D. Coil

发表

The contributions of normal variation and genetic background to mammalian gene expression

P. Nelson, L. Hsu, C. Pritchard, 2006, Genome Biology.

Network analysis to evaluate the impact of research funding on research community consolidation

J. Eisen, D. Coil, D. Hicks, 2019, bioRxiv.

Bacterial communities associated with cell phones and shoes

J. Gilbert, J. Eisen, Jarrad T. Hampton-Marcell, 2019, PeerJ.

Bacteria isolated from bengal cat (Felis catus × Prionailurus bengalensis) anal sac secretions produce volatile compounds associated with animal signaling

J. Eisen, D. Coil, G. Jospin, 2019, bioRxiv.

Bacteria isolated from Bengal cat (Felis catus × Prionailurus bengalensis) anal sac secretions produce volatile compounds potentially associated with animal signaling

J. Eisen, D. Coil, G. Jospin, 2019, PloS one.

The role of fimV and the importance of its tandem repeat copy number in twitching motility, pigment production, and morphology in Legionella pneumophila

D. Coil, J. Anné, 2010, Archives of Microbiology.

2019 Novel Coronavirus (COVID-19) Pandemic: Built Environment Considerations To Reduce Transmission

J. Eisen, D. Coil, M. Fretz, 2020, mSystems.

Draft Genome Sequence of an Actinobacterium, Brachybacterium muris Strain UCD-AY4

J. Eisen, A. Darling, D. Coil, 2013, Genome Announcements.

Gut Check: The evolution of an educational board game

J. Eisen, D. Coil, C. Ettinger, 2017, PLoS biology.

Growth of 48 built environment bacterial isolates on board the International Space Station (ISS)

Mark Severance, Darlene Cavalier, David A Coil, 2016, PeerJ.

The challenge of SARS-CoV-2 environmental monitoring in schools using floors and portable HEPA filtration units: Fresh or relic RNA?

J. Eisen, D. Coil, R. Zuniga-Montanez, 2021, medRxiv.

The challenge of SARS-CoV-2 environmental monitoring in schools using floors and portable HEPA filtration units: Fresh or relic RNA?

J. Eisen, D. Coil, R. Zuniga-Montanez, 2021, medRxiv.

Isolation and sequence-based characterization of a koala symbiont: Lonepinella koalarum

J. Eisen, D. Coil, G. Jospin, 2020, PeerJ.

Draft Genome Sequence of Curtobacterium sp. Strain UCD-KPL2560 (Phylum Actinobacteria)

J. Eisen, K. P. Lemon, D. Coil, 2016, Genome Announcements.

Draft Genome Sequences of Two Pseudoalteromonas porphyrae Strains Isolated from Seagrass Sediment

J. Eisen, D. Coil, J. Lang, 2016, Genome Announcements.

Draft Genome Sequences of Two Vibrio splendidus Strains, Isolated from Seagrass Sediment

J. Eisen, D. Coil, J. Lang, 2016, Genome Announcements.

Draft Genome Sequence of Bacillus vietnamensis Strain UCD-SED5 (Phylum Firmicutes)

J. Eisen, D. Coil, J. Lang, 2015, Genome Announcements.

Draft Genome Sequence of Bacillus vietnamensis Strain UCD-SED 5 ( Phylum Firmicutes )

J. Eisen, D. Coil, J. Lang, 2015 .

Viral Load Among Vaccinated and Unvaccinated, Asymptomatic and Symptomatic Persons Infected With the SARS-CoV-2 Delta Variant

J. Derisi, D. Havlir, D. Coil, 2022, Open forum infectious diseases.

Microbial Community Succession and Nutrient Cycling Responses following Perturbations of Experimental Saltwater Aquaria

Holly M. Bik, J. Eisen, H. Bik, 2019, mSphere.

Complete Genome Sequence of Coprothermobacter proteolyticus DSM 5265

F. Robb, J. Badger, J. Eisen, 2014, Genome Announcements.

Comparison of Whole-Genome Sequences of Legionella pneumophila in Tap Water and in Clinical Strains, Flint, Michigan, USA, 2016

J. Eisen, Liqing Zhang, E. Garner, 2019, Emerging infectious diseases.

Draft Genome Sequences of Pseudomonas moraviensis UCD-KL30, Vibrio ostreicida UCD-KL16, Colwellia sp. Strain UCD-KL20, Shewanella sp. Strain UCD-KL12, and Shewanella sp. Strain UCD-KL21, Isolated from Seagrass

J. Eisen, D. Coil, Karley M. Lujan, 2017, Genome Announcements.

Draft Genome Sequences of Two Pseudoalteromonas Strains Isolated from Roots and Leaf Blades of the Seagrass Zostera marina

