Y. Muto

发表

Structural insight into RNA recognition motifs: versatile molecular Lego building blocks for biological systems

S. Yokoyama, Y. Muto, 2012, Wiley interdisciplinary reviews. RNA.

RNA-binding proteins: TRAPping RNA bases

C. Oubridge, K. Nagai, Y. Muto, 2000, Current Biology.

Complex structure of the zf-CW domain and the H3K4me3 peptide

T. Kigawa, S. Yokoyama, Y. Muto, 2010 .

Structural insight into the zinc finger CW domain as a histone modification reader.

T. Umehara, P. Güntert, T. Kigawa, 2010, Structure.

Clinicopathological and molecular analysis of SIRT7 in hepatocellular carcinoma.

Y. Muto, M. Kitagawa, S. Ishibashi, 2020, Pathology.

Aberrant Assembly of RNA Recognition Motif 1 Links to Pathogenic Conversion of TAR DNA-binding Protein of 43 kDa (TDP-43)*

T. Kigawa, S. Yokoyama, R. Takahashi, 2013, The Journal of Biological Chemistry.

Solution structure of the zinc finger HIT domain in protein FON

S. Sugano, T. Umehara, T. Kigawa, 2005, Protein science : a publication of the Protein Society.

Solution structure of the GUCT domain from human RNA helicase II/Guβ reveals the RRM fold, but implausible RNA interactions

Peter Güntert, Satoru Watanabe, Naoya Tochio, 2009, Proteins.

Glycolytic flux controls d-serine synthesis through glyceraldehyde-3-phosphate dehydrogenase in astrocytes

Y. Muto, K. Hamase, M. Matsuoka, 2015, Proceedings of the National Academy of Sciences.

Mechanisms of molecular recognition of tRNAs by aminoacyl-tRNA synthetases.

O. Nureki, S. Yokoyama, R. Giegé, 1991, Nucleic acids symposium series.

The secondary structure of the colicin E3 immunity protein as studied by 1H-1H and 1H-15N two-dimensional NMR spectroscopy.

S. Yokoyama, S. Yajima, H. Masaki, 1992, Biochemistry.

Conformational Change of tRNA Upon Interaction of the Identity-Determinant Set with Aminoacyl-tRNA Synthetase

O. Nureki, S. Yokoyama, C. Florentz, 1993 .

Structural basis for the dual RNA-recognition modes of human Tra2-β RRM

Sumio Sugano, Peter Güntert, Satoru Watanabe, 2010, Nucleic acids research.

Structures of the first and second double‐stranded RNA‐binding domains of human TAR RNA‐binding protein

P. Güntert, T. Kigawa, S. Yokoyama, 2011, Protein science : a publication of the Protein Society.

A1H-15N NM R study of human c-Ha-ras protein: Biosynthetic incorporation of15N-labeled amino acids

S. Yokoyama, Y. Muto, S. Nishimura, 1992, Journal of biomolecular NMR.

Conformation change of effector-region residues in antiparallel β-sheet of human c-Ha-ras protein on GDP→GTPγS exchange: A two-dimensional NMR study

S. Yokoyama, Y. Muto, G. Kawai, 1989 .

Structural studies of a novel type of pentaantennary large glycan unit in the fertilization-associated carbohydrate-rich glycopeptide isolated from the fertilized eggs of Oryzias latipes.

K. Khoo, A. Dell, Y. Muto, 1994, The Journal of biological chemistry.

Occurrence and structural analysis of highly sulfated multiantennary N-linked glycan chains derived from a fertilization-associated carbohydrate-rich glycoprotein in unfertilized eggs of Tribolodon hakonensis.

K. Khoo, A. Dell, Y. Muto, 1996, European journal of biochemistry.

Identification and structural determination of the KDN-containing N-linked glycan chains consisting of bi- and triantennary complex-type units of KDN-glycoprotein previously isolated from rainbow trout vitelline envelopes.

