S. Purvine

发表

DeconMSn: a software tool for accurate parent ion monoisotopic mass determination for tandem mass spectra

Navdeep Jaitly, Joshua N. Adkins, Richard D. Smith, 2008, Bioinform..

Mixed-effects statistical model for comparative LC-MS proteomics studies.

K. Anderson, M. Monroe, D. Daly, 2008, Journal of proteome research.

Activity-based protein profiling of secreted cellulolytic enzyme activity dynamics in Trichoderma reesei QM6a, NG14, and RUT-C30.

Stephen J. Callister, Richard D. Smith, S. Purvine, 2013, Molecular bioSystems.

Proteomic Detection of Non-Annotated Protein-Coding Genes in Pseudomonas fluorescens Pf0-1

Carrie D. Nicora, Mary S. Lipton, K. Hixson, 2009, PloS one.

Circadian Proteomic Analysis Uncovers Mechanisms of Post-Transcriptional Regulation in Metabolic Pathways.

Alexander M. Crowell, Meaghan S. Jankowski, Anil K. Shukla, 2018, Cell systems.

Omic data from evolved E. coli are consistent with computed optimal growth from genome-scale models

Tom M. Conrad, Richard D. Smith, B. Palsson, 2010, Molecular systems biology.

Effectiveness of CID, HCD, and ETD with FT MS/MS for degradomic-peptidomic analysis: comparison of peptide identification methods.

Ronald J. Moore, Richard D. Smith, G. Anderson, 2011, Journal of proteome research.

Establishing the Proteome of Normal Human Cerebrospinal Fluid

Richard D. Smith, T. Liu, D. Camp, 2010, PloS one.

Evaluation of Multiprotein Immunoaffinity Subtraction for Plasma Proteomics and Candidate Biomarker Discovery Using Mass Spectrometry*S

Ronald J. Moore, Richard D. Smith, D. Camp, 2006, Molecular & Cellular Proteomics.

Proteogenomics: needs and roles to be filled by proteomics in genome annotation.

Richard D. Smith, J. Adkins, M. Lipton, 2008, Briefings in functional genomics & proteomics.

Shotgun collision‐induced dissociation of peptides using a time of flight mass analyzer

D. Goodlett, E. Yi, S. Purvine, 2003, Proteomics.

Proteomic analysis of Pseudomonas aeruginosa grown under magnesium limitation

Samuel I. Miller, R. Aebersold, J. Eng, 2003, Journal of the American Society for Mass Spectrometry.

De novo sequencing of unique sequence tags for discovery of post-translational modifications of proteins.

Richard D. Smith, K. Hixson, G. Anderson, 2008, Analytical chemistry.

Mass spectrometry analysis of proteome-wide proteolytic post-translational degradation of proteins.

Ronald J. Moore, Richard D. Smith, D. Camp, 2008, Analytical chemistry.

Blood Peptidome-Degradome Profile of Breast Cancer

Ronald J. Moore, Richard D. Smith, Brianne Petritis, 2010, PloS one.

Proteomic Analysis of Salmonella enterica Serovar Typhimurium Isolated from RAW 264.7 Macrophages

Richard D. Smith, H. Mottaz, J. Adkins, 2006, Journal of Biological Chemistry.

In situ transformation of ethoxylate and glycol surfactants by shale-colonizing microorganisms during hydraulic fracturing

D. Hoyt, M. Lipton, T. Metz, 2019, The ISME Journal.

Sulfide Generation by Dominant Halanaerobium Microorganisms in Hydraulically Fractured Shales

D. Hoyt, M. Lipton, S. Purvine, 2017, mSphere.

Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants

Stephen J. Callister, Richard D. Smith, M. V. van Baren, 2016, BMC Genomics.

Feathermoss and epiphytic Nostoc cooperate differently: expanding the spectrum of plant–cyanobacteria symbiosis

R. A. Richter, Rhona K. Stuart, N. Shapiro, 2017, The ISME Journal.

Tandem mass spectrometry identifies many mouse brain O-GlcNAcylated proteins including EGF domain-specific O-GlcNAc transferase targets

Matthew E Monroe, Feng Yang, Samuel O Purvine, 2012, Proceedings of the National Academy of Sciences.