J. Eisen, D. Coil, J. Lang, 2016, Genome Announcements.

Draft Genome Sequence of Cobetia sp. UCD-24C, Isolated from Roots and Leaves of the Seagrass Zostera marina

J. Eisen, D. Coil, J. Lang, 2016, Genome Announcements.

Draft Genome Sequence of Bacillus safensis JPL-MERTA-8-2, Isolated from a Mars-Bound Spacecraft

J. Eisen, D. Coil, J. Benardini, 2015, Genome Announcements.

Draft Genome Sequence of Porphyrobacter mercurialis (sp. nov.) Strain Coronado

J. Eisen, D. Coil, 2015, Genome Announcements.

Draft Genome Sequence of Planomicrobium glaciei UCD-HAM (Phylum Firmicutes)

J. Eisen, D. Coil, G. Jospin, 2015, Genome Announcements.

Draft Genome Sequence of Pseudoalteromonas tetraodonis Strain UCD-SED8 (Phylum Gammaproteobacteria)

J. Eisen, D. Coil, J. Lang, 2015, Genome Announcements.

Draft Genome Sequence of Planomicrobium glaciei UCD-HAM (Phylum Firmicutes ) crossmark

J. Eisen, D. Coil, G. Jospin, 2015 .

Draft Genome Sequence of the Endosymbiont “Candidatus Ruthia magnifica” UCD-CM (Phylum Proteobacteria)

J. Eisen, D. Coil, G. Jospin, 2014, Genome Announcements.

Draft Genome Sequence of Tatumella sp. Strain UCD-D_suzukii (Phylum Proteobacteria) Isolated from Drosophila suzukii Larvae

J. Eisen, D. Coil, G. Jospin, 2014, Genome Announcements.

Draft Genome Sequence of the Pyridinediol-Fermenting Bacterium Synergistes jonesii 78-1

F. Robb, J. Badger, J. Eisen, 2014, Genome Announcements.

2019 Novel Coronavirus (COVID-19) Pandemic: Built Environment Considerations To Reduce Transmission

J. Eisen, D. Coil, M. Fretz, 2020, mSystems.

Air versus Water Chilling of Chicken: a Pilot Study of Quality, Shelf-Life, Microbial Ecology, and Economics

Jason C. Quinn, J. Metcalf, J. Eisen, 2020, mSystems.

Draft Genome Sequences of Streptococcus pyogenes Strains Associated with Throat and Skin Infections in Lebanon

J. Eisen, D. Coil, G. Jospin, 2014, Genome Announcements.

Draft Genome Sequence of the Arsenate-Respiring Bacterium Chrysiogenes arsenatis Strain DSM 11915

F. Robb, J. Eisen, N. Ward, 2013, Genome Announcements.

SARS-CoV-2 RNA Is Readily Detectable at Least 8 Months after Shedding in an Isolation Facility

J. Eisen, D. Coil, R. Zuniga-Montanez, 2022, mSphere.

SARS-CoV-2 detection and genomic sequencing from hospital surface samples collected at UC Davis

Samuel L. Díaz-Muñoz, J. Eisen, D. Coil, 2021, medRxiv.

Draft Genome Sequence of Klebsiella pneumoniae UCD-JA29 Isolated from a Patient with Sepsis

Jason Y. Adams, J. Eisen, D. Coil, 2016, Genome Announcements.

Draft Genome Sequences of Acinetobacter baumannii Strains Harboring the blaNDM-1 Gene Isolated in Lebanon from Civilians Wounded during the Syrian Civil War

J. Eisen, D. Coil, G. Jospin, 2016, Genome Announcements.

Draft Genome Sequence of Klebsiella pneumoniae KGM-IMP216 Harboring blaCTX-M-15, blaDHA-1, blaTEM-1B, blaNDM-1, blaSHV-28, and blaOXA-1, Isolated from a Patient in Lebanon

J. Eisen, D. Coil, G. Jospin, 2016, Genome Announcements.

Additional Draft Genome Sequences of Escherichia coli Strains Isolated from Septic Patients

Jason Y. Adams, J. Eisen, D. Coil, 2016, Genome Announcements.

Draft Genome Sequences of Escherichia coli Strains Isolated from Septic Patients

Jason Y. Adams, J. Eisen, D. Coil, 2014, Genome Announcements.