Y. Muto, T. Tezuka, K. Kitajima, 1994, Biochemistry.

Structure of novel gangliosides, deaminated neuraminic acid (KDN)-containing glycosphingolipids, isolated from rainbow trout ovarian fluid.

Y. Muto, K. Kitajima, S. Inoue, 1993, Biochemistry.

Solution structure of the YTH domain in YTH domain-containing protein 1 (Putative splicing factor YT521)

T. Kigawa, S. Yokoyama, Y. Muto, 2007 .

Solution structure of the YTH domain in YTH domain-containing protein 2

T. Kigawa, S. Yokoyama, Y. Muto, 2007 .

Structural basis for the interaction between the first SURP domain of the SF3A1 subunit in U2 snRNP and the human splicing factor SF1

Y. Muto, Kanako Kuwasako, N. Nameki, 2022, Protein science : a publication of the Protein Society.

1H, 13C, and 15N resonance assignments and solution structures of the KH domain of human ribosome binding factor A, mtRbfA, involved in mitochondrial ribosome biogenesis

P. Güntert, T. Kigawa, S. Yokoyama, 2022, Biomolecular NMR Assignments.

Solution structure of the splicing factor motif of the human Prp18 protein

P. Güntert, T. Kigawa, S. Yokoyama, 2012, Proteins.

Proton NMR study of the trimannosyl unit in a pentaantennary N-linked decasaccharide structure. Complete assignment of the proton resonances and conformational characterization.

S. Yokoyama, Y. Muto, K. Kitajima, 1995, European journal of biochemistry.

Interactions of a didomain fragment of the Drosophila Sex-lethal protein with single-stranded uridine-rich oligoribonucleotides derived from the transformer and Sex-lethal messenger RNA precursors: NMR with residue-selective [5-2H]uridine substitutions

S. Yokoyama, Y. Muto, Satoru Watanabe, 2000, Journal of biomolecular NMR.

Cell-free synthesis and amino acid-selective stable isotope labeling of proteins for NMR analysis

T. Kigawa, S. Yokoyama, Y. Muto, 1995, Journal of biomolecular NMR.

Selective deuteration of RNA for NMR signal assignment.

S. Yokoyama, Y. Muto, K. Watanabe, 1995, Nucleic acids symposium series.

A site-directed mutagenesis study on the role of isoleucine-23 of human epidermal growth factor in the receptor binding.

S. Takahashi, Y. Muto, T. Oka, 1992, Biochimica et Biophysica Acta.

Controlling the Fluorescence of Benzofuran‐Modified Uracil Residues in Oligonucleotides by Triple‐Helix Formation

M. Sekine, Y. Muto, M. Shirouzu, 2015, ChemBioChem.

Receptor-binding affinities of human epidermal growth factor variants having unnatural amino acid residues in position 23.

T. Kigawa, S. Yokoyama, S. Takahashi, 1994, Biochemistry.

NMR analysis of the hydrogen bonding interactions of the RNA-binding domains of the Drosophila sex-lethal protein with target RNA fragments with site-specific [3-15N]uridine substitutions.

S. Yokoyama, Y. Muto, Y. Shimura, 1997, Nucleic acids research.

A precise structural analysis of a fertilization-associated carbohydrate-rich glycopeptide isolated from the fertilized eggs of euryhaline killi fish (Fundulus heteroclitus). Novel penta-antennary N-glycan chains with a bisecting N-acetylglucosaminyl residue.

K. Khoo, R. Wallace, A. Dell, 1995, Glycobiology.

Proton NMR study of triantennary complex type N-linked glycan chains: assignment of proton chemical shifts of the β-Man residue in a basic unit of the triantennary glycan chain having a GlcNAcβ1→6Manα1→6Manβ→sequence

S. Yokoyama, Y. Muto, K. Kitajima, 1997 .

Proton NMR study of triantennary complex type AMinked glycan chains: assignment of proton chemical shifts of the p-Man residue in a basic unit of the triantennary glycan chain having a GlcNAcfji—>6Manal^6Manp—> sequence

S. Yokoyama, Y. Muto, K. Kitajima, 2005 .

Complete assignments of 13C NMR resonances to all the carbon atoms of the trimannosido-di-N-acetylchitobiosyl structure in a pentaantennary decasaccharide glycopeptide.

