Yanshan Wang

发表

CREATE: Cohort Retrieval Enhanced by Analysis of Text from Electronic Health Records using OMOP Common Data Model pdf

Hongfang Liu, Liwei Wang, Feichen Shen, 2019, ArXiv.

Natural Language Processing for the Evaluation of Methodological Standards and Best Practices of EHR-based Clinical Research.

Kevin J. Peterson, Hongfang Liu, J. Sauver, 2020, AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.

Use of Natural Language Processing Algorithms to Identify Common Data Elements in Operative Notes for Total Hip Arthroplasty.

Sunghwan Sohn, Sunyang Fu, Daniel J Berry, 2019, The Journal of bone and joint surgery. American volume.

Attention-based Neural Networks for Chemical Protein Relation Extraction

Hongfang Liu, F. Shen, M. Rastegar-Mojarad, 2017 .

Clinical concept extraction: A methodology review

Sunghwan Sohn, Liwei Wang, Feichen Shen, 2020, J. Biomed. Informatics.

Characterizing Chronic Pain Episodes in Clinical Text at Two Health Care Systems: Comprehensive Annotation and Corpus Analysis

Hongfang Liu, R. McCoy, Yanshan Wang, 2020, JMIR Medical Informatics.

Detecting Pharmacovigilance Signals Combining Electronic Medical Records With Spontaneous Reports: A Case Study of Conventional Disease-Modifying Antirheumatic Drugs for Rheumatoid Arthritis

Liwei Wang, Feichen Shen, Hongfang Liu, 2018, Front. Pharmacol..

Session 11: Methods Towards A Distant Supervision Paradigm for Clinical Information Extraction: Creating Large Training Datasets for Machine Learning

Hongfang Liu, Yanshan Wang, Elizabeth J. Atkinson, 2018 .

Computational drug repurposing based on electronic health records: a scoping review

J. Cerhan, Yiqing Zhao, Liwei Wang, 2022, npj Digital Medicine.

Patient Asynchronous Response to Coronavirus Disease 2019 (COVID-19): A Retrospective Analysis of Patient Portal Messages

Hongfang Liu, Liwei Wang, Nansu Zong, 2021, AMIA.

Clinical Use of an Information Retrieval Framework for Cohort Discovery from Electronic Health Records

Hongfang Liu, Chunhua Weng, Sijia Liu, 2019, AMIA.

Drug-drug Interaction Detection with A Topic-modeling Based Framework Augmented with Distant-supervision

Hongfang Liu, Dingcheng Li, Vipin Chaudhary, 2016, AMIA.

Salience of Medical Concepts of Inside Clinical Texts and Outside Medical Records for Referred Cardiovascular Patients

Hongfang Liu, Paul Kingsbury, Sijia Liu, 2019, J. Heal. Informatics Res..

Leveraging both Structured and Unstructured Data for Precision Information Retrieval

Hongfang Liu, K. E. Ravikumar, Majid Rastegar-Mojarad, 2017, TREC.

Summarization of Patient Education Material for New Media Platform

Hongfang Liu, Yiqing Zhao, Yanshan Wang, 2019, AMIA.

Classifying the lifestyle status for Alzheimer’s disease from clinical notes using deep learning with weak supervision

Yanshan Wang, Dalton Schutte, A. Bompelli, 2022, BMC Medical Informatics and Decision Making.

Toward Improving Health Literacy in Patient Education Materials with Neural Machine Translation Models

Yiye Zhang, Yanshan Wang, Leming Zhou, 2022, ArXiv.

Completeness of Social and Behavioral Determinants of Health in Electronic Health Records: A case study on the Patient-Provided Information from a minority cohort with sexually transmitted diseases

Bhavani Singh Agnikula Kshatriya, Yanshan Wang, J. Balls-Berry, 2020 .

Automated Fidelity Assessment for Strategy Training in Inpatient Rehabilitation using Natural Language Processing

Yanshan Wang, Leming Zhou, E. Skidmore, 2022, ArXiv.

Family History Extraction From Synthetic Clinical Narratives Using Natural Language Processing: Overview and Evaluation of a Challenge Data Set and Solutions for the 2019 National NLP Clinical Challenges (n2c2)/Open Health Natural Language Processing (OHNLP) Competition (Preprint)

Hongfang Liu, F. Shen, Yanshan Wang, 2020 .

