I. Georgakopoulos-Soares

发表

Characterizing Mutational Signatures in Human Cancer Cell Lines Reveals Episodic APOBEC Mutagenesis

M. Stratton, B. Ng, P. Campbell, 2019, Cell.

Asymmetron: a toolkit for the identification of strand asymmetry patterns in biological sequences

M. Hemberg, Navneet Matharu, N. Ahituv, 2020, Nucleic acids research.

EMT Factors and Metabolic Pathways in Cancer

I. Georgakopoulos-Soares, D. Chartoumpekis, A. Zaravinos, 2020, Frontiers in Oncology.

A practical framework and online tool for mutational signature analyses show intertissue variation and driver dependencies

S. Morganella, H. Davies, S. Nik-Zainal, 2020, Nature Cancer.

MicroExonator enables systematic discovery and quantification of microexons across mouse embryonic development

E. Miska, M. Hemberg, I. Georgakopoulos-Soares, 2020, Genome Biology.

Absent from DNA and protein: genomic characterization of nullomers and nullpeptides across functional categories and evolution

O. Barnea, M. Hemberg, N. Ahituv, 2020, Genome Biology.

Alternative splicing modulation by G-quadruplexes

E. Miska, M. Hemberg, C. Kwok, 2019, Nature Communications.

Secondary structures in RNA synthesis, splicing and translation

M. Hemberg, I. Georgakopoulos-Soares, Guillermo E. Parada, 2022, Computational and structural biotechnology journal.

Distinct genomic features across cytolytic subgroups in skin melanoma

I. Georgakopoulos-Soares, A. Zaravinos, Constantinos Roufas, 2020, Cancer Immunology, Immunotherapy.

High-throughput techniques enable advances in the roles of DNA and RNA secondary structures in transcriptional and post-transcriptional gene regulation

M. Hemberg, N. Ahituv, I. Georgakopoulos-Soares, 2022, Genome biology.

MPRAnator: a web-based tool for the design of massively parallel reporter assay experiments

Naman Jain, Martin Hemberg, Ilias Georgakopoulos-Soares, 2015, bioRxiv.

Noncanonical secondary structures arising from non-B DNA motifs are determinants of mutagenesis

S. Morganella, S. Nik-Zainal, M. Hemberg, 2017, bioRxiv.

Molecular correlates of immune cytolytic subgroups in colorectal cancer by integrated genomics analysis

I. Georgakopoulos-Soares, A. Zaravinos, Constantinos Roufas, 2021, NAR cancer.

Integrative single-cell characterization of frugivory adaptations in the bat kidney and pancreas

Insuk Lee, M. Hemberg, N. Ahituv, 2023, bioRxiv.

The Transcriptomic Response of the Murine Thyroid Gland to Iodide Overload and the Role of the Nrf2 Antioxidant System

A. C. Marques, I. Georgakopoulos-Soares, I. Trougakos, 2020, Antioxidants.

Leveraging sequences missing from the human genome to diagnose cancer

J. Witte, M. Hemberg, N. Ahituv, 2021, medRxiv.

Deletion of CTCF sites in the SHH locus alters enhancer–promoter interactions and leads to acheiropodia

D. Nickerson, Yin Shen, M. Bamshad, 2021, Nature Communications.

High-throughput characterization of the role of non-B DNA motifs on promoter function

Stephan J Sanders, Vikram Agarwal, M. Hemberg, 2022, Cell genomics.

lentiMPRA and MPRAflow for high-throughput functional characterization of gene regulatory elements

Chun Jimmie Ye, J. Shendure, K. Pollard, 2020, Nature Protocols.

Risk scoring based on DNA methylation-driven related DEGs for colorectal cancer prognosis with systematic insights.

Ka-chun Wong, N. Ahituv, I. Georgakopoulos-Soares, 2023, Life sciences.

Strand asymmetries across genomic processes

I. Georgakopoulos-Soares, A. Zaravinos, Camille Moeckel, 2023, Computational and structural biotechnology journal.

Author Correction: lentiMPRA and MPRAflow for high-throughput functional characterization of gene regulatory elements

Nir Yosef, Jingjing Zhao, Anat Kreimer, 2020, Nature Protocols.

Deregulated Gene Expression Profiles and Regulatory Networks in Adult and Pediatric RUNX1/RUNX1T1-Positive AML Patients

I. Georgakopoulos-Soares, A. Zaravinos, P. Kanellou, 2023, Cancers.

The Efficacy of Tumor Mutation Burden as a Biomarker of Response to Immune Checkpoint Inhibitors

I. Georgakopoulos-Soares, A. Zaravinos, Camille Moeckel, 2023, International journal of molecular sciences.

On the use of the Perlin noise function to calculate the laser absorption coefficient by rough surfaces

I. Georgakopoulos-Soares, E. Papazoglou, A. Markopoulos, 2023, Simul. Model. Pract. Theory.

Author Correction: A practical framework and online tool for mutational signature analyses show intertissue variation and driver dependencies

Andrea Degasperi, Sandro Morganella, Xueqing Zou, 2020, Nature Cancer.

Transcription factor binding site orientation and order are major drivers of gene regulatory activity

Vikram Agarwal, N. Ahituv, I. Georgakopoulos-Soares, 2023, Nature communications.

Transcription-coupled repair and mismatch repair contribute towards preserving genome integrity at mononucleotide repeat tracts

S. Nik-Zainal, M. Hemberg, I. Georgakopoulos-Soares, 2019, bioRxiv.

Utilizing nullomers in cell-free RNA for early cancer detection

I. Georgakopoulos-Soares, I. Mouratidis, C. Chan, 2023, medRxiv.

MicroExonator enables systematic discovery and quantification of microexons across mouse embryonic development

E. Miska, M. Hemberg, I. Georgakopoulos-Soares, 2021, Genome Biology.

Peptide absent sequences emerging in human cancers.

I. Georgakopoulos-Soares, A. Zaravinos, I. Mouratidis, 2023, European journal of cancer.

Quasi-prime peptides: identification of the shortest peptide sequences unique to a species

M. Hemberg, N. Ahituv, I. Georgakopoulos-Soares, 2023, NAR genomics and bioinformatics.

Frequentmers - a novel way to look at metagenomic next generation sequencing data and an application in detecting liver cirrhosis

I. Georgakopoulos-Soares, I. Mouratidis, Manvita Mareboina, 2023, BMC Genomics.

MPRAnator: a web-based tool for the design of massively parallel reporter assay experiments

M. Hemberg, Jesse M. Gray, I. Georgakopoulos-Soares, 2015, bioRxiv.