Xueping Yu

发表

Influence of Protein Abundance on High-Throughput Protein-Protein Interaction Detection

J. Reifman, A. Wallqvist, J. Ivanic, 2009, PloS one.

Analysis of regulatory network topology reveals functionally distinct classes of microRNAs

D. Zack, J. Mendell, Jiang Qian, 2008, Nucleic acids research.

Systems biology approaches for discovering biomarkers for traumatic brain injury.

Jaques Reifman, Chenggang Yu, Bhaskar Dutta, 2013, Journal of neurotrauma.

Computational analysis of tissue-specific combinatorial gene regulation: predicting interaction between transcription factors in human tissues

D. Zack, Jiang Qian, Xueping Yu, 2006, Nucleic acids research.

Categorizing Biases in High-Confidence High-Throughput Protein-Protein Interaction Data Sets*

Jaques Reifman, Anders Wallqvist, Vesna Memišević, 2011, Molecular & Cellular Proteomics.

Data-driven prediction of adverse drug reactions induced by drug-drug interactions

Jaques Reifman, Ruifeng Liu, Anders Wallqvist, 2017, BMC Pharmacology and Toxicology.

Novel Burkholderia mallei Virulence Factors Linked to Specific Host-Pathogen Protein Interactions

J. Reifman, S. Rajagopala, Vesna Memisevic, 2013, Molecular & Cellular Proteomics.

A systems biology strategy to identify molecular mechanisms of action and protein indicators of traumatic brain injury

J. Reifman, A. Wallqvist, J. Feala, 2014, Journal of neuroscience research.

Inferring high-confidence human protein-protein interactions

J. Reifman, A. Wallqvist, Xueping Yu, 2012, BMC Bioinformatics.

TiGER: A database for tissue-specific gene expression and regulation

Jiang Qian, Xiong Liu, Heng Zhu, 2008, BMC Bioinformatics.

Identification of tissue-specific cis-regulatory modules based on interactions between transcription factors

Jiang Qian, Xueping Yu, C. Jimmy Lin, 2007, BMC Bioinformatics.

Genome-wide prediction and characterization of interactions between transcription factors in Saccharomyces cerevisiae

Xueping Yu, Donald J. Zack, Jiang Qian, 2006, Nucleic acids research.

A strategy for evaluating pathway analysis methods

J. Reifman, A. Wallqvist, Xueping Yu, 2017, BMC Bioinformatics.

Profiling the Human Protein-DNA Interactome Reveals ERK2 as a Transcriptional Repressor of Interferon Signaling

S. Blackshaw, Xueping Yu, Shaohui Hu, 2009, Cell.

Data-driven identification of structural alerts for mitigating the risk of drug-induced human liver injuries

Ruifeng Liu, Anders Wallqvist, Xueping Yu, 2015, Journal of Cheminformatics.

Molecular characteristics of liver metastases from uveal melanoma.

I. Simon, I. Chowers, Xueping Yu, 2007, Investigative ophthalmology & visual science.

A Novel Scoring Approach for Protein Co-Purification Data Reveals High Interaction Specificity

Jaques Reifman, Anders Wallqvist, Joseph Ivanic, 2009, PLoS Comput. Biol..

Using Chemical-Induced Gene Expression in Cultured Human Cells to Predict Chemical Toxicity.

Ruifeng Liu, Anders Wallqvist, Xueping Yu, 2016, Chemical research in toxicology.

Characterization of Chemically Induced Liver Injuries Using Gene Co-Expression Modules

Anders Wallqvist, Mohamed Diwan M. AbdulHameed, Gregory J. Tawa, 2014, PloS one.

Identification of tissue-specific cis-regulatory modules based on interactions between transcription factors

D. Zack, Xueping Yu, Jimmy Lin, 2007 .

TiGER: A database for tissue-specific gene expression and regulation

D. Zack, Xiong Liu, Xueping Yu, 2008, BMC Bioinformatics.

A strategy for evaluating pathway analysis methods

Jaques Reifman, Chenggang Yu, Anders Wallqvist, 2017, BMC Bioinformatics.

Identification of tissue-specific cis-regulatory modules based on interactions between transcription factors

D. Zack, Xueping Yu, Jimmy Lin, 2007, BMC Bioinformatics.

Inferring high-confidence human protein-protein interactions

Jaques Reifman, Anders Wallqvist, Xueping Yu, 2012, BMC Bioinformatics.