Overview of the 2019 n2c2/OHNLP Track on Family History Extraction (Preprint)

Özlem Uzuner, Hongfang Liu, F. Shen, 2020 .

EchoGen: Generating Conclusions from Echocardiogram Notes

Justin F. Rousseau, Greg Durrett, Yanshan Wang, 2022, BIONLP.

EchoGen: A New Benchmark Study on Generating Conclusions from Echocardiogram Notes.

Justin F. Rousseau, Greg Durrett, Yanshan Wang, 2022, Proceedings of the conference. Association for Computational Linguistics. Meeting.

Prediction of Incident Dementia Using Patient Temporal Health Status

J. Sauver, S. Sohn, M. Mielke, 2022, MedInfo.

Leveraging word embeddings and medical entity extraction for biomedical dataset retrieval using unstructured texts

Hongfang Liu, K. E. Ravikumar, Majid Rastegar-Mojarad, 2017, Database J. Biol. Databases Curation.

HPO2Vec+: Leveraging heterogeneous knowledge resources to enrich node embeddings for the Human Phenotype Ontology

Feichen Shen, Sijia Liu, Liwei Wang, 2019, J. Biomed. Informatics.

The 2019 n2c2/UMass Lowell shared task on clinical concept normalization

Anna Rumshisky, F. Shen, Yen-Fu Luo, 2020, Journal of the American Medical Informatics Association.

Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine

Qingyu Chen, Zhiyong Lu, Karin M. Verspoor, 2019, Database J. Biol. Databases Curation.

Recommendations for patient similarity classes: results of the AMIA 2019 workshop on defining patient similarity

Gil Alterovitz, Matvey B Palchuk, Feichen Shen, 2020, J. Am. Medical Informatics Assoc..

Clinical information extraction applications: A literature review

Hongfang Liu, S. Sohn, Liwei Wang, 2018, J. Biomed. Informatics.

A Comparison of Word Embeddings for the Biomedical Natural Language Processing

Hongfang Liu, Liwei Wang, Feichen Shen, 2018, J. Biomed. Informatics.

The 2019 National Natural language processing (NLP) Clinical Challenges (n2c2)/Open Health NLP (OHNLP) shared task on clinical concept normalization for clinical records

Özlem Uzuner, Feichen Shen, Yanshan Wang, 2020, J. Am. Medical Informatics Assoc..

Using weak supervision and deep learning to classify clinical notes for identification of current suicidal ideation.

Jyotishman Pathak, Thomas R. Campion, Annie C. Myers, 2021, Journal of psychiatric research.

Graph-Augmented Cyclic Learning Framework for Similarity Estimation of Medical Clinical Notes

X. Jia, Yanshan Wang, Can Zheng, 2022, 2022 IEEE 10th International Conference on Healthcare Informatics (ICHI).

The 2019 n2c2/OHNLP Track on Clinical Semantic Textual Similarity: Overview

Feichen Shen, Hongfang Liu, Yanshan Wang, 2020, JMIR medical informatics.

MedSTS: a resource for clinical semantic textual similarity

Hongfang Liu, Liwei Wang, Feichen Shen, 2018, Language Resources and Evaluation.

HealthPrompt: A Zero-shot Learning Paradigm for Clinical Natural Language Processing

Yanshan Wang, Sonish Sivarajkumar, S. Sivarajkumar, 2022, AMIA.

Hongfang Liu, F. Shen, Yanshan Wang, 2020, JMIR medical informatics.

Social and Behavioral Determinants of Health in the Era of Artificial Intelligence with Electronic Health Records: A Scoping Review

Anusha Bompelli, Ruyuan Wan, David Oniani, 2021, Health Data Science.

Clinical concept extraction: A methodology review

Kevin J. Peterson, Hongfang Liu, Yiqing Zhao, 2020, J. Biomed. Informatics.

Test collections for electronic health record-based clinical information retrieval

William R. Hersh, Sijia Liu, Steven Bedrick, 2019, JAMIA open.

