J. Kuehl

发表

Indirect and suboptimal control of gene expression is widespread in bacteria

Kelly M. Wetmore, A. Arkin, A. Deutschbauer, 2013, Molecular systems biology.

Deep Annotation of Protein Function across Diverse Bacteria from Mutant Phenotypes

Kelly M. Wetmore, Jacob S. Lamson, Benjamin E. Rubin, 2016 .

The first complete chloroplast genome sequence of a lycophyte, Huperzia lucidula (Lycopodiaceae).

R. Olmstead, J. Boore, B. Mishler, 2005, Gene.

Identifying the basal angiosperm node in chloroplast genome phylogenies: sampling one's way out of the Felsenstein zone.

Jim Leebens-Mack, Robert K Jansen, Linda A. Raubeson, 2005, Molecular biology and evolution.

Filling gaps in bacterial amino acid biosynthesis pathways with high-throughput genetics

A. Arkin, A. Deutschbauer, M. Price, 2017, bioRxiv.

Interactive XCMS Online: Simplifying Advanced Metabolomic Data Processing and Subsequent Statistical Analyses

Adam P. Arkin, Gary Siuzdak, Harsha Gowda, 2014, Analytical chemistry.

Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns

James Leebens-Mack, Robert K Jansen, Henry Daniell, 2007, Proceedings of the National Academy of Sciences.

Phylogenetic and evolutionary implications of complete chloroplast genome sequences of four early-diverging angiosperms: Buxus (Buxaceae), Chloranthus (Chloranthaceae), Dioscorea (Dioscoreaceae), and Illicium (Schisandraceae).

R. Jansen, J. Boore, J. Kuehl, 2007, Molecular phylogenetics and evolution.

Complete plastid genome sequences of Drimys, Liriodendron, and Piper: implications for the phylogenetic relationships of magnoliids

J. Leebens-Mack, J. Carlson, C. dePamphilis, 2006, BMC Evolutionary Biology.

Selective carbon sources influence the end products of microbial nitrate respiration

A. Arkin, A. Deutschbauer, M. Price, 2019, bioRxiv.

Implications of the Plastid Genome Sequence of Typha (Typhaceae, Poales) for Understanding Genome Evolution in Poaceae

R. Jansen, J. Boore, J. Kuehl, 2010, Journal of Molecular Evolution.

Socotra Island the forgotten fragment of Gondwana: unmasking chameleon lizard history with complete mitochondrial genomic data.

J. Kuehl, T. Papenfuss, N. Ananjeva, 2008, Molecular phylogenetics and evolution.

Variation among Desulfovibrio Species in Electron Transfer Systems Used for Syntrophic Growth

A. Arkin, A. Deutschbauer, D. Stahl, 2012, Journal of bacteriology.

Deletion Mutants, Archived Transposon Library, and Tagged Protein Constructs of the Model Sulfate-Reducing Bacterium Desulfovibrio vulgaris Hildenborough

M. Shatsky, A. Arkin, G. Butland, 2021 .

Deletion Mutants, Archived Transposon Library, and Tagged Protein Constructs of the Model Sulfate-Reducing Bacterium Desulfovibrio vulgaris Hildenborough

M. Shatsky, A. Arkin, G. Butland, 2021, Microbiology Resource Announcements.

Comparative phylogenomic analyses of teleost fish Hox gene clusters: lessons from the cichlid fish Astatotilapia burtoni

Axel Meyer, A. Meyer, J. Boore, 2007, BMC Genomics.

Using partial genomic fosmid libraries for sequencing complete organellar genomes.

J. Leebens-Mack, C. dePamphilis, J. Boore, 2005, BioTechniques.

Extensive Reorganization of the Plastid Genome of Trifolium subterraneum (Fabaceae) Is Associated with Numerous Repeated Sequences and Novel DNA Insertions

R. Jansen, J. Boore, J. Kuehl, 2008, Journal of Molecular Evolution.

Complete chloroplast genome sequences of Drimys, Liriodendron, and Piper: Implications for the phylogeny of magnoliids and the evolution of GC content

J. Leebens-Mack, J. Carlson, C. dePamphilis, 2008 .

Genetic basis for nitrate resistance in Desulfovibrio strains

A. Arkin, A. Deutschbauer, M. Price, 2014, Front. Microbiol..

Lawrence Berkeley National Laboratory Recent Work Title System-wide adaptations of Desulfovibrio alaskensis G 20 to phosphate-limited conditions

A. Arkin, M. Adam, J. Kuehl, 2016 .

Evidence-Based Annotation of Transcripts and Proteins in the Sulfate-Reducing Bacterium Desulfovibrio vulgaris Hildenborough

A. Arkin, A. Deutschbauer, M. Price, 2011, Journal of bacteriology.

Evidence-based annotation of proteins and transcripts in the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenbor- ough

A. Arkin, A. Deutschbauer, M. Price, 2011 .

Large-scale Genetic Characterization of a Model Sulfate-Reducing Bacterium

Kelly M. Wetmore, A. Arkin, G. Butland, 2021, bioRxiv.

