A. Wattam

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Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center

Rida Assaf, Fangfang Xia, Robert Olson, 2016, Nucleic Acids Res..

Searching for signatures across microbial communities: Metagenomic analysis of soil samples from mangrove and other ecosystems

D. Barh, A. Wattam, P. Ghosh, 2017, Scientific Reports.

PATRIC: the Comprehensive Bacterial Bioinformatics Resource with a Focus on Human Pathogenic Species

Joseph L. Gabbard, E. Snyder, B. Sobral, 2011, Infection and Immunity.

Comparative genomic analysis between Corynebacterium pseudotuberculosis strains isolated from buffalo

A. Wattam, V. Azevedo, L. Guimarães, 2017, PloS one.

Rapidly evolving changes and gene loss associated with host switching in Corynebacterium pseudotuberculosis

A. Wattam, V. Azevedo, M. Viana, 2018, PloS one.

PATtyFams: Protein Families for the Microbial Genomes in the PATRIC Database

Maulik Shukla, James J. Davis, Gordon D. Pusch, 2016, Front. Microbiol..

Analysis of Ten Brucella Genomes Reveals Evidence for Horizontal Gene Transfer Despite a Preferred Intracellular Lifestyle

Maulik Shukla, Alice R. Wattam, Kelly P. Williams, 2009, Journal of bacteriology.

Transcriptome profile of Corynebacterium pseudotuberculosis in response to iron limitation

D. Barh, A. Wattam, P. Ghosh, 2019, BMC Genomics.

A synthesis of bacterial and archaeal phenotypic trait data

Lisa R. Moore, Joshua S Madin, N. Price, 2020, Scientific Data.

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

Fangfang Xia, Robert Olson, James J. Davis, 2013, Nucleic Acids Res..

The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities

Rick L. Stevens, James J. Davis, Joseph L. Gabbard, 2019, Nucleic Acids Res..

Cell Division in genus Corynebacterium: protein-protein interaction and molecular docking of SepF and FtsZ in the understanding of cytokinesis in pathogenic species.

A. Wattam, V. Azevedo, A. Góes-Neto, 2018, Anais da Academia Brasileira de Ciencias.

Comparative mangrove metagenome reveals global prevalence of heavy metals and antibiotic resistome across different ecosystems

D. Barh, A. Wattam, P. Ghosh, 2018, Scientific Reports.

Comparative Genomics for Prokaryotes.

J. Setubal, A. Wattam, N. Almeida, 2018, Methods in molecular biology.

Taxonomic classification of strain PO100/5 shows a broader geographic distribution and genetic markers of the recently described Corynebacterium silvaticum

D. Barh, A. Wattam, P. Ghosh, 2020, bioRxiv.

Antimicrobial Resistance Prediction in PATRIC and RAST

Fangfang Xia, Rick Stevens, John Santerre, 2016, Scientific Reports.

A genomic data resource for predicting antimicrobial resistance from laboratory-derived antimicrobial susceptibility phenotypes

James J. Davis, Emily M. Dietrich, G. Pusch, 2021, Briefings Bioinform..

Peptide nucleic acids inhibit growth of Brucella suis in pure culture and in infected murine macrophages.

J. Setubal, A. Wattam, S. Boyle, 2013, International journal of antimicrobial agents.

Curation, integration and visualization of bacterial virulence factors in PATRIC

Maulik Shukla, Alice R. Wattam, David Abraham, 2014, Bioinform..

Noncanonical SMC protein in Mycobacterium smegmatis restricts maintenance of Mycobacterium fortuitum plasmids

W. Jacobs, N. Letvin, A. Wattam, 2014, Proceedings of the National Academy of Sciences.

RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes

Fangfang Xia, Rick Stevens, Robert Olson, 2015, Scientific Reports.

PATRIC, the bacterial bioinformatics database and analysis resource

Yan Zhang, Deborah Hix, Robert Olson, 2013, Nucleic Acids Res..

Genomics Insights Into the Biology and Evolution of Leprosy Bacilli

W. Jacobs, A. Wattam, T. Gillis, 2018 .

Insight of Genus Corynebacterium: Ascertaining the Role of Pathogenic and Non-pathogenic Species

A. Wattam, P. Ghosh, S. Tiwari, 2017, Front. Microbiol..

Identification and molecular epidemiology of methicillin resistant Staphylococcus pseudintermedius strains isolated from canine clinical samples in Argentina

A. Wattam, A. Corso, P. Gagetti, 2019, BMC Veterinary Research.

Comparative Genomics of Early-Diverging Brucella Strains Reveals a Novel Lipopolysaccharide Biosynthesis Pathway

B. Sobral, J. Setubal, A. Hoffmaster, 2012, mBio.

Comparative Genomics of Early-Diverging Brucella Strains Reveals a Novel Lipopolysaccharide Biosynthesis Pathway

B. Sobral, J. Setubal, A. Hoffmaster, 2012, mBio.

Brucella spp. of amphibians comprise genomically diverse motile strains competent for replication in macrophages and survival in mammalian hosts

J. Foster, A. Wattam, G. Vergnaud, 2017, Scientific Reports.

Coccidian parasites (Apicomplexa: Eimeriidae) from insectivores. IV. Four new species in Talpa europaea from England.