S. Yokoyama, Y. Muto, K. Kitajima, 1995, Carbohydrate research.

Crystal structure of archaeal tRNA(m1G37)methyltransferase aTrm5

Y. Bessho, S. Yokoyama, Y. Muto, 2008, Proteins.

Conformation of ligands bound to the muscarinic acetylcholine receptor.

Shigeyuki Yokoyama, Kazuo Nagasawa, Hiroshi Hirota, 2002, Molecular pharmacology.

NMR studies of the effects of the 5'-phosphate group on conformational properties of 5-methylaminomethyluridine found in the first position of the anticodon of Escherichia coli tRNA(Arg)4.

M. Sekine, S. Yokoyama, K. Sakamoto, 1996, Biochemistry.

RBFOX and SUP-12 sandwich a G base to cooperatively regulate tissue-specific splicing

P. Güntert, M. Hagiwara, S. Yokoyama, 2014, Nature Structural &Molecular Biology.

Complex assembly mechanism and an RNA‐binding mode of the human p14‐SF3b155 spliceosomal protein complex identified by NMR solution structure and functional analyses

B. Séraphin, P. Güntert, S. Yokoyama, 2007, Proteins: Structure, Function, and Bioinformatics.

Solution structures of the SURP domains and the subunit-assembly mechanism within the splicing factor SF3a complex in 17S U2 snRNP.

S. Sugano, P. Güntert, S. Yokoyama, 2006, Structure.

The structure and biochemical properties of the human spliceosomal protein U1C.

David Neuhaus, Chris Oubridge, Yutaka Muto, 2004, Journal of molecular biology.

Solution structure of the first RNA recognition motif domain of human spliceosomal protein SF3b49 and its mode of interaction with a SF3b145 fragment

P. Güntert, T. Kigawa, S. Yokoyama, 2016, Protein science : a publication of the Protein Society.

The RRM domain of poly(A)-specific ribonuclease has a noncanonical binding site for mRNA cap analog recognition

Y. Hayashizaki, P. Güntert, T. Kigawa, 2008, Nucleic acids research.

Regional polysterism in the GTP-bound form of the human c-Ha-Ras protein.

E D Laue, S. Yokoyama, E. Laue, 1997, Biochemistry.

Proton nuclear magnetic resonance study of the third component of complement: solution conformation of the carboxyl-terminal segment of C3a fragment.

Y. Muto, Y. Arata, Y. Fukumoto, 1985, Biochemistry.

Solution structure of the second RNA recognition motif (RRM) domain of murine T cell intracellular antigen-1 (TIA-1) and its RNA recognition mode.

Y. Hayashizaki, P. Güntert, T. Kigawa, 2008, Biochemistry.

Structural insight into the interaction of ADP‐ribose with the PARP WWE domains

P. Güntert, T. Kigawa, S. Yokoyama, 2012, FEBS letters.

A novel 3′ splice site recognition by the two zinc fingers in the U2AF small subunit

E. Obayashi, H. Yoshida, Sam-Yong Park, 2015, Genes & development.

Structural basis for the sequence-specific RNA-recognition mechanism of human CUG-BP1 RRM3

S. Sugano, P. Güntert, T. Kigawa, 2009, Nucleic acids research.

Structural basis for recognition of the tra mRNA precursor by the Sex-lethal protein

Kazuki Kurimoto, Shigeyuki Yokoyama, Osamu Nureki, 1999, Nature.

Structure, Dynamics, and Interaction of p54(nrb)/NonO RRM1 with 5' Splice Site RNA Sequence.

