I. Junier

发表

CTCF-mediated transcriptional regulation through cell type-specific chromosome organization in the β-globin locus

Ryan K. Dale, F. Képès, I. Junier, 2012, Nucleic acids research.

On the demultiplexing of chromosome capture conformation data

Ivan Junier, Yannick G. Spill, Marc A Marti-Renom, 2015, FEBS letters.

Microscopic realizations of the trap model

J. Kurchan, I. Junier, 2003, cond-mat/0311158.

Assessing the limits of restraint-based 3D modeling of genomes and genomic domains

Ivan Junier, François Serra, Marc A Marti-Renom, 2015, Nucleic acids research.

A Two-Enzyme Adaptive Unit within Bacterial Folate Metabolism.

Andrew D. Mathis, Kimberly A. Reynolds, O. Rivoire, 2019, Cell reports.

Polymer modeling of the E. coli genome reveals the involvement of locus positioning and macrodomain structuring for the control of chromosome conformation and segregation

Ivan Junier, I. Junier, O. Espéli, 2013, Nucleic acids research.

A two-enzyme adaptive unit in bacterial folate metabolism

Kimberly A. Reynolds, O. Rivoire, J. Rabinowitz, 2018 .

A two-enzyme adaptive unit within bacterial folate metabolism

Andrew D. Mathis, Kimberly A. Reynolds, O. Rivoire, 2017, bioRxiv.

Conserved units of co-expression in bacterial genomes: an evolutionary insight into gene regulation

O. Rivoire, I. Junier, 2014, bioRxiv.

Insights into the Mechanisms of Basal Coordination of Transcription Using a Genome-Reduced Bacterium

I. Junier, L. Serrano, E. Yus, 2016, Cell systems.

Conserved Units of Co-Expression in Bacterial Genomes: An Evolutionary Insight into Transcriptional Regulation

O. Rivoire, I. Junier, 2016, PloS one.

Insights into the Mechanis ms of Basal Coordination of Transcription Using a Genome-Reduced Bacterium Graphical Abstract Highlights

I. Junier, L. Serrano, E. Yus, 2016 .

Thermodynamics of long supercoiled molecules: insights from highly efficient Monte Carlo simulations.

F. Képès, I. Junier, Thibaut Lepage, 2015, Biophysical journal.

Dynamics of the compartmentalized Streptomyces chromosome during metabolic differentiation

N. Varoquaux, I. Junier, Y. Jaszczyszyn, 2020, Nature Communications.

Microscopic realizations of the trap model

J. Kurchan, I. Junier, 2003, cond-mat/0311158.

Assessing in vivo the impact of gene context on transcription through DNA supercoiling

O. Rivoire, I. Junier, O. Espéli, 2022, bioRxiv.

Local-energy approach to the dynamic glass transition

I. Junier, 2006, cond-mat/0603584.

Spatial Information to Restrict the Dynamics of Genetic Regulatory Networks ⋆

F. Képès, I. Junier, P. L. Gall, 2008 .

Stable Community Cores in Complex Networks

Jean-Loup Guillaume, Ivan Junier, Jean-Baptiste Rouquier, 2012, CompleNet.

Conserved patterns in bacterial genomes: A conundrum physically tailored by evolutionary tinkering

Ivan Junier, I. Junier, 2014, Comput. Biol. Chem..

Spatial and Topological Organization of DNA Chains Induced by Gene Co-localization

Ivan Junier, François Képès, Olivier C. Martin, 2010, PLoS Comput. Biol..

PreCisIon: PREdiction of CIS-regulatory elements improved by gene's positION.

Ivan Junier, François Képès, Mohamed Elati, 2013, Nucleic acids research.

The layout of a bacterial genome

Ivan Junier, Thibaut Lepage, François Képès, 2012, FEBS letters.

Distinct activities of bacterial condensins for chromosome management in Pseudomonas aeruginosa

I. Junier, Valentine Lagage, F. Boccard, 2020, bioRxiv.

Force-induced misfolding in RNA.