Quantitative cardiac phosphoproteomics profiling during ischemia-reperfusion in an immature swine model.

Ljiljana Paša-Tolić, Samuel O. Purvine, L. Paša-Tolić, 2017, American journal of physiology. Heart and circulatory physiology.

Experimental annotation of post-translational features and translated coding regions in the pathogen Salmonella Typhimurium

Meagan C. Burnet, Samuel H. Payne, Richard D. Smith, 2011, BMC Genomics.

Targeted Protein Degradation by Salmonella under Phagosome-mimicking Culture Conditions Investigated Using Comparative Peptidomics*S

Matthew E Monroe, Fred Heffron, Thomas O Metz, 2007, Molecular & Cellular Proteomics.

Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations.

Gordon A Anderson, John R Yates, Monica Riley, 2005, Proceedings of the National Academy of Sciences of the United States of America.

Coupled transcriptome and proteome analysis of human lymphotropic tumor viruses: insights on the detection and discovery of viral genes

Yuan Chang, Marina A Gritsenko, Samuel O Purvine, 2011, BMC Genomics.

Human Proteinpedia enables sharing of human protein data

Y. L. Ramachandra, Christine A. Miller, J. Bader, 2008, Nature Biotechnology.

Identifying Aspects of the Post-Transcriptional Program Governing the Proteome of the Green Alga Micromonas pusilla

Joshua M. Stuart, Stephen J. Callister, Richard D. Smith, 2016, PloS one.

Cell Host & Microbe Resource Integrated Omics Analysis of Pathogenic Host Responses during Pandemic H 1 N 1 Influenza Virus Infection : The Crucial Role of Lipid Metabolism

Richard D. Smith, Xinxia Peng, M. Katze, 2022 .

Identification of widespread adenosine nucleotide binding in Mycobacterium tuberculosis.

Samuel H. Payne, Anil K. Shukla, Richard D. Smith, 2013, Chemistry & biology.

Cell‐Type‐Specific Proteomics Analysis of a Small Number of Plant Cells by Integrating Laser Capture Microdissection with a Nanodroplet Sample Processing Platform

C. N. Stewart, L. Paša-Tolić, S. Purvine, 2021, Current protocols.

Proteomics-based compositional analysis of complex cellulase-hemicellulase mixtures.

Venkatesh Balan, B. Dale, M. Lipton, 2011, Journal of proteome research.

Multi-omics analysis reveals regulators of the response to nitrogen limitation in Yarrowia lipolytica

T. Metz, Young-Mo Kim, S. Purvine, 2016, BMC Genomics.

Simultaneous Proteomic Discovery and Targeted Monitoring using Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry*

Yehia M. Ibrahim, Ronald J. Moore, Kristin E. Burnum-Johnson, 2016, Molecular & Cellular Proteomics.

Lignin depolymerization by fungal secretomes and a microbial sink

B. Simmons, S. Purvine, G. Beckham, 2016 .

A method for selective enrichment and analysis of nitrotyrosine-containing peptides in complex proteome samples.

Ronald J. Moore, Richard D. Smith, D. Camp, 2007, Journal of proteome research.

MERS-CoV and H5N1 influenza virus antagonize antigen presentation by altering the epigenetic landscape

Lisa E. Gralinski, Kristin E. Burnum-Johnson, Kevin B. Walters, 2018, Proceedings of the National Academy of Sciences.

Interspecies cross-feeding orchestrates carbon degradation in the rumen ecosystem

D. Hoyt, M. Lipton, S. Purvine, 2018, Nature Microbiology.

Dichomitus squalens partially tailors its molecular responses to the composition of solid wood

D. Dilworth, R. D. de Vries, Young-Mo Kim, 2018, Environmental microbiology.

Ant Fungus Gardens Recalcitrant Plant Polymers in Leaf-Cutter Diverse Enzymes for the Degradation of Leucoagaricus gongylophorus Produces

Richard D. Smith, G. Weinstock, N. Gerardo, 2013 .