A Defined Medium for Cultivation and Exometabolite Profiling of Soil Bacteria

A. Arkin, A. Deutschbauer, J. Kuehl, 2022, Frontiers in Microbiology.

A simple, cost-effective and automation-friendly direct PCR approach for bacterial community analysis

A. Arkin, J. Kuehl, F. Song, 2021, bioRxiv.

Anion transport as a target of adaption to perchlorate in sulfate-reducing communities

J. Kuehl, J. Coates, A. Kazakov, 2019, The ISME Journal.

Flexibility of Syntrophic Enzyme Systems in Desulfovibrio Species Ensures Their Adaptation Capability to Environmental Changes

A. Arkin, A. Deutschbauer, D. Stahl, 2013, Journal of bacteriology.

Towards Environmental Control of Microbiomes

William A. Sharpless, A. Arkin, J. Kuehl, 2022, bioRxiv.

Control of methionine metabolism by the SahR transcriptional regulator in Proteobacteria.

A. Arkin, A. Deutschbauer, M. Price, 2014, Environmental microbiology.

Deep Annotation of Protein Function across Diverse Bacteria from 11 Mutant Phenotypes 12 13

Kelly M. Wetmore, Jacob S. Lamson, Benjamin E. Rubin, 2016 .

Extreme reconfiguration of plastid genomes in the angiosperm family Geraniaceae: rearrangements, repeats, and codon usage.

R. Jansen, J. Boore, J. Kuehl, 2011, Molecular biology and evolution.

The selective pressures on the microbial community in a metal-contaminated aquifer

A. Arkin, A. Deutschbauer, M. Price, 2018, The ISME Journal.

Mutant phenotypes for thousands of bacterial genes of unknown function

Adam P. Arkin, Axel Visel, Romy Chakraborty, 2018, Nature.

Comparative Metagenomics and Population Dynamics of the Gut Microbiota in Mother and Infant

Howard Ochman, Jennifer V. Kuehl, M. Pilar Francino, 2010, Genome biology and evolution.

Bmc Plant Biology

J. Boore, J. Kuehl, M. Causse, 2007 .

Methods for obtaining and analyzing whole chloroplast genome sequences.

James Leebens-Mack, Stacia K Wyman, Andrew J. Alverson, 2005, Methods in enzymology.

Phylogenetic relationships among amphisbaenian reptiles based on complete mitochondrial genomic sequences.

J. Boore, J. Kuehl, T. Papenfuss, 2004, Molecular phylogenetics and evolution.

The Enhancer of split complex arose prior to the diversification of schizophoran flies and is strongly conserved between Drosophila and stalk-eyed flies (Diopsidae)

G. Wilkinson, J. Kuehl, R. Baker, 2011, BMC Evolutionary Biology.

Genome-wide analyses of Geraniaceae plastid DNA reveal unprecedented patterns of increased nucleotide substitutions

R. Jansen, J. Boore, J. Kuehl, 2008, Proceedings of the National Academy of Sciences.

The Gut as Reservoir of Antibiotic Resistance: Microbial Diversity of Tetracycline Resistance in Mother and Infant

J. Kuehl, M. P. Francino, Y. Agersø, 2011, PloS one.

Functional Genomics with a Comprehensive Library of Transposon Mutants for the Sulfate-Reducing Bacterium Desulfovibrio alaskensis G20

Adam P. Arkin, Morgan N. Price, Terry C. Hazen, 2014, mBio.

Naked corals: skeleton loss in Scleractinia.

J. Boore, A. Collins, J. Kuehl, 2006, Proceedings of the National Academy of Sciences of the United States of America.

The genetic basis of energy conservation in the sulfate-reducing bacterium Desulfovibrio alaskensis G20

Adam P. Arkin, Morgan N. Price, Kelly M. Wetmore, 2014, bioRxiv.

Mechanisms of direct inhibition of the respiratory sulfate-reduction pathway by (per)chlorate and nitrate

A. Arkin, A. Deutschbauer, M. Price, 2014, The ISME Journal.

Dissimilatory Sulfate Reduction Under High Pressure by Desulfovibrio alaskensis G20

A. Deutschbauer, J. Kuehl, J. Coates, 2018, Front. Microbiol..

System-Wide Adaptations of Desulfovibrio alaskensis G20 to Phosphate-Limited Conditions

Tanja Bosak, Adam P Arkin, A. Arkin, 2016, PloS one.

Monofluorophosphate is a selective inhibitor of respiratory sulfate-reducing microorganisms.

A. Arkin, A. Deutschbauer, J. Kuehl, 2015, Environmental science & technology.

A comparative analysis of the Lactuca and Helianthus (Asteraceae) plastid genomes: identification of divergent regions and categorization of shared repeats.

R. Jansen, J. Boore, R. Timme, 2007, American journal of botany.

The selective pressures on the microbial community in a metal-contaminated aquifer

A. Arkin, A. Deutschbauer, M. Price, 2018, The ISME Journal.

Complete plastome sequences of Equisetum arvense and Isoetes flaccida: implications for phylogeny and plastid genome evolution of early land plant lineages

Aaron M. Duffy, R. Olmstead, J. Boore, 2010, BMC Evolutionary Biology.