Characterizing Chronic Pain Episodes in Clinical Text at Two Health Care Systems: Comprehensive Annotation and Corpus Analysis (Preprint)

Hongfang Liu, R. McCoy, Yanshan Wang, 2020 .

Recommending Education Materials for Diabetic Questions Using Information Retrieval Approaches

Hongfang Liu, Liwei Wang, Feichen Shen, 2017, AMIA.

A Qualitative Evaluation of Language Models on Automatic Question-Answering for COVID-19

Yanshan Wang, David Oniani, Yanshan Wang, 2020, BCB.

Deep Learning Approach to Parse Eligibility Criteria in Dietary Supplements Clinical Trials Following OMOP Common Data Model

Rui Zhang, Zhe He, Yanshan Wang, 2020, medRxiv.

Fair Patient Model: Mitigating Bias in the Patient Representation Learned from the Electronic Health Records

Yanshan Wang, Yufei Huang, S. Sivarajkumar, 2023, ArXiv.

Assessing Unmet Information Needs of Breast Cancer Survivors: Exploratory Study of Online Health Forums Using Text Classification and Retrieval

Hongfang Liu, Majid Rastegar-Mojarad, Yanshan Wang, 2018, JMIR cancer.

Natural language processing for populating lung cancer clinical research data

Hongfang Liu, Lei Luo, Liwei Wang, 2019, BMC Medical Informatics and Decision Making.

EchoGen: Generating Conclusions from Echocardiogram Notes

Justin F. Rousseau, Greg Durrett, Yanshan Wang, 2022, BIONLP.

Neural Language Models with Distant Supervision to Identify Major Depressive Disorder from Clinical Notes pdf

Euijung Ryu, Mark A. Frye, Sunyang Fu, 2021, ArXiv.

Social determinants of health in the era of artificial intelligence with electronic health records: A systematic review pdf

Lin Xu, Anusha Bompelli, Ruyuan Wan, 2021, ArXiv.

An aberration detection-based approach for sentinel syndromic surveillance of COVID-19 and other novel influenza-like illnesses

Hongfang Liu, S. Sohn, Liwei Wang, 2020, Journal of Biomedical Informatics.

A Review of the End-to-End Methodologies for Clinical Concept Extraction

Hongfang Liu, Feichen Shen, Yiqing Zhao, 2019 .

Development of Clinical Concept Extraction Applications: A Methodology Review pdf

Hongfang Liu, Feichen Shen, Yiqing Zhao, 2019, ArXiv.

Evaluation of patient-level retrieval from electronic health record data for a cohort discovery task

William R. Hersh, Arjeh M. Cohen, Sijia Liu, 2019, JAMIA open.

Generalized ensemble model for document ranking in information retrieval

In-Chan Choi, Yanshan Wang, Hongfang Liu, 2015, Comput. Sci. Inf. Syst..

The importance of social activity to risk of major depression in older adults

Benjamin S. Glicksberg, M. Weissman, G. Jenkins, 2021, Psychological Medicine.

Identification of Genetic Causality Statements in Medline Abstracts Leveraging Distant Supervision

Hongfang Liu, K. E. Ravikumar, Liwei Wang, 2018, 2018 IEEE International Conference on Healthcare Informatics Workshop (ICHI-W).

Utilization of Electronic Medical Records and Biomedical Literature to Support Rare Disease Diagnosis (Preprint)

Hongfang Liu, Liwei Wang, F. Shen, 2018 .

The 2019 n2c2/OHNLP Track on Clinical Semantic Textual Similarity: Overview

Hongfang Liu, F. Shen, Yanshan Wang, 2020, JMIR medical informatics.

Selected articles from the BioCreative/OHNLP challenge 2018

Sijia Liu, Hongfang Liu, Yanshan Wang, 2019, BMC Medical Informatics and Decision Making.

Extraction of Sleep Information from Clinical Notes of Alzheimer's Disease Patients Using Natural Language Processing

S. Visweswaran, Yanshan Wang, H. A. Mohammad, 2022, medRxiv.

Automatic extraction and assessment of lifestyle exposures for Alzheimer's disease using natural language processing

Hongfang Liu, Sunghwan Sohn, Yanshan Wang, 2019, Int. J. Medical Informatics.