The Chlamydomonas Genome Project, version 6: Reference assemblies for mating-type plus and minus strains reveal extensive structural mutation in the laboratory

S. Shu, Y. Yoshinaga, J. Grimwood, 2022, bioRxiv.

Integrated systems biology and imaging of the smallest free-living eukaryote Ostreococcus tauri

James E. Evans, Ronald J. Moore, G. McDermott, 2018, bioRxiv.

Discovering Mercury Protein Modifications in Whole Proteomes Using Natural Isotope Distributions Observed in Liquid Chromatography-Tandem Mass Spectrometry*

B. Polacco, M. Lipton, S. Purvine, 2011, Molecular & Cellular Proteomics.

Combined pulsed-Q dissociation and electron transfer dissociation for identification and quantification of iTRAQ-labeled phosphopeptides.

Ronald J. Moore, Richard D. Smith, D. Camp, 2009, Analytical chemistry.

Functional Genomics, Transcriptomics, and Proteomics Reveal Distinct Combat Strategies Between Lineages of Wood-Degrading Fungi With Redundant Wood Decay Mechanisms

S. Purvine, J. Schilling, Jiwei Zhang, 2020, Frontiers in Microbiology.

Proteomics informed by transcriptomics identifies novel secreted proteins in Dermacentor andersoni saliva.

T. Clauss, S. Purvine, C. Nicora, 2014, International journal for parasitology.

Leucine Biosynthesis Is Involved in Regulating High Lipid Accumulation in Yarrowia lipolytica

Thomas L. Fillmore, Richard D. Smith, B. Webb-Robertson, 2017, mBio.

The Specific Carbohydrate Diet and Diet Modification as Induction Therapy for Pediatric Crohn’s Disease: A Randomized Diet Controlled Trial

W. Nelson, J. Jansson, M. Lipton, 2020, Nutrients.

Approaching complete peroxisome characterization by gas‐phase fractionation

R. Aebersold, D. Goodlett, J. Aitchison, 2002, Electrophoresis.

Novel Ser/Thr protein phosphatase 5 (PP5) regulated targets during DNA damage identified by proteomics analysis.

Richard D. Smith, Navdeep Jaitly, D. Camp, 2010, Journal of proteome research.

Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens

Paul D Piehowski, Samuel O Purvine, Carrie D Nicora, 2012, The ISME Journal.

Addressing the challenge of soil metaproteome complexity by improving metaproteome depth of coverage through two-dimensional liquid chromatography

Meagan C. Burnet, Ronald J. Moore, Stephen J. Callister, 2018, Soil Biology and Biochemistry.

Targeted curation of the gut microbial gene content modulating human cardiovascular disease

Elizabeth K. Eder, D. Hoyt, M. Lipton, 2022, bioRxiv.

Phosphoproteomics Profiling of Human Skin Fibroblast Cells Reveals Pathways and Proteins Affected by Low Doses of Ionizing Radiation

Richard D. Smith, D. Camp, M. Monroe, 2010, PloS one.

DtaRefinery, a Software Tool for Elimination of Systematic Errors from Parent Ion Mass Measurements in Tandem Mass Spectra Data Sets*

Gordon A. Anderson, Ashoka D. Polpitiya, Anoop M. Mayampurath, 2009, Molecular & Cellular Proteomics.

Spatial Phosphoprotein Profiling Reveals a Compartmentalized Extracellular Signal-regulated Kinase Switch Governing Neurite Growth and Retraction*

Richard D. Smith, D. Camp, M. Gritsenko, 2011, The Journal of Biological Chemistry.

Quantitative iTRAQ-based secretome analysis reveals species-specific and temporal shifts in carbon utilization strategies among manganese(II)-oxidizing Ascomycete fungi.

L. Paša-Tolić, S. Purvine, E. Zink, 2017, Fungal genetics and biology : FG & B.

Identification of disulfide bonds in protein proteolytic degradation products using de novo-protein unique sequence tags approach.

Richard D. Smith, S. Purvine, Yufeng Shen, 2010, Journal of proteome research.