Parallel Loss of Plastid Introns and Their Maturase in the Genus Cuscuta

J. Leebens-Mack, C. dePamphilis, J. Boore, 2009, PloS one.

Functional gene losses occur with minimal size reduction in the plastid genome of the parasitic liverwort Aneura mirabilis.

C. dePamphilis, J. Boore, J. Kuehl, 2008, Molecular biology and evolution.

The complete plastid genome sequence of Welwitschia mirabilis: an unusually compact plastome with accelerated divergence rates

Linda A. Raubeson, J. Boore, J. Kuehl, 2008, BMC Evolutionary Biology.

Large-scale genetic characterization of the model sulfate-reducing bacterium, Desulfovibrio vulgaris Hildenborough

Kelly M. Wetmore, A. Arkin, G. Butland, 2023, Frontiers in Microbiology.

Chloroplast genome sequence of the moss Tortula ruralis: gene content, polymorphism, and structural arrangement relative to other green plant chloroplast genomes

Aaron M. Duffy, J. Boore, B. Mishler, 2010, BMC Genomics.

The Complete Plastid Genome Sequence of Angiopteris evecta (G. Forst.) Hoffm. (Marattiaceae)

J. Boore, J. Kuehl, K. Everett, 2007 .

New thoughts on deep sedimentary sulfur cycling ( the deep " cryptic S cycle " )

N. Baliga, A. Arkin, A. Deutschbauer, 2015 .

The energy-conserving electron transfer system used by Desulfovibrio alaskensis strain G20 during pyruvate fermentation involves reduction of endogenously formed fumarate and cytoplasmic and membrane-bound complexes, Hdr-Flox and Rnf.

Adam P Arkin, Jayashree Ray, Morgan N Price, 2014, Environmental microbiology.

Systematics and plastid genome evolution of the cryptically photosynthetic parasitic plant genus Cuscuta (Convolvulaceae)

C. dePamphilis, J. Boore, J. Kuehl, 2007, BMC Biology.

Anion transport as a target of adaption to perchlorate in sulfate-reducing communities

J. Kuehl, J. Coates, A. Kazakov, 2019, The ISME Journal.

The complete mitochondrial genome of a gecko and the phylogenetic position of the Middle Eastern Teratoscincus keyserlingii.

J. Boore, J. Kuehl, T. Papenfuss, 2005, Molecular phylogenetics and evolution.

Impact of inoculation practices on microbiota assembly and community stability in a fabricated ecosystem

A. Deutschbauer, J. Kuehl, T. Northen, 2023, bioRxiv.

A Simple, Cost-Effective, and Automation-Friendly Direct PCR Approach for Bacterial Community Analysis

A. Arkin, J. Kuehl, Arjun Chandran, 2021, mSystems.

Systematics and plastid genome evolution of the cryptically photosynthetic parasitic plant genus Cuscuta (Convolvulaceae)

C. dePamphilis, J. Boore, J. Kuehl, 2007, BMC Biology.

A Comparison of the First Two Sequenced Chloroplast Genomes in Asteraceae: Lettuce and Sunflower

R. Jansen, J. Boore, R. Timme, 2006 .

Mutant phenotypes for thousands of bacterial genes of unknown function

Kelly M. Wetmore, Jacob S. Lamson, Benjamin E. Rubin, 2018, Nature.

Variation among Desulfovibrio Species in Electron Transfer Systems Used for Syntrophic Growth

A. Arkin, A. Deutschbauer, D. Stahl, 2012, Journal of bacteriology.

Complete plastid genome sequences of Drimys, Liriodendron, and Piper: implications for the phylogenetic relationships of magnoliids

J. Leebens-Mack, J. Carlson, C. dePamphilis, 2006, BMC Evolutionary Biology.

Selective carbon sources influence the end products of microbial nitrate respiration

A. Arkin, A. Deutschbauer, M. Price, 2020, The ISME Journal.

Molecular Systems Biology Peer Review Process File Indirect and Suboptimal Control of Gene Expression Is Widespread in Bacteria Transaction Report

Kelly M. Wetmore, Jeffrey M. Skerker, A. Arkin, 2022 .

Naked Stony Corals: Skeleton Loss in Scleractinia

J. Boore, A. Collins, J. Kuehl, 2005 .

High-throughput protein characterization by complementation using DNA barcoded fragment libraries

A. Deutschbauer, M. Price, J. Kuehl, 2024, bioRxiv.

Complete Genome Sequence of Cupriavidus basilensis 4G11, Isolated from the Oak Ridge Field Research Center Site

Jeffrey M. Skerker, A. Arkin, A. Deutschbauer, 2015, Genome Announcements.

Genomic and environmental controls on Castellaniella biogeography in an anthropogenically disturbed subsurface

K. A. Hunt, A. Deutschbauer, J. Chandonia, 2024, bioRxiv.

A comparative analysis of the Lactuca and Helianthus (Asteraceae) plastid genomes: identification of divergent regions and categorization of shared repeats.

R. Jansen, J. Boore, R. Timme, 2007, American journal of botany.