Draft Genome Sequence of Extended-Spectrum β-Lactamase-Producing Klebsiella pneumoniae Isolated from a Patient in Lebanon

J. Eisen, D. Coil, G. Jospin, 2014, Genome Announcements.

Draft Genome Sequences of Extended-Spectrum β-Lactamase-Producing Escherichia coli Strains Isolated from Patients in Lebanon

J. Eisen, D. Coil, G. Jospin, 2014, Genome Announcements.

Draft Genome Sequence of Kocuria sp. Strain UCD-OTCP (Phylum Actinobacteria)

J. Eisen, A. Darling, D. Coil, 2013, Genome Announcements.

Draft Genome Sequence of Microbacterium sp. Strain UCD-TDU (Phylum Actinobacteria)

J. Eisen, A. Darling, D. Coil, 2013, Genome Announcements.

Reply to McDonald, “Protections against the Risk of Airborne SARS-CoV-2 Infection”

J. Eisen, D. Coil, M. Fretz, 2020, mSystems.

Jaagsiekte Sheep Retrovirus Env Protein Stabilizes Retrovirus Vectors against Inactivation by Lung Surfactant, Centrifugation, and Freeze-Thaw Cycling

D. Coil, A. Miller, J. Strickler, 2001, Journal of Virology.

No Significant Difference in Viral Load Between Vaccinated and Unvaccinated, Asymptomatic and Symptomatic Groups Infected with SARS-CoV-2 Delta Variant

J. Derisi, R. Michelmore, D. Havlir, 2021, medRxiv.

A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data

Aaron E. Darling, Guillaume Jospin, David Coil, 2014, Bioinform..

Draft Genome Sequences of Dermacoccus nishinomiyaensis Strains UCD-KPL2534 and UCD-KPL2528 Isolated from an Indoor Track Facility

J. Eisen, K. P. Lemon, D. Coil, 2017, Genome Announcements.

Prospecting Microbial Strains for Bioremediation and Probiotics Development for Metaorganism Research and Preservation.

J. Eisen, D. Coil, Caren L. S. Vilela, 2019, Journal of visualized experiments : JoVE.

Enhancement of Enveloped Virus Entry by Phosphatidylserine

D. Coil, A. Miller, 2005, Journal of Virology.

Schrödinger’s microbes: Tools for distinguishing the living from the dead in microbial ecosystems

Erica M. Hartmann, C. Huttenhower, D. Coil, 2017, Microbiome.

Comparative sequencing of a multicopy subtelomeric region containing olfactory receptor genes reveals multiple interactions between non-homologous chromosomes.

B. Trask, G. van den Engh, H. Mefford, 2001, Human molecular genetics.

Genome Analysis of Streptococcus pyogenes Associated with Pharyngitis and Skin Infections

G. Khazen, J. Eisen, D. Coil, 2016, PloS one.

Phosphatidylserine Is Not the Cell Surface Receptor for Vesicular Stomatitis Virus

D. Coil, A. Miller, 2004, Journal of Virology.

Phosphatidylserine treatment relieves the block to retrovirus infection of cells expressing glycosylated virus receptors

D. Coil, A. Miller, 2005, Retrovirology.

A global metagenomic map of urban microbiomes and antimicrobial resistance

Stephanie L. Hyland, Nora C. Toussaint, Paweł P. Łabaj, 2021, Cell.

Porphyrobacter mercurialis sp. nov., isolated from a stadium seat and emended description of the genus Porphyrobacter

J. Eisen, D. Coil, Jenna M Lang, 2015, PeerJ.

Inoculation With Desulfovibrio sp. Does Not Enhance Chalk Formation in the Pacific Oyster

D. Coil, Roxanne Banker, 2020, Frontiers in Marine Science.

Draft Genome Analysis of Christensenella minuta DSM 22607, exhibiting an unusual expansion of transporter homologs of unknown function

J. Eisen, D. Coil, G. Jospin, 2020, Journal of genomics.

Genomes from bacteria associated with the canine oral cavity: A test case for automated genome-based taxonomic assignment

J. Eisen, A. Darling, D. Coil, 2019, bioRxiv.

Host-associated microbiomes drive structure and function of marine ecosystems

Elizabeth G. Wilbanks, J. Eisen, R. V. Thurber, 2019, PLoS biology.

Reconstruction of Metagenome-Assembled Genomes from Aquaria

J. Eisen, D. Coil, G. Jospin, 2021, bioRxiv.

Complete Genome Sequence of the Extreme Thermophile Dictyoglomus thermophilum H-6-12

F. Robb, J. Badger, J. Eisen, 2014, Genome Announcements.

Whole genome sequencing of extended-spectrum β-lactamase producing Klebsiella pneumoniae isolated from a patient in Lebanon

J. Eisen, D. Coil, G. Jospin, 2015, Front. Cell. Infect. Microbiol..

Title Whole genome sequencing of extended-spectrum β-lactamase producing Klebsiella pneumoniae isolated from a patient in Lebanon Permalink

J. Eisen, D. Coil, G. Jospin, 2015 .

Genomic attributes of extended-spectrum β-lactamase-producing Escherichia coli isolated from patients in Lebanon.