F. Ritort, I. Junier, M. Manosas, 2008, Physical review. E, Statistical, nonlinear, and soft matter physics.

From structure to function of bacterial chromosomes: Evolutionary perspectives and ideas for new experiments

Ivan Junier, Marco Cosentino Lagomarsino, I. Junier, 2015, FEBS letters.

Intracellular positioning systems limit the entropic eviction of secondary replicons toward the nucleoid edges in bacterial cells.

E. Rocha, P. Siguier, I. Junier, 2020, Journal of molecular biology.

Genomic organization of evolutionarily correlated genes in bacteria: limits and strategies.

Ivan Junier, Joan Hérisson, François Képès, 2012, Journal of molecular biology.

Bacterial chromosome segregation.

Ivan Junier, I. Junier, O. Espéli, 2012, Frontiers in bioscience.

Periodic pattern detection in sparse boolean sequences

Ivan Junier, Joan Hérisson, François Képès, 2010, Algorithms for Molecular Biology.

Universal and idiosyncratic characteristic lengths in bacterial genomes

Ivan Junier, Olivier Rivoire, O. Rivoire, 2018, Physical biology.

Requirements for DNA-Bridging Proteins to Act as Topological Barriers of the Bacterial Genome

I. Junier, M. Joyeux, 2020, Biophysical Journal.

Evolution of Ubiquinone Biosynthesis: Multiple Proteobacterial Enzymes with Various Regioselectivities To Catalyze Three Contiguous Aromatic Hydroxylation Reactions

D. Schneider, I. Junier, F. Barras, 2016, mSystems.

Distinct Activities of Bacterial Condensins for Chromosome Management in Pseudomonas aeruginosa.

I. Junier, Valentine Lagage, F. Boccard, 2020, Cell reports.

DNA supercoiling in bacteria : state of play and challenges from a modeling viewpoint

I. Junier, O. Espéli, R. Everaers, 2023 .

A polymer model of bacterial supercoiled DNA including structural transitions of the double helix

I. Junier, Thibaut Lepage, 2019, Physica A: Statistical Mechanics and its Applications.

Modeling Bacterial DNA: Simulation of Self-Avoiding Supercoiled Worm-Like Chains Including Structural Transitions of the Helix.

I. Junier, Thibaut Lepage, 2017, Methods in molecular biology.

Supercoiled DNA and non-equilibrium formation of protein complexes: A quantitative model of the nucleoprotein ParBS partition complex

I. Junier, A. Parmeggiani, Thibaut Lepage, 2021, PLoS Comput. Biol..

Boosting Binding Sites Prediction Using Gene's Positions

Ivan Junier, Joan Hérisson, François Képès, 2011, WABI.

Experimental free-energy measurements of kinetic molecular states using fluctuation theorems

F. Ritort, Anna Alemany, I. Junier, 2012, Nature Physics.

Dynamic phase diagram of the number partitioning problem.

E. Bertin, I. Junier, 2004, Physical review. E, Statistical, nonlinear, and soft matter physics.

Multiscale Dynamic Structuring of Bacterial Chromosomes.

I. Junier, F. Boccard, Virginia S. Lioy, 2021, Annual review of microbiology.

Tailoring symmetry groups using external alternate fields

J. Kurchan, I. Junier, 2002, cond-mat/0209231.

circHiC: circular visualization of Hi-C data and integration of genomic data

Ivan Junier, Nelle Varoquaux, N. Varoquaux, 2020, bioRxiv.

Single‐domain protein folding: a multi‐faceted problem

F. Ritort, I. Junier, 2006, 0810.3042.

Unstructured intermediate states in single protein force experiments

F. Ritort, I. Junier, 2008, Proteins.

DNA supercoiling in bacteria: state of play and challenges from a viewpoint of physics based modeling

I. Junier, O. Espéli, Elham Ghobadpour, 2023, Frontiers in microbiology.

Assessing in vivo the impact of gene context on transcription through DNA supercoiling

O. Rivoire, I. Junier, O. Espéli, 2023, bioRxiv.