D. Rao

发表

A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes.

J. Heitman, J. V. Van Etten, B. Stoddard, 2003, Nucleic acids research.

Functional cooperation between exonucleases and endonucleases--basis for the evolution of restriction enzymes.

D. Rao, Nidhanapathi K Raghavendra, 2003, Nucleic acids research.

Asymmetric DNA methylation by dimeric EcoP15I DNA methyltransferase.

J. Bujnicki, D. Rao, Madhusoodanan Urulangodi, 2016, Biochimie.

N4-cytosine DNA methylation regulates transcription and pathogenesis in Helicobacter pylori

R. Morgan, D. Rao, A. Mukhopadhyay, 2018, Nucleic acids research.

Rewriting the Genome of the Model Eukaryote Saccharomyces cerevisiae

S. Chandrasegaran, D. Rao, V. Sambasivam, 2020, Resonance.

Diversity of DNA methyltransferases that recognize asymmetric target sequences

D. Rao, U. Madhusoodanan, U. K. Madhusoodanan, 2010, Critical reviews in biochemistry and molecular biology.

Factor VIII Hydrolysis Mediated by Anti-Factor VIII Autoantibodies in Acquired Hemophilia1

S. Kaveri, S. Lacroix-Desmazes, J. Dimitrov, 2008, The Journal of Immunology.

Hemophilia Anti-Factor VIII Autoantibodies in Acquired Factor VIII Hydrolysis Mediated

S. Kaveri, S. Lacroix-Desmazes, J. Dimitrov, 2008 .

MutL Protein from the Neisseria gonorrhoeae Mismatch Repair System: Interaction with ATP and DNA

D. Rao, M. Monakhova, E. Kubareva, 2021 .

Explorer Nucleoside triphosphate-dependent restriction enzymes

D. Dryden, N. Murray, D. Rao, 2001 .

Role of histidine residues in EcoP15I DNA methyltransferase activity as probed by chemical modification and site-directed mutagenesis.

D. Rao, P. Jois, N. Madhu, 2008, The Biochemical journal.

Chemistry and biology of DNA methyltransferases.

D. Rao, I. Ahmad, Ishtiyaque Ahmad, 1996, Critical reviews in biochemistry and molecular biology.

Functional analysis of amino acid residues at the dimerisation interface of KpnI DNA methyltransferase

J. Bujnicki, V. Nagaraja, D. Rao, 2006, Biological chemistry.

Comparative Transcriptomics of H. pylori Strains AM5, SS1 and Their hpyAVIBM Deletion Mutants: Possible Roles of Cytosine Methylation

D. Rao, A. Mukhopadhyay, Ritesh Kumar, 2012, PloS one.

Tetramerization at low pH licenses DNA methylation activity of M.HpyAXI in the presence of acid stress.

D. Rao, D. Jain, Rahul Sharma, 2020, Journal of molecular biology.

N4-cytosine DNA methylation regulates transcription and pathogenesis in Helicobacter pylori

R. Morgan, D. Rao, A. Mukhopadhyay, 2018, Nucleic acids research.

Mutations in hpyAVIBM, C5 cytosine DNA methyltransferase from Helicobacter pylori result in relaxed specificity

D. Rao, V. Sabareesh, A. Mukhopadhyay, 2012, The FEBS journal.

Identification of the periplasmic DNA receptor for natural transformation of Helicobacter pylori

D. Rao, J. Radicella, J. Charbonnier, 2019, Nature Communications.

Helicobacter pylori DprA alleviates restriction barrier for incoming DNA

D. Rao, E. Sharma, Gajendradhar R. Dwivedi, 2013, Nucleic acids research.

The C-terminal domain is sufficient for endonuclease activity of Neisseria gonorrhoeae MutL.

D. Rao, P. Friedhoff, C. Urbanke, 2009, The Biochemical journal.

Characterization of mutations of the bacteriophage P1 mod gene encoding the recognition subunit of the EcoP1 restriction and modification system

T. Bickle, D. Rao, H. Eberle, 1989, Journal of bacteriology.

Functional Analysis of Conserved Motifs in Type III. Restriction-Modification Enzymes

D. Rao, S. Saha, I. Ahmad, 1998, Biological chemistry.

Mycobacterium tuberculosis DinG Is a Structure-specific Helicase That Unwinds G4 DNA

D. Rao, G. Nagaraju, R. S. Thakur, 2014, The Journal of Biological Chemistry.

Identification and Mutational Analysis of Mg2+ Binding Site in EcoP15I DNA Methyltransferase

D. Rao, P. Bist, 2003, Journal of Biological Chemistry.

Promiscuous DNA cleavage by HpyAII endonuclease is modulated by the HNH catalytic residues

D. Rao, Sushant Bangru, Sumith Kumar, 2020, Bioscience reports.

Insights into the Functional Roles of N-Terminal and C-Terminal Domains of Helicobacter pylori DprA

D. Rao, Praveen Anand, Gajendradhar R. Dwivedi, 2015, PloS one.

WITHDRAWN: Stimulation of the Mycobacterium tuberculosis transcription elongation by MtbMfd.

