S. Ramachandran

发表

Assessing natural variations in gene expression in humans by comparing with monozygotic twins using microarrays.

Vineet K. Sharma, D. Lancet, S. Brahmachari, 2005, Physiological genomics.

Modeling the post-translational modifications and its effects in the NF-κB pathway

S. Ramachandran, A. Mobeen, 2020, bioRxiv.

Expansion Mechanisms and Functional Annotations of Hypothetical Genes in the Rice Genome[W]

A. Christoffels, S. Ramachandran, Shuye Jiang, 2009, Plant Physiology.

Integrated gene co-expression network analysis in the growth phase of Mycobacterium tuberculosis reveals new potential drug targets.

S. Ramachandran, S. Verma, B. L. Puniya, 2013, Molecular bioSystems.

Screening of Antitubercular Compound Library Identifies Inhibitors of Mur Enzymes in Mycobacterium tuberculosis

S. Ramachandran, Kandasamy Eniyan, J. Rani, 2020, SLAS discovery : advancing life sciences R & D.

Repurposing of FDA-approved drugs to target MurB and MurE enzymes in Mycobacterium tuberculosis

S. Ramachandran, J. Rani, U. Bajpai, 2020, Journal of biomolecular structure & dynamics.

Genome-wide expansion and expression divergence of the basic leucine zipper transcription factors in higher plants with an emphasis on sorghum.

S. Ramachandran, Shuye Jiang, Jizhou Wang, 2011, Journal of integrative plant biology.

Genome-wide patterns of genetic variation in sweet and grain sorghum (Sorghum bicolor)

S. Ramachandran, Shuye Jiang, Chun-Ming Liu, 2011, Genome Biology.

Transposons as tools for functional genomics

S. Ramachandran, V. Sundaresan, 2001 .

Rice Mutant Resources for Gene Discovery

H. Leung, Chang-deok Han, Qifa Zhang, 2004, Plant Molecular Biology.

Transcription factors in plant growth and development.

S. Ramachandran, N. Chua, K. Hiratsuka, 1994, Current opinion in genetics & development.

Computer-aided biotechnology: from immuno-informatics to reverse vaccinology.

Srinivasan Ramachandran, Francesco Filippini, Darren R Flower, 2008, Trends in biotechnology.

Screening Currency Notes for Microbial Pathogens and Antibiotic Resistance Genes Using a Shotgun Metagenomic Approach

V. Scaria, Saakshi Jalali, S. Sivasubbu, 2015, PloS one.

A Software for Prediction of Adhesins and Adhesin-like proteins using Neural networks

Srinivasan Ramachandran, Preti Jain, Kaushal Kumar, 2004 .

FungalRV: adhesin prediction and immunoinformatics portal for human fungal pathogens

Srinivasan Ramachandran, Rupanjali Chaudhuri, S. Ramachandran, 2011, BMC Genomics.

MAAP: Malarial adhesins and adhesin‐like proteins predictor

Srinivasan Ramachandran, S. Ramachandran, F. Ansari, 2008, Proteins.

Mutant Resources for Functional Analysis of the Rice Genome

H. Leung, Chang-deok Han, G. Droc, 2013 .

Molecular mechanisms underlying the impact of mutations in SOD1 on its conformational properties associated with amyotrophic lateral sclerosis as revealed with molecular modelling

S. Ramachandran, V. Ivanisenko, N. Ivanisenko, 2018, BMC Structural Biology.

Identification of Novel Adhesins of M. tuberculosis H37Rv Using Integrated Approach of Multiple Computational Algorithms and Experimental Analysis

S. Ramachandran, Shahila Parween, P. Nahar, 2013, PloS one.

Simple sequence proteins in prokaryotic proteomes

S. Ramachandran, Muthiah Gnanamani, Mekapati Bala Subramanyam, 2006, BMC Genomics.

Profilin plays a role in cell elongation, cell shape maintenance, and flowering in Arabidopsis.

S. Ramachandran, N. Chua, C. Dong, 2000, Plant physiology.

ADF Proteins Are Involved in the Control of Flowering and Regulate F-Actin Organization, Cell Expansion, and Organ Growth in Arabidopsis

S. Ramachandran, N. Chua, G. Xia, 2001, The Plant Cell Online.

Over-expression of OSRIP18 increases drought and salt tolerance in transgenic rice plants

S. Ramachandran, P. Venkatesh, Shuye Jiang, 2011, Transgenic Research.

Genome sequence of a clinical isolate of dermatophyte, Trichophyton rubrum from India.