Proteomic analysis reveals down-regulation of surfactant protein B in murine type II pneumocytes infected with influenza A virus.

Thomas L. Fillmore, Richard D. Smith, M. Gritsenko, 2015, Virology.

Specialized proteomic responses and an ancient photoprotection mechanism sustain marine green algal growth during phosphate limitation

Stephen J. Callister, Richard D. Smith, S. Purvine, 2018, Nature Microbiology.

Microbial Genome-Resolved Metaproteomic Analyses Frame Intertwined Carbon and Nitrogen Cycles in River Hyporheic Sediments

Elizabeth K. Eder, D. Hoyt, M. Lipton, 2021 .

Activity-Based Probes for Isoenzyme- and Site-Specific Functional Characterization of Glutathione S-Transferases.

Anil K. Shukla, Natalie C. Sadler, S. Purvine, 2017, Journal of the American Chemical Society.

Coupling Secretomics with Enzyme Activities To Compare the Temporal Processes of Wood Metabolism among White and Brown Rot Fungi

S. Purvine, E. Panisko, J. Schilling, 2018, Applied and Environmental Microbiology.

Applying a targeted label-free approach using LC-MS AMT tags to evaluate changes in protein phosphorylation following phosphatase inhibition.

Ronald J. Moore, Richard D. Smith, Navdeep Jaitly, 2007, Journal of proteome research.

Intracellular pathways for lignin catabolism in white-rot fungi

Meagan C. Burnet, Elizabeth K. Eder, M. Himmel, 2021, Proceedings of the National Academy of Sciences.

for fungal cellulosomes revealed by comparative genomics.

Kevin V. Solomon, Sean P. Gilmore, A. Salamov, 2017 .

Strategy for degradomic-peptidomic analysis of human blood plasma.

Ronald J Moore, Nikola Tolić, Rui Zhao, 2010, Journal of proteome research.

Early-branching gut fungi possess a large, comprehensive array of biomass-degrading enzymes

Kevin V. Solomon, Sean P. Gilmore, D. Thompson, 2016, Science.

Anaerobic gut fungi are an untapped reservoir of natural products

Kevin V. Solomon, A. Salamov, S. Purvine, 2021, Proceedings of the National Academy of Sciences.

Soil metabolome response to whole-ecosystem warming at the Spruce and Peatland Responses under Changing Environments experiment

Elizabeth K. Eder, D. Hoyt, C. Schadt, 2021, Proceedings of the National Academy of Sciences.

Leucoagaricus gongylophorus Produces Diverse Enzymes for the Degradation of Recalcitrant Plant Polymers in Leaf-Cutter Ant Fungus Gardens

Richard D. Smith, S. Tringe, G. Weinstock, 2013, Applied and Environmental Microbiology.

Structural reorganization of the fungal endoplasmic reticulum upon induction of mycotoxin biosynthesis

S. Purvine, S. Baker, W. Chrisler, 2017, Scientific Reports.

Comparative Analysis of Secretome Profiles of Manganese(II)-Oxidizing Ascomycete Fungi

B. Henrissat, L. Paša-Tolić, S. Purvine, 2016, PloS one.

New roles in hemicellulosic sugar fermentation for the uncultivated Bacteroidetes family BS11

D. Hoyt, M. Lipton, S. Purvine, 2016, The ISME Journal.

Mechanisms of Manganese(II) Oxidation by Filamentous Ascomycete Fungi Vary With Species and Time as a Function of Secretome Composition

L. Paša-Tolić, S. Purvine, E. Zink, 2021, Frontiers in Microbiology.

Analysis of the Salmonella typhimurium Proteome through Environmental Response toward Infectious Conditions*

Fred Heffron, Joshua N Adkins, Samuel O Purvine, 2006, Molecular & Cellular Proteomics.

Quantitative phosphoproteome analysis of lysophosphatidic acid induced chemotaxis applying dual-step (18)O labeling coupled with immobilized metal-ion affinity chromatography.

Ronald J. Moore, Richard D. Smith, D. Camp, 2008, Journal of proteome research.

Linear discriminant analysis-based estimation of the false discovery rate for phosphopeptide identifications.