V. Nagaraja, D. Rao, Arnab China, 2011, Tuberculosis.

Factor VIII‐hydrolyzing IgG in acquired and congenital hemophilia

S. Kaveri, S. Lacroix-Desmazes, J. Dimitrov, 2009, FEBS letters.

Activation and inhibition of DNA methyltransferases by S-adenosyl-L-homocysteine analogues.

A. Surolia, D. Rao, R. Srivastava, 2008, Bioorganic & medicinal chemistry.

Facile one-pot synthesis of thio and selenourea derivatives: a new class of potent urease inhibitors.

D. Rao, S. Chandrasekaran, V. Saravanan, 2007, Bioorganic & medicinal chemistry letters.

Probing the DNA-binding center of the MutL protein from the Escherichia coli mismatch repair system via crosslinking and Förster resonance energy transfer.

D. Rao, A. Ryazanova, T. Oretskaya, 2020, Biochimie.

Mutational analysis of conserved residues in HhaI DNA methyltransferase.

D. Rao, U. Sankpal, 2002, Nucleic acids research.

Water-assisted Dual Mode Cofactor Recognition by HhaI DNA Methyltransferase*

A. Surolia, D. Rao, C. P. Swaminathan, 2002, The Journal of Biological Chemistry.

DNA mismatch correction in Haemophilus influenzae: characterization of MutL, MutH and their interaction.

D. Rao, Ritwick Sawarkar, N. Joseph, 2004, DNA repair.

R.KpnI, an HNH superfamily REase, exhibits differential discrimination at non-canonical sequences in the presence of Ca2+ and Mg2+

V. Nagaraja, D. Rao, K. Vasu, 2007, Nucleic acids research.

KpnI , an HNH superfamily REase , exhibits differential discrimination at non-canonical sequences in the presence of Ca 2 þ and Mg 2 þ

V. Nagaraja, D. Rao, K. Vasu, 2007 .

Type II restriction endonuclease R.KpnI is a member of the HNH nuclease superfamily.

Janusz M Bujnicki, Valakunja Nagaraja, Iwona A Cymerman, 2004, Nucleic acids research.

Prokaryotic DNA mismatch repair.

D. Rao, N. Joseph, Viswanadham Duppatla, 2006, Progress in nucleic acid research and molecular biology.

Characterization of the restriction enzyme‐like endonuclease encoded by the Entamoeba histolytica non‐long terminal repeat retrotransposon EhLINE1

D. Rao, P. Mandal, S. Bhattacharya, 2009, The FEBS journal.

Molecular dissection of Helicobacter pylori Topoisomerase I reveals an additional active site in the carboxyl terminus of the enzyme.

D. Rao, J. Radicella, G. Gunjal, 2020, DNA repair.

The Role of C5 -cytosine Methyltransferase, hpyAVIBM in Helicobacter pylori Associated Virulence in Mice

Amit Ghosh, D. Rao, A. Mukhopadhyay, 2019 .

The nuclease activities of both the Smr domain and an additional LDLK motif are required for an efficient anti‐recombination function of Helicobacter pylori MutS2

D. Rao, R. Dhanaraju, J. Radicella, 2015, Molecular microbiology.

Role of DNA methyltransferases in epigenetic regulation in bacteria.

D. Rao, Ritesh Kumar, 2013, Sub-cellular biochemistry.

Functional Analysis of an Acid Adaptive DNA Adenine Methyltransferase from Helicobacter pylori 26695

D. Rao, Arunima Banerjee, 2011, PloS one.

Characterization of an N6 adenine methyltransferase from Helicobacter pylori strain 26695 which methylates adjacent adenines on the same strand

D. Rao, A. Mukhopadhyay, Ritesh Kumar, 2010, The FEBS journal.

Structure, function and mechanism of exocyclic DNA methyltransferases.

Shivakumara Bheemanaik, D. Rao, Desirazu N Rao, 2006, The Biochemical journal.

Cloning, over-expression and the catalytic properties of the EcoP15 modification methylase from Escherichia coli.