Extracting chemical–protein relations using attention-based neural networks

Hongfang Liu, K. E. Ravikumar, Feichen Shen, 2018, Database J. Biol. Databases Curation.

Journal of Biomedical Informatics

Hongfang Liu, Liwei Wang, Feichen Shen, 2022 .

How Good is Artificial Intelligence at Automatically Answering Consumer Questions Related to Alzheimer's Disease? pdf

Yanshan Wang, Sunyang Fu, Hongfang Liu, 2019, ArXiv.

Few-Shot Learning for Clinical Natural Language Processing Using Siamese Neural Networks

Yanshan Wang, S. Sivarajkumar, David Oniani, 2022, ArXiv.

Large Language Models Vote: Prompting for Rare Disease Identification

F. Gao, Yanshan Wang, Hang Dong, 2023, arXiv.org.

BioCreative/OHNLP Challenge 2018

Hongfang Liu, Liwei Wang, Feichen Shen, 2018, BCB.

Enhancing Clinical Information Retrieval through Context-Aware Queries and Indices

Sijia Liu, Hongfang Liu, Yanshan Wang, 2019, 2019 IEEE International Conference on Big Data (Big Data).

ReDWINE: A Clinical Datamart with Text Analytical Capabilities to Facilitate Rehabilitation Research

M. Becich, A. Delitto, S. Visweswaran, 2023, International Journal of Medical Informatics.

Extracting Physical Rehabilitation Exercise Information from Clinical Notes: a Comparison of Rule-Based and Machine Learning Natural Language Processing Techniques

S. Visweswaran, Yanshan Wang, A. Bove, 2023, ArXiv.

Natural Language Processing for the Identification of Silent Brain Infarcts From Neuroimaging Reports

Kristoff B. Nelson, Paul R. Kingsbury, Kristin A. Kinsman, 2019, JMIR Medical Informatics.

A frequency-filtering strategy of obtaining PHI-free sentences from clinical data repository

Hongfang Liu, K. E. Ravikumar, Dingcheng Li, 2015, BCB.

From Military to Healthcare: Adopting and Expanding Ethical Principles for Generative Artificial Intelligence

Yifan Peng, Yanshan Wang, David Oniani, 2023, ArXiv.

Clinical information extraction applications: A literature review

Hongfang Liu, S. Sohn, Liwei Wang, 2018, J. Biomed. Informatics.

Implementation of a Cohort Retrieval System for Clinical Data Repositories Using the Observational Medical Outcomes Partnership Common Data Model: Proof-of-Concept System Validation

Feichen Shen, Sijia Liu, Hongfang Liu, 2020, JMIR medical informatics.

Implementation of a Cohort Retrieval System for Clinical Data Repositories Using the Observational Medical Outcomes Partnership Common Data Model: Proof-of-Concept System Validation (Preprint)

W. Hersh, Hongfang Liu, Liwei Wang, 2019 .

Applications of Natural Language Processing in Clinical Research and Practice

Sunghwan Sohn, Rui Zhang, Yanshan Wang, 2019, NAACL.

A Topic-modeling Based Framework for Drug-drug Interaction Classification from Biomedical Text

Hongfang Liu, Dingcheng Li, Vipin Chaudhary, 2016, AMIA.

Less Likely Brainstorming: Using Language Models to Generate Alternative Hypotheses

Justin F. Rousseau, Greg Durrett, Yifan Peng, 2023, ACL.

Large Language Models Vote: Prompting for Rare Disease Identification

F. Gao, Yanshan Wang, Hang Dong, 2023, arXiv.org.

Extracting Lifestyle Factors for Alzheimer's Disease from Clinical Notes Using Deep Learning with Weak Supervision

Rui Zhang, Yanshan Wang, Anusha Bompelli, 2021, ArXiv.

Retrieval of Semantically Similar Healthcare Questions in Healthcare Forums

Hongfang Liu, Dingcheng Li, Saeed Mehrabi, 2015, 2015 International Conference on Healthcare Informatics.

A Query Taxonomy Describes Performance of Patient-Level Retrieval from Electronic Health Record Data

William R. Hersh, Sijia Liu, Steven Bedrick, 2019, HSDM@WSDM.