S. Ramachandran, R. Pandey, Shukla Das, 2015, FEMS microbiology letters.

Expansion Mechanisms and Evolutionary History on Genes Encoding DNA Glycosylases and Their Involvement in Stress and Hormone Signaling

S. Ramachandran, Shuye Jiang, 2016, Genome biology and evolution.

Identification and molecular characterization of tissue-preferred rice genes and their upstream regularly sequences on a genome-wide level

S. Ramachandran, Shuye Jiang, J. Vanitha, 2014, BMC Plant Biology.

The OsPS1-F gene regulates growth and development in rice by modulating photosynthetic electron transport rate

S. Ramachandran, Rengasamy Ramamoorthy, Prakash P. Kumar, 2018, Plant Cell Reports.

Improving protein content and quality by over-expressing artificially synthetic fusion proteins with high lysine and threonine constituent in rice plants

S. Ramachandran, Shuye Jiang, Lifen Xie, 2016, Scientific Reports.

A Novel Binary T-Vector with the GFP Reporter Gene for Promoter Characterization

S. Ramachandran, Shuye Jiang, J. Vanitha, 2014, PloS one.

Oryza sativa Cytochrome P450 Family Member OsCYP96B4 Reduces Plant Height in a Transcript Dosage Dependent Manner

S. Ramachandran, Shuye Jiang, Rengasamy Ramamoorthy, 2011, PloS one.

Genetic variation and expression diversity between grain and sweet sorghum lines

S. Ramachandran, Shuye Jiang, J. Vanitha, 2013, BMC Genomics.

Expansion Mechanisms and Functional Divergence of the Glutathione S-Transferase Family in Sorghum and Other Higher Plants

S. Ramachandran, Nadimuthu Kumar, Shuye Jiang, 2010, DNA research : an international journal for rapid publication of reports on genes and genomes.

Engineering geminivirus resistance in Jatropha curcus

S. Ramachandran, N. Chua, Jian Ye, 2014, Biotechnology for Biofuels.

Intrinsically disordered protein from a pathogenic mesophile Mycobacterium tuberculosis adopts structured conformation at high temperature

Surinder Kumar, S. Ramachandran, S. Maiti, 2007, Proteins.

T2DiACoD: A Gene Atlas of Type 2 Diabetes Mellitus Associated Complex Disorders

S. Ramachandran, Namita Singh, A. Mobeen, 2017, Scientific Reports.

Capsicum annuum enhances L-lactate production by Lactobacillus acidophilus: implication in curd formation.

Smriti Sharma, S. Ramachandran, Sriyans Jain, 2013, Journal of dairy science.

ARC: Automated Resource Classifier for agglomerative functional classification of prokaryotic proteins using annotation texts

S. Ramachandran, Naveen Kumar, Muthiah Gnanamani, 2007, Journal of Biosciences.

Arabidopsis profilins are functionally similar to yeast profilins: identification of a vascular bundle-specific profilin and a pollen-specific profilin.

S. Ramachandran, N. Chua, U. Surana, 1996, The Plant journal : for cell and molecular biology.

Identification of L84F mutation with a novel nucleotide change c.255G > T in the superoxide dismutase gene in a North Indian family with amyotrophic lateral sclerosis

R. Kukreti, S. Ramachandran, V. Taneja, 2016, Amyotrophic lateral sclerosis & frontotemporal degeneration.

Downregulation of miRNAs during Delayed Wound Healing in Diabetes: Role of Dicer

S. Ramachandran, M. Datta, Rangoli Aggarwal, 2015, Molecular medicine.

Impact of Colchicine Treatment on Sorghum bicolor BTÃ—623

S. Ramachandran, Shuye Jiang, J. Vanitha, 2013 .

Genome-wide identification and molecular characterization of Ole_e_I, Allerg_1 and Allerg_2 domain-containing pollen-allergen-like genes in Oryza sativa.

S. Ramachandran, Shuye Jiang, P. Jasmin, 2005, DNA research : an international journal for rapid publication of reports on genes and genomes.

Immunoinformatics as a Tool for New Antifungal Vaccines.

S. Ramachandran, Rupanjali Chaudhuri, 2017, Methods in molecular biology.

Mining from Complete Proteomes to Identify Adhesins and Adhesin-Like Proteins: A Rapid Aid to Experimental Researchers

Preti Jain, S. Ramachandran, Kaushal Kumar, 2006 .

