastian M. Armasu, David N. Rider, R. Vierkant, 2013, Human molecular genetics.

Microarray‐based DNA methylation analysis of imprinted loci in a patient with transient neonatal diabetes mellitus

R. Siebert, Jian-Bing Fan, J. Martín-Subero, 2008, American journal of medical genetics. Part A.

Large-scale profiling of archival lymph nodes reveals pervasive remodeling of the follicular lymphoma methylome.

P. Meltzer, E. Jaffe, J. Hipp, 2009, Cancer research.

Array-based DNA methylation profiling of primary lymphomas of the central nervous system

R. Siebert, J. Martín-Subero, J. Richter, 2009, BMC Cancer.

Quantitative expression profiling of RNA from formalin-fixed, paraffin-embedded tissues using randomly assembled bead arrays.

J. Wang-Rodriguez, Jian-Bing Fan, M. Bibikova, 2008, Methods in molecular biology.

Gene expression profiles in formalin-fixed, paraffin-embedded tissues obtained with a novel assay for microarray analysis.

J. Wang-Rodriguez, Jian-Bing Fan, E. Chudin, 2004, Clinical chemistry.

Gene expression panel predicts metastatic‐lethal prostate cancer outcomes in men diagnosed with clinically localized prostate cancer

P. Nelson, Jian-Bing Fan, J. Stanford, 2016, Molecular oncology.

TP53 mutations, tetraploidy and homologous recombination repair defects in early stage high-grade serous ovarian cancer

D. Bentley, R. K. Cheetham, S. Humphray, 2015, Nucleic acids research.

Validation of a DNA methylation microarray for 450,000 CpG sites in the human genome

M. Esteller, H. Heyn, J. Serra-Musach, 2011, Epigenetics.

Differential Allelic Expression in the Human Genome: A Robust Approach To Identify Genetic and Epigenetic Cis-Acting Mechanisms Regulating Gene Expression

Thomas J. Hudson, Marina Bibikova, Bing Ge, 2008, PLoS genetics.

High density DNA methylation array with single CpG site resolution.

K. Gunderson, Lu Zhang, G. Schroth, 2011, Genomics.

Allele-specific expression in the germline of patients with familial pancreatic cancer: An unbiased approach to cancer gene discovery

Alison P. Klein, Raimond L. Winslow, Marina Bibikova, 2008, Cancer biology & therapy.

Enhancing Gene Targeting with Designed Zinc Finger Nucleases

Dana Carroll, Marina Bibikova, M. Bibikova, 2003, Science.

Substantial DNA methylation differences between two major neuronal subtypes in human brain

E. Koonin, Bin Zhang, A. Dwork, 2015, Nucleic acids research.

Unraveling epigenetic regulation in embryonic stem cells.

Bing Ren, Marina Bibikova, Louise C Laurent, 2008, Cell stem cell.

Sensitive ChIP-DSL technology reveals an extensive estrogen receptor α-binding program on human gene promoters

Marina Bibikova, Xiang-Dong Fu, Dongyan Liu, 2007, Proceedings of the National Academy of Sciences.

Clinical Characteristics of Ovarian Cancer Classified by BRCA1, BRCA2, and RAD51C Status

Jian-Bing Fan, B. Fridley, E. Goode, 2014, Scientific Reports.

Title Clinical characteristics of ovarian cancer classified by BRCA 1 , BRCA 2 , and RAD 51 C status Permalink

B. Fridley, E. Goode, Jen-Tzung Chien, 2014 .

TP 53 mutations , tetraploidy and homologous recombination repair defects in early stage high-grade serous ovarian cancer

Julie, D. Bentley, R. K. Cheetham, 2015 .

Epigenomic profiling of prostate cancer identifies differentially methylated genes in TMPRSS2:ERG fusion-positive versus fusion-negative tumors

P. A. van den Brandt, Jian-Bing Fan, J. Stanford, 2015, Clinical Epigenetics.

DNA methylation fingerprint of neuroblastoma reveals new biological and clinical insights.