Matthew E Monroe, Feng Yang, Xiuxia Du, 2008, Journal of proteome research.

Multiomics resolution of molecular events during a day in the life of Chlamydomonas

A. Weber, M. Lipton, S. Purvine, 2019, Proceedings of the National Academy of Sciences.

Platelet proteome changes associated with diabetes and during platelet storage for transfusion.

C. Francis, L. Paša-Tolić, J. Miller, 2009, Journal of proteome research.

Automated Genome Mining of Ribosomal Peptide Natural Products

Nuno Bandeira, Pavel A. Pevzner, Mingxun Wang, 2014, ACS chemical biology.

Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants

Stephen J. Callister, M. V. van Baren, T. Deerinck, 2016, BMC Genomics.

Challenges in Bioinformatics Workflows for Processing Microbiome Omics Data at Scale

William D. Duncan, C. Mungall, S. Canon, 2022, Frontiers in Bioinformatics.

Structure dependent determination of organophosphate targets in mammalian tissues using activity-based protein profiling.

Hans C. Bernstein, Anil K. Shukla, S. Purvine, 2019, Chemical research in toxicology.

Genome-centric view of carbon processing in thawing permafrost

Changsheng Li, S. Frolking, P. Crill, 2018, Nature.

Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species Cryosericum septentrionale gen. nov. sp. nov.,

S. Saleska, B. Woodcroft, G. Tyson, 2019, Systematic and applied microbiology.

Pumping Iron: A Multi-omics Analysis of Two Extremophilic Algae Reveals Mechanisms of Iron Economy

Jennifer H. Wisecaver, S. Purvine, Crysten E. Blaby-Haas, 2023, bioRxiv.

The study of macromolecular complexes by quantitative proteomics

Ruedi Aebersold, David R. Goodlett, Samuel O. Purvine, 2003, Nature Genetics.

High-throughput sequencing of the chloroplast and mitochondrion of Chlamydomonas reinhardtii to generate improved de novo assemblies, analyze expression patterns and transcript speciation, and evaluate diversity among laboratory strains and wild isolates.

M. Pellegrini, S. Purvine, S. Merchant, 2018, The Plant journal : for cell and molecular biology.

Genome-Resolved Metaproteomics Decodes the Microbial and Viral Contributions to Coupled Carbon and Nitrogen Cycling in River Sediments

Elizabeth K. Eder, D. Hoyt, M. Lipton, 2022, bioRxiv.

Decrypting bacterial polyphenol metabolism in an anoxic wetland soil

D. Hoyt, M. Lipton, S. Purvine, 2021, Nature Communications.

Coupled laboratory and field investigations resolve microbial interactions that underpin persistence in hydraulically fractured shales

Elizabeth K. Eder, D. Hoyt, M. Lipton, 2018, Proceedings of the National Academy of Sciences.

A comprehensive collection of systems biology data characterizing the host response to viral infection

Qibin Zhang, Brian D. Aevermann, Brett E. Pickett, 2014, Scientific Data.

Widespread polycistronic gene expression in green algae

K. Niyogi, J. Grimwood, J. Schmutz, 2021, Proceedings of the National Academy of Sciences.

Improving collision induced dissociation (CID), high energy collision dissociation (HCD), and electron transfer dissociation (ETD) fourier transform MS/MS degradome-peptidome identifications using high accuracy mass information.

Richard D. Smith, S. Purvine, Yufeng Shen, 2012, Journal of proteome research.

Outer membrane vesicles catabolize lignin-derived aromatic compounds in Pseudomonas putida KT2440

Stefan J. Haugen, R. Hettich, S. Purvine, 2020, Proceedings of the National Academy of Sciences.

Major Classification: Biological Sciences Minor Classification: Applied Biological Sciences Outer membrane vesicles catabolize lignin-derived aromatic compounds in Pseudomonas putida KT2440

R. Hettich, S. Purvine, G. Beckham, 2020 .

Quantitative analysis of cell surface membrane proteins using membrane-impermeable chemical probe coupled with 18O labeling.

Ronald J. Moore, Richard D. Smith, M. Monroe, 2010, Journal of proteome research.

