S. Nechaev

发表

Global Analysis of Short RNAs Reveals Widespread Promoter-Proximal Stalling and Arrest of Pol II in Drosophila

D. Fargo, S. Nechaev, G. dos Santos, 2010, Science.

The interface of sigma with core RNA polymerase is extensive, conserved, and functionally specialized.

C. Gross, J. Roberts, S. Nechaev, 1999, Genes & development.

Bidirectional Transcription Arises from Two Distinct Hubs of Transcription Factor Binding and Active Chromatin.

David C Fargo, D. Fargo, S. Nechaev, 2015, Molecular cell.

RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo

Manolis Kellis, Richard A Young, Michael Levine, 2007, Nature Genetics.

Pol II waiting in the starting gates: Regulating the transition from transcription initiation into productive elongation.

S. Nechaev, K. Adelman, Karen Adelman, 2011, Biochimica et biophysica acta.

RNA polymerase is poised for activation across the genome

Ruchir Shah, Joel S Parker, Julia Zeitlinger, 2007, Nature Genetics.

Regulated communication between the upstream face of RNA polymerase and the β′ subunit jaw domain

S. Nechaev, K. Severinov, N. Zenkin, 2004, The EMBO journal.

Transcriptional Activation of Agrobacterium tumefaciens Virulence Gene Promoters in Escherichia coli Requires the A. tumefaciens rpoA Gene, Encoding the Alpha Subunit of RNA Polymerase

S. Nechaev, H. Yang, K. Severinov, 1999, Journal of bacteriology.

RNA polymerase II pausing can be retained or acquired during activation of genes involved in the epithelial to mesenchymal transition

S. Nechaev, Jessica A Warns, Archana Dhasarathy, 2015, Nucleic acids research.

Immediate mediators of the inflammatory response are poised for gene activation through RNA polymerase II stalling

S. Nechaev, K. Adelman, I. Rogatsky, 2009, Proceedings of the National Academy of Sciences.

PARP-1/2 Inhibitor Olaparib Prevents or Partially Reverts EMT Induced by TGF-β in NMuMG Cells

S. Nechaev, Archana Dhasarathy, G. Folle, 2019, International journal of molecular sciences.

The elusive object of desire--interactions of bacteriophages and their hosts.

S. Nechaev, K. Severinov, 2008, Current opinion in microbiology.

Genome-wide RNA pol II initiation and pausing in neural progenitors of the rat

S. Nechaev, R. N. Saha, C. J. Dunn, 2019, BMC Genomics.

RapA: completing the transcription cycle?

S. Nechaev, K. Severinov, 2008, Structure.

Transcriptional Responses of Cancer Cells to Heat Shock-Inducing Stimuli Involve Amplification of Robust HSF1 Binding

S. Nechaev, D. Parrello, S. Dastidar, 2022, bioRxiv.

Recombinant Thermus aquaticus RNA Polymerase, a New Tool for Structure-Based Analysis of Transcription

S. Nechaev, K. Severinov, E. Campbell, 2001, Journal of bacteriology.

Crystal structure of the bacteriophage T4 late-transcription coactivator gp33 with the β-subunit flap domain of Escherichia coli RNA polymerase

E. Geiduschek, S. Nechaev, S. Darst, 2011, Proceedings of the National Academy of Sciences.

The bacteriophage T4 late-transcription coactivator gp33 binds the flap domain of Escherichia coli RNA polymerase.

E. Geiduschek, S. Nechaev, J. Leonetti, 2004, Proceedings of the National Academy of Sciences of the United States of America.

Mutations of Bacterial RNA Polymerase Leading to Resistance to Microcin J25*

S. Nechaev, K. Severinov, R. Landick, 2002, The Journal of Biological Chemistry.

Bacteriophage-induced modifications of host RNA polymerase.

S. Nechaev, K. Severinov, 2003, Annual review of microbiology.

A novel bacteriophage-encoded RNA polymerase binding protein inhibits transcription initiation and abolishes transcription termination by host RNA polymerase.

S. Nechaev, Yulia Yuzenkova, K. Severinov, 2002, Journal of molecular biology.

β subunit residues 186-433 and 436-445 are commonly used by Eσ54 and Eσ70 RNA polymerase for open promoter complex formation

S. Nechaev, K. Severinov, M. Buck, 2002 .

Dissection of Two Hallmarks of the Open Promoter Complex by Mutation in an RNA Polymerase Core Subunit*

S. Nechaev, K. Severinov, M. Chlenov, 2000, The Journal of Biological Chemistry.

The role of an upstream promoter interaction in initiation of bacterial transcription

E. Geiduschek, S. Nechaev, E Peter Geiduschek, 2006, The EMBO journal.

Enhancer-Dependent Transcription by Bacterial RNA Polymerase: The β Subunit Downstream Lobe Is Used by σ54 During Open Promoter Complex Formation

Susan Jones, S. Nechaev, K. Severinov, 2003 .