S. Yokoyama, Y. Muto, S. Gagné, 2016, Biochemistry.

1H, 13C and 15N resonance assignments and solution structures of the two RRM domains of Matrin-3

P. Güntert, T. Kigawa, S. Yokoyama, 2021, Biomolecular NMR Assignments.

Chemical shift perturbation studies of the interactions of the second RNA-binding domain of the Drosophila sex-lethal protein with the transformer pre-mRNA polyuridine tract and 3' splice-site sequences.

S. Yokoyama, Y. Muto, Y. Shimura, 1999, European journal of biochemistry.

Characterization of a heat-stable enzyme possessing GTP-dependent RNA ligase activity from a hyperthermophilic archaeon, Pyrococcus furiosus.

M. Tomita, S. Yokoyama, A. Kanai, 2009, RNA.

Isoforms of U1-70k Control Subunit Dynamics in the Human Spliceosomal U1 snRNP

C. Robinson, E. Makarov, Y. Muto, 2009, PloS one.

Solution structures of the first and second RNA‐binding domains of human U2 small nuclear ribonucleoprotein particle auxiliary factor (U2AF65)

Shigeyuki Yokoyama, Yutaka Muto, S. Yokoyama, 1999, The EMBO journal.

A characteristic arrangement of aromatic amino acid residues in the solution structure of the amino-terminal RNA-binding domain of Drosophila sex-lethal.

T. Kigawa, S. Yokoyama, Y. Muto, 1997, Journal of molecular biology.

Structural and functional characterization of the NHR1 domain of the Drosophila neuralized E3 ligase in the notch signaling pathway.

O. Ohara, P. Güntert, T. Kigawa, 2009, Journal of molecular biology.

Site-directed mutagenesis, fluorescence, and two-dimensional NMR studies on microenvironments of effector region aromatic residues of human c-Ha-Ras protein.

S. Yokoyama, Y. Muto, M. Shirouzu, 1994, Biochemistry.

Elucidation of the aberrant 3′ splice site selection by cancer-associated mutations on the U2AF1

E. Obayashi, H. Yoshida, Sam-Yong Park, 2020, Nature Communications.

The zinc-binding region (ZBR) fragment of Emi2 can inhibit APC/C by targeting its association with the coactivator Cdc20 and UBE2C-mediated ubiquitylation

S. Yokoyama, Y. Muto, T. Terada, 2014, FEBS open bio.

Solution structure of the cysteine‐rich domain in Fn14, a member of the tumor necrosis factor receptor superfamily

P. Güntert, T. Kigawa, S. Yokoyama, 2009, Protein science : a publication of the Protein Society.

A 15N-1H nuclear magnetic resonance study on the interaction between isoleucine tRNA and isoleucyl-tRNA synthetase from Escherichia coli.

S. Yokoyama, Y. Muto, K. Watanabe, 1993, Biochimie.

An RNA fragment consisting of the P7 and P9.0 stems and the 3'-terminal guanosine of the Tetrahymena group I intron.

S. Yokoyama, Y. Muto, K. Watanabe, 1996, Nucleic acids research.

Solution structure of an RNA fragment with the P7/P9.0 region and the 3'-terminal guanosine of the tetrahymena group I intron.

Gota Kawai, Satoru Watanabe, Shigeyuki Yokoyama, 2002, RNA.

AU‐rich RNA‐binding induces changes in the quaternary structure of AUH

C. Robinson, S. Yokoyama, Y. Muto, 2009, Proteins.

Crystal structure of human AUH protein, a single-stranded RNA binding homolog of enoyl-CoA hydratase.

O. Nureki, S. Yokoyama, Y. Muto, 2001, Structure.

Guanine-nucleotide binding activity, interaction with GTPase-activating protein and solution conformation of the human c-Ha-Ras protein catalytic domain are retained upon deletion of C-terminal 18 amino acid residues

S. Yokoyama, Y. Muto, K. Yamasaki, 1992, Journal of protein chemistry.

Structure and Assembly of the Spliceosomal snRNPs

Yutaka Muto, K. Nagai, T. Ignjatovic, 2001 .