M. Page, T. Bickle, D. Rao, 1989, Journal of molecular biology.

Mechanistic insights into type III restriction enzymes.

D. Rao, S. Bheemanaik, N. K. Raghavendra, 2012, Frontiers in bioscience.

Structural insights into the molecular mechanisms of the Mycobacterium evolvability factor Mfd

V. Nagaraja, D. Rao, R. Natesh, 2019, bioRxiv.

griffith . edu . au Specificity of the ModA 11 , ModA 12 and ModD 1 epigenetic regulator N 6-adenine DNA methyltransferases of Neisseria meningitidis

Tyson A. Clark, J. Korlach, Matthew Boitano, 2017 .

Specificity of the ModA11, ModA12 and ModD1 epigenetic regulator N6-adenine DNA methyltransferases of Neisseria meningitidis

Tyson A. Clark, J. Korlach, Matthew Boitano, 2015, Nucleic acids research.

Kinetic and Catalytic Properties of Dimeric KpnI DNA Methyltransferase*

Valakunja Nagaraja, Shivakumara Bheemanaik, V. Nagaraja, 2003, The Journal of Biological Chemistry.

The Human Microbiome: An Acquired Organ?

D. Rao, R. Dhanaraju, 2022, Resonance.

MutL Protein from the Neisseria gonorrhoeae Mismatch Repair System: Interaction with ATP and DNA

D. Rao, E. Kubareva, E. Romanova, 2021, Molecular Biology.

The C-Terminal Domain of the MutL Homolog from Neisseria gonorrhoeae Forms an Inverted Homodimer

D. Rao, D. Jain, P. Friedhoff, 2010, PloS one.

Identification of key DNA elements involved in promoter recognition by Mxr1p, a master regulator of methanol utilization pathway in Pichia pastoris.

P. Rangarajan, D. Rao, Ritesh Kumar, 2009, Biochimica et biophysica acta.

Genome Editing Revolution in Life Sciences

S. Chandrasegaran, S. Ramalingam, D. Rao, 2021, Resonance.

Distinct Properties of Hexameric but Functionally Conserved Mycobacterium tuberculosis Transcription-Repair Coupling Factor

V. Nagaraja, D. Rao, S. Prabha, 2011, PloS one.

Evidence for transcription and potential translation of the human 1.9 kb HindIII repetitive element.

D. Rao, S. Kaufman, B. Citron, 1986, Nucleic acids research.

ATP-dependent restriction enzymes.

D. Rao, S. Saha, V. Krishnamurthy, 2000, Progress in nucleic acid research and molecular biology.

Nucleoside triphosphate-dependent restriction enzymes.

D. Dryden, N. Murray, D. Rao, 2001, Nucleic acids research.

MutH complexed with hemi- and unmethylated DNAs: coupling base recognition and DNA cleavage.

R. Ghirlando, D. Rao, Wei Yang, 2005, Molecular cell.

Fast-scan atomic force microscopy reveals that the type III restriction enzyme EcoP15I is capable of DNA translocation and looping

D. Dryden, D. Rao, S. Yoshimura, 2007, Proceedings of the National Academy of Sciences.

Kinetic and catalytic properties of M.HpyAXVII, a phase-variable DNA methyltransferase from Helicobacter pylori

D. Rao, R. Dhanaraju, Ritesh Kumar, 2018, The Journal of Biological Chemistry.

Orchestration of Haemophilus influenzae RecJ exonuclease by interaction with single-stranded DNA-binding protein.

D. Rao, Ruchika Sharma, 2009, Journal of molecular biology.

Structure, Function, and Mechanism of HhaI DNA Methyltransferases

D. Rao, U. Sankpal, 2002, Critical reviews in biochemistry and molecular biology.

Probing the Role of Cysteine Residues in the EcoP15I DNA Methyltransferase*

D. Rao, Y. V. Reddy, 1998, The Journal of Biological Chemistry.

Type III restriction-modification enzymes: a historical perspective

David T. F. Dryden, Shivakumara Bheemanaik, D. Dryden, 2013, Nucleic acids research.

Type III DNA restriction and modification systems EcoP1 and EcoP15. Nucleotide sequence of the EcoP1 operon, the EcoP15 mod gene and some EcoP1 mod mutants.

T. Bickle, D. Hornby, D. Rao, 1988, Journal of molecular biology.

DNA looping and translocation provide an optimal cleavage mechanism for the type III restriction enzymes

D. Dryden, D. Rao, R. Henderson, 2007, The EMBO journal.

Mutations in the Res subunit of the EcoPI restriction enzyme that affect ATP-dependent reactions.