Computational screening for new inhibitors of M. tuberculosis mycolyltransferases antigen 85 group of proteins as potential drug targets

S. Ramachandran, V. Ivanisenko, N. Ivanisenko, 2013, Journal of biomolecular structure & dynamics.

Identification and molecular characterization of myosin gene family in Oryza sativa genome.

S. Ramachandran, Shuye Jiang, 2004, Plant & cell physiology.

Sucrose metabolism gene families and their biological functions

S. Ramachandran, Shuye Jiang, Jizhou Wang, 2015, Scientific Reports.

In vitro Regeneration and Genetic Transformation of Soybean: Current Status and Future Prospects

S. Ramachandran, Shuye Jiang, A. Ganapathi, 2013 .

In silico selection of an aptamer to estrogen receptor alpha using computational docking employing estrogen response elements as aptamer-alike molecules

Srinivasan Ramachandran, Pradip Nahar, Rajesh Ahirwar, 2016, Scientific Reports.

Genome-wide analysis of cyclin family in rice (Oryza Sativa L.)

Jun Li, S. Ramachandran, Zhendong Ji, 2006, Molecular Genetics and Genomics.

Negative Air Ions and Their Effects on Human Health and Air Quality Improvement

S. Ramachandran, Shuye Jiang, Ali Ma, 2018, International journal of molecular sciences.

Evolutionary history and stress regulation of the lectin superfamily in higher plants

Srinivasan Ramachandran, Shu-Ye Jiang, S. Ramachandran, 2010, BMC Evolutionary Biology.

Morphological and genetic diversity of symbiotic cyanobacteria from cycads

S. Ramachandran, M. Gunasekaran, N. Thajuddin, 2010, Journal of basic microbiology.

De Novo Transcriptome Sequencing Reveals Important Molecular Networks and Metabolic Pathways of the Plant, Chlorophytum borivilianum

Sunil Kumar, J. Kaur, S. Ramachandran, 2013, PloS one.

Inhibition of Mycobacterium tuberculosis dihydrodipicolinate synthase by alpha-ketopimelic acid and its other structural analogues

S. Ramachandran, V. Navratna, B. Gopal, 2016, Scientific Reports.

MalVac: Database of malarial vaccine candidates

Srinivasan Ramachandran, Rupanjali Chaudhuri, Harinder Singh, 2008, Malaria Journal.

Genome-wide survey of the RIP domain family in Oryza sativa and their expression profiles under various abiotic and biotic stresses

S. Ramachandran, P. Venkatesh, Shuye Jiang, 2008, Plant Molecular Biology.

Genetic Landscape of Common Epilepsies: Advancing towards Precision in Treatment

Y. Hasija, R. Kukreti, S. Ramachandran, 2020, International journal of molecular sciences.

Prediction of Virulence Factors Using Bioinformatics Approaches

S. Ramachandran, Rupanjali Chaudhuri, 2014, Methods in molecular biology.

The structure of Rv3717 reveals a novel amidase from Mycobacterium tuberculosis

Surinder Kumar, S. Ramachandran, Atul Kumar, 2013, Acta crystallographica. Section D, Biological crystallography.

Comparative transcriptional profiling and evolutionary analysis of the GRAM domain family in eukaryotes.

S. Ramachandran, Shuye Jiang, Rengasamy Ramamoorthy, 2008, Developmental biology.

Comparative and evolutionary analysis of genes encoding small GTPases and their activating proteins in eukaryotic genomes.

S. Ramachandran, Shuye Jiang, 2006, Physiological genomics.

The low complexity proteins from enteric pathogenic bacteria: Taxonomic parallels embedded in diversity

Srinivasan Ramachandran, Tannistha Nandi, Krishnamoorthy Kannan, 2003, Silico Biol..

Clusters of proteins in archaeal and bacterial proteomes using compositional analysis

Srinivasan Ramachandran, Tannistha Nandi, Samir K. Brahmachari, 2004, Silico Biol..

Valine-glutamine (VQ) motif coding genes are ancient and non-plant-specific with comprehensive expression regulation by various biotic and abiotic stresses

S. Ramachandran, Shuye Jiang, M. Sevugan, 2018, BMC Genomics.

Genome-Wide Survey and Comparative Analysis of LTR Retrotransposons and Their Captured Genes in Rice and Sorghum

S. Ramachandran, Shuye Jiang, 2013, PloS one.

Over-expression of OSRIP18 increases drought and salt tolerance in transgenic rice plants

S. Ramachandran, P. Venkatesh, Shuye Jiang, 2012, Transgenic Research.

A meta-analysis of comorbidities in COVID-19: Which diseases increase the susceptibility of SARS-CoV-2 infection?

