Eunok Paek

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Isotopic peak intensity ratio based algorithm for determination of isotopic clusters and monoisotopic masses of polypeptides from high-resolution mass spectrometric data.

Heejin Park, Kunsoo Park, J. Yoon, 2008, Analytical chemistry.

Comprehensive and sensitive proteogenomics data analysis strategy based on complementary multi-stage database search

Bing Zhang, Eunok Paek, Xiaojing Wang, 2017 .

Unrestrictive Identification of Multiple Post-translational Modifications from Tandem Mass Spectrometry Using an Error-tolerant Algorithm Based on an Extended Sequence Tag Approach*S

Heejin Park, Eunok Paek, Kong-Joo Lee, 2008, Molecular & Cellular Proteomics.

Fast Multi-blind Modification Search through Tandem Mass Spectrometry*

Eunok Paek, N. Bandeira, Seungjin Na, 2011, Molecular & Cellular Proteomics.

Evaluating the effect of database inflation in proteogenomic search on sensitive and reliable peptide identification

Kyu-Baek Hwang, Eunok Paek, Sang-Won Lee, 2016, BMC Genomics.

Comprehensive analysis of human protein N-termini enables assessment of various protein forms

Eunok Paek, Cheolju Lee, Shinyeong Ju, 2017, Scientific Reports.

Proteogenomic Characterization of Human Early-Onset Gastric Cancer.

D. Park, D. Hwang, K. Song, 2019, Cancer cell.

A justification-based theory of explanation

Eunok Paek, 1992 .

Software eyes for protein post-translational modifications.

Eunok Paek, Seungjin Na, Eunok Paek, 2015, Mass spectrometry reviews.

NextSearch: A Search Engine for Mass Spectrometry Data against a Compact Nucleotide Exon Graph.

Heejin Park, Eunok Paek, Hyunwoo Kim, 2015, Journal of proteome research.

Novel Oxidative Modifications in Redox-Active Cysteine Residues*

Sun Choi, Eunok Paek, D. Shin, 2010, Molecular & Cellular Proteomics.

Integrated pharmaco-proteogenomics defines two subgroups in isocitrate dehydrogenase wild-type glioblastoma with prognostic and therapeutic opportunities

Se Hoon Kim, Jason K. Sa, D. Nam, 2020, Nature Communications.

The Protein-disulfide Isomerase DsbC Cooperates with SurA and DsbA in the Assembly of the Essential β-Barrel Protein LptD*

D. Vertommen, J. Collet, Eunok Paek, 2010, The Journal of Biological Chemistry.

Target-Decoy with Mass Binning: a simple and effective validation method for shotgun proteomics using high resolution mass spectrometry.

Eunok Paek, Cheolju Lee, Je-Hyun Baek, 2010, Journal of proteome research.

Reinvestigation of Aminoacyl-TRNA Synthetase Core Complex by Affinity Purification-Mass Spectrometry Reveals TARSL2 as a Potential Member of the Complex

Hyungwon Choi, Yoon Ki Kim, Eunok Paek, 2013, PloS one.

Cataract-Associated New Mutants S175G/H181Q of βΒ2-Crystallin and P24S/S31G of γD-Crystallin Are Involved in Protein Aggregation by Structural Changes

Eunok Paek, Kong-Joo Lee, Seungjin Na, 2020, International journal of molecular sciences.

Cataract-Associated New Mutants S175G/H181Q of βΒ2-Crystallin and P24S/S31G of γD-Crystallin Are Involved in Protein Aggregation by Structural Changes

Eunok Paek, Kong-Joo Lee, Seungjin Na, 2020, bioRxiv.

deMix: Decoding Deuterated Distributions from Heterogeneous Protein States via HDX-MS

Eunok Paek, Jae-Jin Lee, Kong-Joo Lee, 2019, Scientific Reports.

Proteogenomic landscape of human pancreatic ductal adenocarcinoma in an Asian population reveals tumor cell-enriched and immune-rich subtypes

Do Young Hyeon, Yeon Woong Choo, Juhee Jeong, 2022, Nature Cancer.

Monoisotopic mass determination algorithm for selenocysteine-containing polypeptides from mass spectrometric data based on theoretical modeling of isotopic peak intensity ratios.

Heejin Park, Kunsoo Park, Sunho Lee, 2012, Journal of proteome research.

Automating a classification task based on an augmented thesaurus

Eunok Paek, Hye-Jeong Jeon, Eunok Paek, 1997, IUI '97.

New algorithm for the identification of intact disulfide linkages based on fragmentation characteristics in tandem mass spectra.

Eunok Paek, Kong-Joo Lee, Hwa-Young Kim, 2010, Journal of proteome research.

Strategy for comprehensive identification of post-translational modifications in cellular proteins, including low abundant modifications: application to glyceraldehyde-3-phosphate dehydrogenase.

Eunok Paek, Kong-Joo Lee, Eunok Paek, 2008, Journal of proteome research.

Multi-layered Representation for Cell Signaling Pathways*

Eunok Paek, Kong-Joo Lee, Jisook Park, 2004, Molecular & Cellular Proteomics.

Evaluating the effect of database inflation in proteogenomic search on sensitive and reliable peptide identification

Kyu-Baek Hwang, Eunok Paek, Sang-Won Lee, 2016, BMC Genomics.

Integrated pharmaco-proteogenomics defines two subgroups in isocitrate dehydrogenase wild-type glioblastoma with prognostic and therapeutic opportunities

D. Nam, Jong-Hee Chang, Eunok Paek, 2020, Nature Communications.

A justification‐based approach to causal reasoning

Eunok Paek, Eunok Paek, 1994, Int. J. Intell. Syst..