Kristopher L. Nazor, J. Martín-Subero, G. Castellano, 2015, Epigenomics.

A Panel of CpG Methylation Sites Distinguishes Human Embryonic Stem Cells and Induced Pluripotent Stem Cells

Jian-Bing Fan, M. Pellegrini, Zhigang Xue, 2013, Stem cell reports.

Differences in DNA methylation between human neuronal and glial cells are concentrated in enhancers and non-CpG sites

E. Koonin, Y. Hurd, W. Byne, 2013, Nucleic acids research.

Epigenomic analysis detects widespread gene-body DNA hypomethylation in chronic lymphocytic leukemia

Alfonso Valencia, Modesto Orozco, Brandy Klotzle, 2012, Nature Genetics.

APOBEC3B upregulation and genomic mutation patterns in serous ovarian carcinoma.

Jason B. Nikas, D. Bentley, R. K. Cheetham, 2013, Cancer research.

Epigenome-Wide Tumor DNA Methylation Profiling Identifies Novel Prognostic Biomarkers of Metastatic-Lethal Progression in Men Diagnosed with Clinically Localized Prostate Cancer

Jian-Bing Fan, J. Stanford, E. Ostrander, 2016, Clinical Cancer Research.

Epigenomic profiling of DNA methylation in paired prostate cancer versus adjacent benign tissue

Jian-Bing Fan, J. Stanford, E. Ostrander, 2015, The Prostate.

Epigenetic signature of Gleason score and prostate cancer recurrence after radical prostatectomy

Jian-Bing Fan, J. Stanford, E. Ostrander, 2016, Clinical Epigenetics.

PTEN loss is associated with prostate cancer recurrence and alterations in tumor DNA methylation profiles

P. Nelson, Jian-Bing Fan, J. Stanford, 2017, Oncotarget.

Functional analysis of human microtubule-based motor proteins, the kinesins and dyneins, in mitosis/cytokinesis using RNA interference.

Marina Bibikova, Robert T Abraham, Wei Jiang, 2005, Molecular biology of the cell.

Succinate dehydrogenase mutation underlies global epigenomic divergence in gastrointestinal stromal tumor.

P. Meltzer, Jian-Bing Fan, M. O'sullivan, 2013, Cancer discovery.

New insights into the biology and origin of mature aggressive B-cell lymphomas by combined epigenomic, genomic, and transcriptional profiling.

R. Spang, A. Rosenwald, W. Klapper, 2009, Blood.

Validation Study of Genes with Hypermethylated Promoter Regions Associated with Prostate Cancer Recurrence

Jian-Bing Fan, J. Stanford, E. Ostrander, 2014, Cancer Epidemiology, Biomarkers & Prevention.

Identification and functional relevance of de novo DNA methylation in cancerous B‐cell populations

W. C. Chan, T. Greiner, D. Weisenburger, 2010, Journal of cellular biochemistry.

Epigenomics: DNA methylation profiling using Illumina BeadArray platform

K. Gunderson, Jian-Bing Fan, M. Bibikova, 2012 .

A methyl-deviator epigenotype of estrogen receptor-positive breast carcinoma is associated with malignant biology.

P. Meltzer, Jian-Bing Fan, S. Davis, 2011, The American journal of pathology.

Stimulation of Homologous Recombination through Targeted Cleavage by Chimeric Nucleases

Dana Carroll, Marina Bibikova, David J. Segal, 2001, Molecular and Cellular Biology.

Gene expression signature of Gleason score is associated with prostate cancer outcomes in a radical prostatectomy cohort

Min A. Jhun, Jian-Bing Fan, J. Stanford, 2017, Oncotarget.

Epigenetic signature of Gleason score and prostate cancer recurrence after radical prostatectomy

P. Nelson, Jian-Bing Fan, J. Stanford, 2016, Clinical Epigenetics.

DNA methylation profiles in African American prostate cancer patients in relation to disease progression.

Jian-Bing Fan, J. Stanford, E. Ostrander, 2016, Genomics.