On prediction of regulatory genes by analysis of C.elegans functional networks

S. Nechaev, O. Valba, O. Vasieva, 2013, 1302.3349.

NELF-mediated stalling of Pol II can enhance gene expression by blocking promoter-proximal nucleosome assembly.

Leping Li, J. Collins, S. Nechaev, 2008, Genes & development.

Epigenetic Modulation of Microglial Inflammatory Gene Loci in Helminth-Induced Immune Suppression

S. Nechaev, A. Chauhan, Jyotika Sharma, 2015, ASN neuro.

The Histone Deacetylase SIRT6 Restrains Transcription Elongation via Promoter-Proximal Pausing.

K. Ross, S. Ramaswamy, R. Sadreyev, 2019, Molecular cell.

Genome-wide RNA pol II initiation and pausing in neural progenitors of the rat

S. Nechaev, R. N. Saha, C. J. Dunn, 2019, BMC Genomics.

RNA polymerase II pausing as a context-dependent reader of the genome.

S. Nechaev, A. Scheidegger, Adam Scheidegger, 2016, Biochemistry and cell biology = Biochimie et biologie cellulaire.

Stable pausing by RNA polymerase II provides an opportunity to target and integrate regulatory signals.

D. Fargo, S. Nechaev, K. Adelman, 2013, Molecular cell.

Promoter-proximal Pol II: When stalling speeds things up

S. Nechaev, K. Adelman, 2008, Cell cycle.

Targeting the Transcriptome Through Globally Acting Components

S. Nechaev, D. Parrello, M. Vlasenok, 2021, Frontiers in Genetics.

MicroRNA and mRNA Transcriptome Profiling in Primary Human Astrocytes Infected with Borrelia burgdorferi

S. Nechaev, Archana Dhasarathy, C. Brissette, 2017, PloS one.

Analysis of paired end Pol II ChIP-seq and short capped RNA-seq in MCF-7 cells

S. Nechaev, Adam B. Burkholder, A. Scheidegger, 2015, Genomics data.

The role of the T7 Gp2 inhibitor of host RNA polymerase in phage development.

W. Robins, S. Nechaev, K. Severinov, 2010, Journal of molecular biology.

Purification and characterization of bacteriophage-encoded inhibitors of host RNA polymerase: T-odd phage gp2-like proteins.

S. Nechaev, K. Severinov, D. Imburgio, 2003, Methods in enzymology.

Inhibition of Escherichia coli RNA polymerase by bacteriophage T7 gene 2 protein.

S. Nechaev, K. Severinov, 1999, Journal of molecular biology.

Genome of Xanthomonas oryzae bacteriophage Xp10: an odd T-odd phage.

A. Mushegian, S. Nechaev, K. Severinov, 2003, Journal of molecular biology.

RNA Polymerase Stalling at Developmental Control Genes in the Drosophila Embryo – Supplementary Information

Manolis Kellis, J. Zeitlinger, R. Young, 2007 .

1 RNA Polymerase Stalling at Developmental Control Genes in the Drosophila Embryo

Manolis Kellis, J. Zeitlinger, R. Young, 2007 .

Dissection of the bacteriophage T4 late promoter complex.

E. Geiduschek, S. Nechaev, 2008, Journal of molecular biology.

On predicting regulatory genes by analysis of functional networks in C. elegans

L. B. Snoek, S. Nechaev, O. Valba, 2015, BioData Mining.

Searching the Human Genome for Snail and Slug with DNA@Home

Travis Desell, Sergei Nechaev, Kristopher Zarns, 2015, 2015 IEEE 11th International Conference on e-Science.

Bidirectional Transcription Arises from Two Distinct Hubs of Transcription Factor Binding and Active Chromatin.

D. Fargo, S. Nechaev, K. Adelman, 2015, Molecular cell.

The Histone Deacetylase SIRT6 Restrains Transcription Elongation via Promoter-Proximal Pausing.

K. Ross, S. Ramaswamy, R. Sadreyev, 2019, Molecular cell.

Statistics of noncoding RNAs: alignment and secondary structure prediction

S. Nechaev, S. Nechaev, O. Valba, 2011 .

Analysis of Mechanisms Underlying Adaptation Processes

S. Nechaev, N. Ozernyuk, 2002, Biology Bulletin of the Russian Academy of Sciences.

Global Analysis of Short RNAs Reveals Widespread Promoter-Proximal Stalling and Arrest of Pol II in Drosophila

D. Fargo, S. Nechaev, G. dos Santos, 2010, Science.