A Circumscriptive Theory for Causal and Evidential Support

Eunok Paek, Eunok Paek, 1990, AAAI.

MutCombinator: identification of mutated peptides allowing combinatorial mutations using nucleotide-based graph search

Eunok Paek, Seunghyuk Choi, Eunok Paek, 2020, Bioinform..

Compact variant‐rich customized sequence database and a fast and sensitive database search for efficient proteogenomic analyses

Hokeun Kim, Sanghyuk Lee, Sang-Won Lee, 2014, Proteomics.

Common Repository of FBS Proteins (cRFP) to be added to a search database for mass spectrometric analysis of cell secretome.

E. Yi, Eunok Paek, Jin Young Kim, 2019, Journal of proteome research.

TIDD: tool-independent and data-dependent machine learning for peptide identification

Kyu-Baek Hwang, Eunok Paek, Seungjin Na, 2022, BMC Bioinformatics.

Computational methods in mass spectrometry-based structural proteomics for studying protein structure, dynamics, and interactions

Seungjin Na, Eunok Paek, Eunok Paek, 2020, Computational and structural biotechnology journal.

Systematic Comparison of False-Discovery-Rate-Controlling Strategies for Proteogenomic Search Using Spike-in Experiments.

Kyu-Baek Hwang, Eunok Paek, Hyunwoo Kim, 2017, Journal of proteome research.

HiXCorr: a portable high-speed XCorr engine for high-resolution tandem mass spectrometry

Eunok Paek, Hyunwoo Kim, Heejin Park, 2015, Bioinform..

Prediction of novel modifications by unrestrictive search of tandem mass spectra.

Eunok Paek, Seungjin Na, Eunok Paek, 2009, Journal of proteome research.

ACTG: novel peptide mapping onto gene models

Eunok Paek, Hyunwoo Kim, Seung-Hyuk Choi, 2016, Bioinform..

Sequence analysis ACTG: novel peptide mapping onto gene models

Eunok Paek, Seunghyuk Choi, Hyunwoo J. Kim, 2017 .

Proteogenomic approach to UTR peptides identification.

Eunok Paek, Cheolju Lee, Seungjin Na, 2019, Journal of proteome research.

MODi : a powerful and convenient web server for identifying multiple post-translational peptide modifications from tandem mass spectra

Hokeun Kim, Eunok Paek, Kong-Joo Lee, 2006, Nucleic Acids Res..

MODplus: robust and unrestrictive identification of post-translational modifications using mass spectrometry.

Eunok Paek, Seungjin Na, Jihyung Kim, 2019, Analytical chemistry.

Estimating influence of cofragmentation on peptide quantification and identification in iTRAQ experiments by simulating multiplexed spectra.

Kyu-Baek Hwang, Eunok Paek, Hokeun Kim, 2014, Journal of proteome research.

CIFTER: automated charge-state determination for peptide tandem mass spectra.

Eunok Paek, Cheolju Lee, Seungjin Na, 2008, Analytical chemistry.

An English to Korean Transliteration Model of Extended Markov Window

Eunok Paek, Sung Young Jung, SungLim Hong, 2000, COLING.

Characterization of disulfide bonds by planned digestion and tandem mass spectrometry.

Eunok Paek, Duwoon Kim, Jong-Soon Choi, 2015, Molecular bioSystems.

Isoform-specific regulation of Akt by PDGF-induced reactive oxygen species

Eunok Paek, Cristina M Furdui, Jiang Qian, 2011, Proceedings of the National Academy of Sciences.

Quality assessment of tandem mass spectra based on cumulative intensity normalization.

Eunok Paek, Seungjin Na, Eunok Paek, 2006, Journal of proteome research.

High-throughput peptide quantification using mTRAQ reagent triplex

Eunok Paek, Kunsoo Park, Heebum Lee, 2011, BMC Bioinformatics.

MOD i : a powerful and convenient web server for identifying multiple post-translational peptide modifications from tandem mass spectra

Heejin Park, Eunok Paek, Kong-Joo Lee, 2006 .

DbyDeep: Exploration of MS-Detectable Peptides via Deep Learning

Eunok Paek, Seungjin Na, Juho Son, 2023, Analytical Chemistry.

Hypoxia increases the methylated histones to prevent histone clipping and redistribution of heterochromatin during Raf-induced senescence

Eunok Paek, J. Hur, Sujin Yim, 2023, bioRxiv.

New algorithm for the identification of intact disulfide linkages based on fragmentation characteristics in tandem mass spectra.

Eunok Paek, Kong-Joo Lee, Seungjin Na, 2010, Journal of proteome research.

CyGate Provides a Robust Solution for Automatic Gating of Single Cell Cytometry Data

Eunok Paek, Seungjin Na, Yujin Choo, 2023, Analytical chemistry.

Unrestrictive Identification of Multiple Post-translational Modifications from Tandem Mass Spectrometry Using an Error-tolerant Algorithm Based on an Extended Sequence Tag Approach*S

Heejin Park, Eunok Paek, Kong-Joo Lee, 2008, Molecular & Cellular Proteomics.

pXg: Comprehensive Identification of Noncanonical MHC-I–Associated Peptides From De Novo Peptide Sequencing Using RNA-Seq Reads

Eunok Paek, Seunghyuk Choi, 2024, Molecular & cellular proteomics : MCP.