J. Eisen, D. Coil, G. Jospin, 2017, Future microbiology.

Host-associated microbiomes and their roles in marine ecosystem functions

Elizabeth G. Wilbanks, J. Eisen, W. Wcislo, 2019 .

2019 Novel Coronavirus (COVID-19) Outbreak: A Review of the Current Literature and Built Environment (BE) Considerations to Reduce Transmission

David A. Coil, Jonathan A. Eisen, Kevin Van Den Wymelenberg, 2020 .

A microbial survey of the International Space Station (ISS)

Russell Y. Neches, David A. Coil, Mark Severance, 2017, PeerJ.

Swabs to genomes: a comprehensive workflow

David A. Coil, Jenna M. Lang, Jonathan A. Eisen, 2015, PeerJ.

Correction for Dietz et al., “2019 Novel Coronavirus (COVID-19) Pandemic: Built Environment Considerations To Reduce Transmission”

Kevin Van Den Wymelenberg, Leslie Dietz, Patrick F Horve, 2020, mSystems.

Draft Genome Sequences of 26 Porphyromonas Strains Isolated from the Canine Oral Microbiome

J. Eisen, A. Darling, D. Coil, 2015, Genome Announcements.

A Legionella pneumophila collagen-like protein encoded by a gene with a variable number of tandem repeats is involved in the adherence and invasion of host cells.

D. Coil, J. Anné, Veerle Saels, 2010, FEMS microbiology letters.

Intragenic tandem repeat variation between Legionella pneumophila strains

D. Coil, J. Anné, E. Lammertyn, 2008, BMC Microbiology.

ALegionella pneumophila collagen-likeprotein encodedbyagene withavariablenumberoftandem repeats is involved in the adherenceand invasionof host cells

D. Coil, J. Anné, Veerle Saels, 2010 .

Draft Genome Sequence of Gordonia sp. Strain UCD-TK1 (Phylum Actinobacteria)

J. Eisen, D. Coil, Tynisha Koenigsaecker, 2016, Genome Announcements.

Characterization of the microbiome and volatile compounds in anal gland secretions from domestic cats (Felis catus) using metagenomics and metabolomics

J. Eisen, D. Coil, M. McCartney, 2023, Research square.

Draft Genome Sequence of Curtobacterium flaccumfaciens Strain UCD-AKU (Phylum Actinobacteria)

J. Eisen, A. Darling, D. Coil, 2013, Genome Announcements.

Twitching motility in Legionella pneumophila.

D. Coil, J. Anné, 2009, FEMS microbiology letters.

Draft Genome Sequence of Propionibacterium avidum Strain UCD-PD2 Isolated from a Feline Anal Sac

J. Eisen, D. Coil, Holly H. Ganz, 2017, Genome Announcements.

Twitchingmotility in Legionella pneumophila

D. Coil, J. Anné, 2009 .

Caecal microbiota in horses with trigeminal‐mediated headshaking

J. Eisen, D. Coil, G. Jospin, 2021, Veterinary medicine and science.

Whole genome sequence analysis reveals the broad distribution of the RtxA type 1 secretion system and four novel putative type 1 secretion systems throughout the Legionella genus

J. Eisen, E. Garner, A. Pruden, 2020, PloS one.

Whole genome sequence analysis reveals broad distribution of the RtxA type 1 secretion system and four novel type 1 secretion systems throughout the Legionella genus

J. Eisen, E. Garner, A. Pruden, 2019, bioRxiv.

Draft Genome Sequence of Tenacibaculum soleae UCD-KL19

J. Eisen, D. Coil, Karley M. Lujan, 2016, Genome Announcements.

Draft Genome Sequences of Acinetobacter baumannii Strains Harboring the blaNDM-1 Gene Isolated in Lebanon from Civilians Wounded during the Syrian Civil War

J. Eisen, D. Coil, G. Jospin, 2016, Genome Announcements.

Draft Genome Sequences of Spacecraft-Associated Microbes Isolated from Six NASA Missions

J. Eisen, D. Coil, Lisa Guan, 2023, Microbiology resource announcements.

Draft Genome Sequence of Rhizobium rhizogenes Strain ATCC 15834

D. Coil, S. Brady, Kaisa Kajala, 2014, Genome Announcements.

Planetary Protection Knowledge Gap Closure Enabling Crewed Missions to Mars.

D. Coil, C. Stoker, S. Castro-Wallace, 2024, Astrobiology.

microBEnet: Lessons Learned from Building an Interdisciplinary Scientific Community in the Online Sphere

J. Eisen, H. Bik, D. Coil, 2014, PLoS biology.