Individual Variability of Protein Expression in Human Tissues.

Samuel H. Payne, J. Adkins, S. Purvine, 2018, Journal of proteome research.

Structure Of Eukaryotic Type III Glutamine Synthetase Lacking Ring-Ring Quaternary Contacts

S. Purvine, C. Smallwood, I. Novikova, 2022, bioRxiv.

Proteomic identification and quantification of S-glutathionylation in mouse macrophages using resin-assisted enrichment and isobaric labeling.

Richard D. Smith, D. Camp, T. Clauss, 2014, Free radical biology & medicine.

Cysteine: an ancestral Cu binding ligand in green algae?

M. Lipton, S. Purvine, T. Northen, 2023, bioRxiv.

Comparative Omics-Driven Genome Annotation Refinement: Application across Yersiniae

Joshua N. Adkins, Scott N. Peterson, Charles Ansong, 2012, PloS one.

The influence of sample preparation and replicate analyses on HeLa Cell phosphoproteome coverage.

Richard D. Smith, D. Camp, M. Monroe, 2008, Journal of proteome research.

Proteome insights into the symbiotic relationship between a captive colony of Nasutitermes corniger and its hindgut microbiome

Philip Hugenholtz, Samuel O Purvine, Stephen J. Callister, 2011, The ISME Journal.

A Multi-Omic View of Host-Pathogen-Commensal Interplay in Salmonella-Mediated Intestinal Infection

Young-Mo Kim, Joshua N. Adkins, Scott N. Peterson, 2013, PloS one.

Supplement to: Omic Data from Evolved Strains are Consistent with Computed Optimal Growth States

Tom M. Conrad, Richard D. Smith, B. Palsson, 2010 .

A statistical method for assessing peptide identification confidence in accurate mass and time tag proteomics.

Alan R. Dabney, Richard D. Smith, Richard D. Smith, 2011, Analytical chemistry.

Integrated Omics Analysis of Pathogenic Host Responses during Pandemic H1N1 Influenza Virus Infection: The Crucial Role of Lipid Metabolism.

Young-Mo Kim, Xinxia Peng, Yoshihiro Kawaoka, 2016, Cell host & microbe.

Enrichment and Broad Representation of Plant Biomass-Degrading Enzymes in the Specialized Hyphal Swellings of Leucoagaricus gongylophorus, the Fungal Symbiont of Leaf-Cutter Ants

Ronald J. Moore, Kristin E. Burnum-Johnson, Richard D. Smith, 2015, PloS one.

High Dynamic Range Characterization of the Trauma Patient Plasma Proteome*S

Ronald G. Tompkins, Tao Liu, Marina A. Gritsenko, 2006, Molecular & Cellular Proteomics.

Quantitative proteomic analysis indicates increased synthesis of a quinolone by Pseudomonas aeruginosa isolates from cystic fibrosis airways

Samuel I. Miller, R. Aebersold, J. Eng, 2003, Proceedings of the National Academy of Sciences of the United States of America.

Multi ‘omics comparison reveals metabolome biochemistry, not microbiome composition or gene expression, corresponds to elevated biogeochemical function in the hyporheic zone

James C. Stegen, David W. Kennedy, Carrie D. Nicora, 2018, bioRxiv.

Multi ‘omics comparison reveals metabolome biochemistry, not microbiome composition or gene expression, corresponds to elevated biogeochemical function in the hyporheic zone

W. Nelson, S. Purvine, C. Nicora, 2018, bioRxiv.

MALDI-Mass Spectrometric Imaging Revealing Hypoxia-Driven Lipids and Proteins in a Breast Tumor Model.

Ljiljana Paša-Tolić, Zaver M. Bhujwalla, Kristine Glunde, 2015, Analytical chemistry.

Amino acid treatment enhances protein recovery from sediment and soils for metaproteomic studies

Stephen J. Callister, M. David, J. Jansson, 2013, Proteomics.

Deep-Subsurface Pressure Stimulates Metabolic Plasticity in Shale-Colonizing Halanaerobium spp.