D. Rao, S. Saha, 1997, Journal of molecular biology.

Generation of Catalytic Antibodies Is an Intrinsic Property of an Individual’s Immune System: A Study on a Large Cohort of Renal Transplant Patients

S. Kaveri, S. Lacroix-Desmazes, D. Rao, 2016, The Journal of Immunology.

Functional characterization of UvrD helicases from Haemophilus influenzae and Helicobacter pylori

D. Rao, Ruchika Sharma, 2012, The FEBS journal.

ATP hydrolysis is required for DNA cleavage by EcoPI restriction enzyme.

D. Rao, S. Saha, 1995, Journal of molecular biology.

Purification and Regulatory Properties of Mung Bean (Vigna Radiata L.) Serine Hydroxymethyltransferase'

D. Rao, N. Rao, 2022 .

Functional analysis of conserved motifs in EcoP15I DNA methyltransferase.

D. Rao, I. Ahmad, 1996, Journal of molecular biology.

S-Adenosyl-L-methionine–Dependent Restriction Enzymes

D. Rao, S. Sistla, 2004, Critical reviews in biochemistry and molecular biology.

Unidirectional translocation from recognition site and a necessary interaction with DNA end for cleavage by Type III restriction enzyme.

D. Rao, N. K. Raghavendra, 2004, Nucleic acids research.

A nucleotide insertion between two adjacent methyltransferases in Helicobacter pylori results in a bifunctional DNA methyltransferase.

D. Rao, Ritesh Kumar, 2011, The Biochemical journal.

Mechanism of formation of a toroid around DNA by the mismatch sensor protein

D. Rao, D. Nair, S. Nirwal, 2017, Nucleic acids research.

Antibody-mediated catalysis: induction and therapeutic relevance.

S. Kaveri, S. Lacroix-Desmazes, J. Dimitrov, 2013, Autoimmunity reviews.

Catalytic antibodies: Concept and promise

D. Rao, B. Wootla, 2007 .

Guardians of the Genome

D. Rao, Yedu Prasad, 2016 .

DNA recognition by the EcoP15I and EcoPI modification methyltransferases.

D. Rao, I. Ahmad, V. Krishnamurthy, 1995, Gene.

Photolabeling of the EcoP15 DNA methyltransferase with S-adenosyl-L-methionine.

D. Rao, I. Ahmad, 1994, Gene.

S-adenosyl-L-methionine is required for DNA cleavage by type III restriction enzymes.

D. Rao, P. Bist, A. Acharya, 2001, Journal of molecular biology.

Escherichia coli and Neisseria gonorrhoeae UvrD helicase unwinds G4 DNA structures.

D. Rao, G. Nagaraju, R. S. Thakur, 2017, The Biochemical journal.

CRISPR correction of GBA mutation in hiPSCs restores normal function to Gaucher macrophages and increases their susceptibility to Mycobacterium tuberculosis

W. Bishai, S. Chandrasegaran, S. Ramalingam, 2022, bioRxiv.

Mutations in the nucleotide binding and hydrolysis domains of Helicobacter pylori MutS2 lead to altered biochemical activities and inactivation of its in vivo function

D. Rao, R. Dhanaraju, J. Radicella, 2016, BMC Microbiology.

Functional characterization of the DNA mismatch binding protein MutS from Haemophilus influenzae.

D. Rao, N. Joseph, Viswanadham Duppatla, 2005, Biochemical and biophysical research communications.

Exogenous AdoMet and its analogue sinefungin differentially influence DNA cleavage by R.EcoP15I--usefulness in SAGE.

D. Rao, N. K. Raghavendra, 2005, Biochemical and biophysical research communications.

Binding of EcoP15I DNA methyltransferase to DNA reveals a large structural distortion within the recognition sequence.

D. Rao, Y. V. Reddy, 2000, Journal of molecular biology.

Single-stranded DNA binding and methylation by EcoP1I DNA methyltransferase.

D. Rao, V. Krishnamurthy, S. Sistla, 2004, Biochemical and biophysical research communications.

Escherichia coli and Neisseria gonorrhoeae UvrD helicase unwinds G4 DNA structures.

D. Rao, G. Nagaraju, R. S. Thakur, 2017, The Biochemical journal.

DNA repair systems

D. Rao, Yedu Prasad, 2016, Resonance.

Synthesis of β-Diketone DNA Derivatives for Affinity Modification of Proteins

D. Rao, M. Monakhova, T. Oretskaya, 2019, Russian Journal of Bioorganic Chemistry.