Manoj Kumar Singh, A. Chandra, S. Ramachandran, 2020, Computers in Biology and Medicine.

KOMBAT: Knowledgebase of Microbes’ Battling Agents for Therapeutics

S. Ramachandran, F. Fatima, Pratibha Chaurasia, 2021 .

The Oryza sativa no pollen (Osnop) gene plays a role in male gametophyte development and most likely encodes a C2-GRAM domain-containing protein

S. Ramachandran, M. Cai, Shuye Jiang, 2005, Plant Molecular Biology.

ORYZA SATIVA MYOSIN XI B controls pollen development by photoperiod-sensitive protein localizations.

S. Ramachandran, M. Cai, Shuye Jiang, 2007, Developmental biology.

A comprehensive transcriptional profiling of the WRKY gene family in rice under various abiotic and phytohormone treatments.

S. Ramachandran, Nadimuthu Kumar, P. Venkatesh, 2008, Plant & cell physiology.

Abundance of dinucleotide repeats and gene expression are inversely correlated: a role for gene function in addition to intron length.

Vineet K. Sharma, S. Brahmachari, S. Ramachandran, 2007, Physiological genomics.

Ds insertion mutagenesis as an efficient tool to produce diverse variations for rice breeding

S. Ramachandran, P. Venkatesh, Shuye Jiang, 2007, Plant Molecular Biology.

Natural and artificial mutants as valuable resources for functional genomics and molecular breeding

Srinivasan Ramachandran, Shu-Ye Jiang, S. Ramachandran, 2010, International journal of biological sciences.

Functional Genomics of Rice Pollen and Seed Development by Genome-wide Transcript Profiling and Ds Insertion Mutagenesis

S. Ramachandran, Shuye Jiang, 2010, International journal of biological sciences.

Comparative Genomic and Transcriptomic Analysis of Tandemly and Segmentally Duplicated Genes in Rice

S. Ramachandran, Shuye Jiang, José M. González, 2013, PloS one.

Establishing an efficient Ac/Ds tagging system in rice: large-scale analysis of Ds flanking sequences.

Srinivasan Ramachandran, Doris Bachmann, Rengasamy Ramamoorthy, 2004, The Plant journal : for cell and molecular biology.

Assigning biological functions to rice genes by genome annotation, expression analysis and mutagenesis

Srinivasan Ramachandran, Shu-Ye Jiang, S. Ramachandran, 2010, Biotechnology Letters.

A Novel Complexity Measure for Comparative Analysis of Protein Sequences from Complete Genomes

Debasis Dash, Srinivasan Ramachandran, Rohit Ghai, 2003, Journal of biomolecular structure & dynamics.

Systems Metabolic Alteration in a Semi-Dwarf Rice Mutant Induced by OsCYP96B4 Gene Mutation

S. Ramachandran, Rengasamy Ramamoorthy, Prakash P. Kumar, 2020, International journal of molecular sciences.

A Comprehensive Survey on the Terpene Synthase Gene Family Provides New Insight into Its Evolutionary Patterns

S. Ramachandran, Rajani Sarojam, Shuye Jiang, 2019, Genome biology and evolution.

Genome-Wide Survey on Genomic Variation, Expression Divergence, and Evolution in Two Contrasting Rice Genotypes under High Salinity Stress

S. Ramachandran, Shuye Jiang, Rengasamy Ramamoorthy, 2013, Genome biology and evolution.

The Efficacy of Plant-Based Ionizers in Removing Aerosol for COVID-19 Mitigation

S. Ramachandran, X. Loh, D. Daniel, 2021, Research.

Integrative immunoinformatics for Mycobacterial diseases in R platform

Srinivasan Ramachandran, Rupanjali Chaudhuri, Deepika Kulshreshtha, 2014, Systems and Synthetic Biology.

Mutant Resources in Rice for Functional Genomics of the Grasses[W]

H. Leung, Chang-deok Han, Qifa Zhang, 2009, Plant Physiology.

Genetic variation and expression diversity between grain and sweet sorghum lines

S. Ramachandran, Shuye Jiang, J. Vanitha, 2013, BMC Genomics.

Comparative genomics using data mining tools

Srinivasan Ramachandran, S. Ramachandran, T. Nandi, 2002, Journal of Biosciences.