Whole-genome haplotyping by dilution, amplification, and sequencing

Mostafa Ronaghi, Brandy Klotzle, Marina Bibikova, 2013, Proceedings of the National Academy of Sciences.

Highly Parallel Genome-Wide Expression Analysis of Single Mammalian Cells

S. Linnarsson, M. Ronaghi, Jian-Bing Fan, 2012, PloS one.

Correction: Highly Parallel Genome-Wide Expression Analysis of Single Mammalian Cells

S. Linnarsson, M. Ronaghi, J. Chen, 2012, PLoS ONE.

functions in embryonic cytokinesis Zebrafish mitotic kinesin-like protein 1 (Mklp1)

E. Bossy‐Wetzel, M. Bibikova, Yi Zhou, 2015 .

Application of a low cost array-based technique - TAB-Array - for quantifying and mapping both 5mC and 5hmC at single base resolution in human pluripotent stem cells.

Kristopher L. Nazor, Jian-Bing Fan, Chuan He, 2014, Genomics.

Epigenetic specificity of loss of imprinting of the IGF2 gene in Wilms tumors.

A. Feinberg, Jian-Bing Fan, M. Fallin, 2007, Journal of the National Cancer Institute.

Genomic profiling of 766 cancer‐related genes in archived esophageal normal and carcinoma tissues

Marina Bibikova, Wei Jiang, Jessica Wang-Rodriguez, 2008, International journal of cancer.

Pisces: an accurate and versatile variant caller for somatic and germline next-generation sequencing data

Yu Jiang, Michael Strömberg, Tamsen Dunn, 2018, bioRxiv.

Divergence in Gastrointestinal Stromal Tumor Succinate Dehydrogenase Mutation Underlies Global Epigenomic

P. Meltzer, Jian-Bing Fan, M. O'sullivan, 2013 .

Array-based DNA methylation analysis in classical Hodgkin lymphoma reveals new insights into the mechanisms underlying silencing of B cell-specific genes

R. Siebert, B. Korn, J. Richter, 2012, Leukemia.

Tumor hypomethylation at 6p21.3 associates with longer time to recurrence of high-grade serous epithelial ovarian cancer.

B. Fridley, E. Goode, L. Hartmann, 2014, Cancer Research.

Epigenomic profiling of prostate cancer identifies differentially methylated genes in TMPRSS2:ERG fusion-positive versus fusion-negative tumors

P. A. van den Brandt, Jian-Bing Fan, J. Stanford, 2015, Clinical Epigenetics.

Epigenomics: DNA methylation profiling using Illumina BeadArray platform

K. Gunderson, Jian-Bing Fan, M. Bibikova, 2012 .

APOBEC3B upregulation and genomic mutation patterns in serous ovarian carcinoma.

Jason B. Nikas, D. Bentley, R. K. Cheetham, 2013, Cancer research.

Targeted or whole genome sequencing of formalin fixed tissue samples: potential applications in cancer genomics

Jian-Bing Fan, J. Chien, A. Godwin, 2015, Oncotarget.

Validation Study of Genes with Hypermethylated Promoter Regions Associated with Prostate Cancer Recurrence

Jian-Bing Fan, J. Stanford, E. Ostrander, 2014, Cancer Epidemiology, Biomarkers & Prevention.

Abstract P1-05-27: Liquid Biopsy for HER2 Status Assessment in Breast Cancer Using Surrogate DNA Methylation Markers

M. Bibikova, Jian-Bing Fan, D. Pang, 2023, Cancer Research.

Targeted chromosomal cleavage and mutagenesis in Drosophila using zinc-finger nucleases.

M. Bibikova, K. Golic, D. Carroll, 2002, Genetics.

A methyl-deviator epigenotype of estrogen receptor-positive breast carcinoma is associated with malignant biology.

P. Meltzer, S. Davis, S. Bilke, 2011, The American journal of pathology.

Quantitative gene expression profiling in formalin-fixed, paraffin-embedded tissues using universal bead arrays.

M. Chee, D. Barker, Yixin Wang, 2004, The American journal of pathology.