Novel RNA recognition motif domain in the cytoplasmic polyadenylation element binding protein 3

P. Güntert, T. Kigawa, S. Yokoyama, 2014, Proteins.

1H, 13C, and 15N resonance assignments of the dsRBDs of mouse RNA helicase A

P. Güntert, S. Yokoyama, Y. Muto, 2013, Biomolecular NMR assignments.

Solution structures of the double‐stranded RNA‐binding domains from rna helicase A

P. Güntert, T. Kigawa, S. Yokoyama, 2012, Proteins.

Structure and assembly of the spliceosomal snRNPs. Novartis Medal Lecture.

D. P. Pomeranz Krummel, K. Nagai, T. Ignjatovic, 2001, Biochemical Society transactions.

Structural insights into the dual-targeting mechanism of Nutlin-3.

Y. Muto, S. Chi, Sung Goo Park, 2012, Biochemical and biophysical research communications.

A COMPARATIVE MOLECULAR STRUCTURAL STUDY OF THE THIRD COMPONENT OF COMPLEMENT AND ALPHA-2-MACROGLOBULIN: STRUCTURES OF THE PEPTIDE SEGMENTS THAT ARE SUSCEPTIBLE TO THE ATTACK BY ENDOPROTEINASES

A. Ikai, Y. Muto, Y. Arata, 1987 .

Dual-site Interactions of p53 Protein Transactivation Domain with Anti-apoptotic Bcl-2 Family Proteins Reveal a Highly Convergent Mechanism of Divergent p53 Pathways*

Y. Muto, S. Chi, M. Yoon, 2013, The Journal of Biological Chemistry.

Conformation change of effector-region residues in antiparallel beta-sheet of human c-Ha-ras protein on GDP----GTP gamma S exchange: a two-dimensional NMR study.

S. Yokoyama, Y. Muto, G. Kawai, 1989, Biochemical and biophysical research communications.

Recognition of an antiparallel β‐sheet structure of human epidermal growth factor by its receptor Site‐directed mutagenesis studies of Ala‐30 and Asn‐32

S. Yokoyama, Y. Muto, H. Koide, 1992, FEBS letters.

1H, 13C and 15N resonance assignment of the YTH domain of YTHDC2

P. Güntert, T. Kigawa, S. Yokoyama, 2020, Biomolecular NMR Assignments.

Crystal structure of the N-terminal RecA-like domain of a DEAD-box RNA helicase, the Dugesia japonica vasa-like gene B protein.

T. Kigawa, S. Yokoyama, Y. Muto, 2005, Journal of structural biology.

Structure and assembly of the spliceosomal snRNPs. Novartis Medal Lecture.

K. Nagai, T. Ignjatovic, A. Kuglstatter, 2001, Biochemical Society transactions.

Solution structure of the RNA binding domain in the human muscleblind‐like protein 2

P. Güntert, T. Kigawa, S. Yokoyama, 2009, Protein science : a publication of the Protein Society.

Dual-site Interactions of p53 Protein Transactivation Domain with Anti-apoptotic Bcl-2 Family Proteins Reveal a Highly Convergent Mechanism of Divergent p53 Pathways*

Y. Muto, S. Chi, M. Yoon, 2013, Journal of Biological Chemistry.

1H, 13C, and 15N resonance assignments and solution structure of the N-terminal divergent calponin homology (NN-CH) domain of human intraflagellar transport protein 54.

T. Kigawa, Y. Muto, M. Shirouzu, 2024, Biomolecular NMR assignments.

Solution structure of the RNA binding domain of TAR DNA-binding protein-43

T. Kigawa, S. Yokoyama, Y. Muto, 2005 .

Solution structure of RRM domain in TAR DNA-binding protein-43

T. Kigawa, S. Yokoyama, Y. Muto, 2004 .

Proton nuclear magnetic resonance study of human plasma alpha-2-macroglobulin.

A. Ikai, Y. Muto, Y. Arata, 1986, Biochemistry.