Functional characterization of transposon-tagged abiotic stress-responsive rice genes and their molecular polymorphisms among various stress-tolerant genotypes

S. Ramachandran, Shuye Jiang, Lifen Xie, 2018, Molecular Breeding.

Identification and molecular characterization of tissue-preferred rice genes and their upstream regularly sequences on a genome-wide level

S. Ramachandran, Shuye Jiang, J. Vanitha, 2014, BMC Plant Biology.

Identification of plant cytoskeletal, cell cycle-related and polarity-related proteins using Schizosaccharomyces pombe.

S. Ramachandran, N. Chua, V. Simanis, 1996, The Plant journal : for cell and molecular biology.

(TG/CA)n repeats in human gene families: abundance and selective patterns of distribution according to function and gene length

Vineet K. Sharma, S. Brahmachari, S. Ramachandran, 2005, BMC Genomics.

Transposon insertional mutants: a resource for rice functional genomics.

Chang-deok Han, S. Ramachandran, V. Sundaresan, 2007 .

(TG/CA)n Repeats in Human Housekeeping Genes

Vineet K. Sharma, S. Brahmachari, Anu Sharma, 2003, Journal of biomolecular structure & dynamics.

Large-scale systematic study on stability of the Ds element and timing of transposition in rice.

S. Ramachandran, Rengasamy Ramamoorthy, Ildikó Szeverényi, 2006, Plant & cell physiology.

. mineR : An R package with text-mining algorithms to analyse

S. Ramachandran, A. Shah, J. Rani, 2015 .

Corrigendum: Integration of Metabolic Modeling with Gene Co-expression Reveals Transcriptionally Programmed Reactions Explaining Robustness in Mycobacterium tuberculosis

S. Ramachandran, A. Mobeen, B. L. Puniya, 2016, Scientific Reports.

Integration of Metabolic Modeling with Gene Co-expression Reveals Transcriptionally Programmed Reactions Explaining Robustness in Mycobacterium tuberculosis

Srinivasan Ramachandran, Bhanwar Lal Puniya, Deepika Kulshreshtha, 2016, Scientific Reports.

SPAAN: a software program for prediction of adhesins and adhesin-like proteins using neural networks

Preti Jain, S. Ramachandran, Kaushal Kumar, 2004, Bioinform..

Expoldb: expression linked polymorphism database with inbuilt tools for analysis of expression and simple repeats

Vineet K. Sharma, D. Lancet, S. Brahmachari, 2006, BMC Genomics.

Improved regression model to predict an impact of SOD1 mutations on ALS patients survival time based on analysis of hydrogen bond stability.

S. Ramachandran, V. Ivanisenko, N. Ivanisenko, 2019, Journal of molecular graphics & modelling.

Expression and molecular characterization of the Mycobacterium tuberculosis PII protein.

S. Ramachandran, S. Maiti, S. Pintus, 2010, Journal of biochemistry.

DALIA- a comprehensive resource of Disease Alleles in Arab population.

Vandana Sharma, V. Scaria, S. Sivasubbu, 2021, PloS one.

Folding–unfolding transitions of Rv3221c on the pressure–temperature plane

S. Ramachandran, Sriyans Jain, L. Smeller, 2013 .

Global Text Mining and Development of Pharmacogenomic Knowledge Resource for Precision Medicine

Sandeep Grover, Jyoti Rani, Priyanka Singh, 2019, Front. Pharmacol..

Probing the amino acids critical for protein oligomerisation and protein-nucleotide interaction in Mycobacterium tuberculosis PII protein through integration of computational and experimental approaches.

S. Ramachandran, S. Maiti, R. Mandal, 2013, Biochimica et biophysica acta.

Identification of perturbed pathways rendering susceptibility to tuberculosis in type 2 diabetes mellitus patients using BioNSi simulation of integrated networks of implicated human genes

S. Ramachandran, J. Rani, U. Bajpai, 2021, Journal of Biosciences.

Translational Bioinformatics Methods for Drug Repurposing

S. Ramachandran, J. Rani, U. Bajpai, 2021 .

Adaptive convergent evolution of genome proofreading in SARS-CoV2: insights into the Eigen’s paradox

Vivek T. Natarajan, S. Ramachandran, K. Aswin, 2021, bioRxiv.