Elizabeth K. Eder, D. Hoyt, M. Lipton, 2019, Applied and Environmental Microbiology.

Single cell carbon and nitrogen incorporation and remineralization profiles are uncoupled from phylogenetic groupings of diatom-associated bacteria

M. Lipton, S. Purvine, C. Nicora, 2022, bioRxiv.

Correction: Comparative Omics-Driven Genome Annotation Refinement: Application across Yersiniae

Joshua N. Adkins, Scott N. Peterson, Charles Ansong, 2012, PLoS ONE.

Pumping iron: A multi-omics analysis of two extremophilic algae reveals iron economy management

Jennifer H. Wisecaver, S. Purvine, Crysten E. Blaby-Haas, 2023, bioRxiv.

Proteome-wide identification of proteins and their modifications with decreased ambiguities and improved false discovery rates using unique sequence tags.

Ronald J Moore, Nikola Tolić, Joshua N Adkins, 2008, Analytical chemistry.

Single-throughput Complementary High-resolution Analytical Techniques for Characterizing Complex Natural Organic Matter Mixtures.

D. Hoyt, S. Purvine, H. Brewer, 2019, Journal of visualized experiments : JoVE.

A parts list for fungal cellulosomes revealed by comparative genomics

Kevin V. Solomon, Sean P. Gilmore, A. Salamov, 2017, Nature Microbiology.

Specialized proteomic responses and an ancient photoprotection mechanism sustain marine green algal growth during phosphate limitation

Stephen J. Callister, Richard D. Smith, S. Purvine, 2018, Nature Microbiology.

High resolution visualization and exo‐proteomics reveal the physiological role of XlnR and AraR in plant biomass colonization and degradation by Aspergillus niger

R. D. de Vries, S. Purvine, S. Baker, 2017, Environmental microbiology.

Automated data extraction from in situ protein-stable isotope probing studies.

Samuel H Payne, Gordon A Anderson, Gordon W. Slysz, 2014, Journal of proteome research.

Integrated post-experiment monoisotopic mass refinement: an integrated approach to accurately assign monoisotopic precursor masses to tandem mass spectrometric data.

Ronald J. Moore, Richard D. Smith, D. Camp, 2010, Analytical chemistry.

Identification of c-type heme-containing peptides using nonactivated immobilized metal affinity chromatography resin enrichment and higher-energy collisional dissociation.

Ronald J. Moore, Richard D. Smith, M. Monroe, 2011, Analytical chemistry.

Optimizing metaproteomics database construction: lessons from a study of the vaginal microbiome

S. Proll, S. Purvine, S. Minot, 2023, mSystems.

Enzymatically hydrolyzed fluorescence-based chemical probe enables in situ mapping of chitinase activity in the rhizosphere

Jamie R. Nuñez, S. Purvine, A. Wright, 2023, Soil Biology and Biochemistry.

Characterization of strategies for obtaining confident identifications in bottom-up proteomics measurements using hybrid FTMS instruments.

Ronald J. Moore, Richard D. Smith, M. Monroe, 2008, Analytical chemistry.

Shotgun collision‐induced dissociation of peptides using a time of flight mass analyzer

D. Goodlett, S. Purvine, J. Eppel, 2003, Proteomics.

Reversible cation response with a protein-modified nanopipette.

Alan R. Dabney, Gordon W. Slysz, Richard D. Smith, 2011, Analytical chemistry.

Differential stable isotope labeling of peptides for quantitation and de novo sequence derivation.

R. Aebersold, E. Kolker, J. Eng, 2001, Rapid communications in mass spectrometry : RCM.

Iron rescues glucose-mediated photosynthesis repression during lipid accumulation in the green alga Chromochloris zofingiensis

K. Niyogi, M. Lipton, S. Purvine, 2023, bioRxiv.

Tertiary structural rearrangements upon oxidation of Methionine145 in calmodulin promotes targeted proteasomal degradation.

Jennifer E. Whittier, S. Purvine, Yijia Xiong, 2006, Biophysical journal.

Plant iTRAQ‐Based Proteomics

K. Hixson, L. Paša-Tolić, S. Purvine, 2017 .