A. Wattam, D. Duszynski, 1988, The Journal of protozoology.

Coccidian parasites (Apicomplexa: Eimeriidae) from insectivores. V. Ten forms from the moles of Japan (Euroscaptor, Mogera spp.).

A. Wattam, D. Duszynski, 1988, The Journal of protozoology.

Comparative Phylogenomics and Evolution of the Brucellae Reveal a Path to Virulence

B. Sobral, J. Foster, S. Beckstrom-Sternberg, 2013, Journal of bacteriology.

Transcriptome-Wide Identification of Hfq-Associated RNAs in Brucella suis by Deep Sequencing

A. Wattam, R. Roop, Clayton C. Caswell, 2015, Journal of bacteriology.

Identification and Characterization of Mycobacterial Species Using Whole-Genome Sequences.

M. Hazbón, A. Wattam, M. Strong, 2021, Methods in molecular biology.

PATRIC as a unique resource for studying antimicrobial resistance

Rida Assaf, Fangfang Xia, Rick Stevens, 2017, Briefings Bioinform..

Assembly, Annotation, and Comparative Genomics in PATRIC, the All Bacterial Bioinformatics Resource Center.

Fangfang Xia, Rick Stevens, Robert Olson, 2018, Methods in molecular biology.

Searching for signatures across microbial communities: Metagenomic analysis of soil samples from mangrove and other ecosystems

D. Barh, A. Wattam, P. Ghosh, 2017, Scientific Reports.

Evidence of episodic positive selection in Corynebacterium diphtheriae complex of species and its implementations in identification of drug and vaccine targets

D. Barh, A. Wattam, V. Azevedo, 2022, PeerJ.

An important step forward in the genetic manipulation of mosquito vectors of human disease.

M. G. Kidwell, A. Wattam, 1998, Proceedings of the National Academy of Sciences of the United States of America.

Helicobacter pylori Infections in the Bronx, New York: Surveying Antibiotic Susceptibility and Strain Lineage by Whole-Genome Sequencing

W. Jacobs, A. Wattam, Emmanuel Asare, 2019, Journal of Clinical Microbiology.

Analysis of Corynebacterium silvaticum genomes from Portugal reveals a single cluster and a clade suggested to produce diphtheria toxin

A. Wattam, V. Azevedo, M. Viana, 2023, PeerJ.

Characterization of the First mecA-Positive Multidrug-Resistant Staphylococcus pseudintermedius Isolated from an Argentinian Patient.

A. Wattam, A. Corso, P. Gagetti, 2020, Microbial drug resistance.

Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR

James J. Davis, Emily M. Dietrich, G. Pusch, 2022, Nucleic Acids Res..

A synthesis of bacterial and archaeal phenotypic trait data

Matthew A. Richards, N. Price, E. Rocha, 2020, Scientific Data.

Variation in Aedes aegypti mRNA populations related to strain, sex, and development.

A. Wattam, B. M. Christensen, 1992, The American journal of tropical medicine and hygiene.

Phenotype-Based Threat Assessment

Stephanie L. Servetas, J. Samuel, A. Dickerman, 2022, Proceedings of the National Academy of Sciences of the United States of America.

1 An epidemiological survey on the prevalence of equine peripheral dental caries in the United 2 Kingdom and possible risk factors for its development 3 4

A. Wattam, L. Cornish, M. Tabachnik, 2016 .

Comparative mangrove metagenome reveals global prevalence of heavy metals and antibiotic resistome across different ecosystems

D. Barh, A. Wattam, P. Ghosh, 2018, Scientific Reports.

Enabling comparative modeling of closely related genomes: example genus Brucella

James J. Davis, José P. Faria, R. Overbeek, 2014, 3 Biotech.

Whole genome sequence analysis of NDM-1, CMY-4, and SHV-12 coproducing Salmonella enterica serovar Typhimurium isolated from a case of fatal burn wound infection

A. Wattam, G. Menezes, J. Hays, 2018, Infection and drug resistance.

The Complete Genome Sequence of the Emerging Pathogen Mycobacterium haemophilum Explains Its Unique Culture Requirements

R. Sebra, E. Nordberg, C. Vilchèze, 2015, mBio.

Transcriptome profile of Corynebacterium pseudotuberculosis in response to iron limitation

D. Barh, A. Wattam, P. Ghosh, 2019, BMC Genomics.

Isolation of Brucella inopinata from a White’s tree frog (Litoria caerulea): pose exotic frogs a potential risk to human health?

A. Wattam, S. Appelt, H. Scholz, 2023, Frontiers in Microbiology.

Panaconda: Application of pan-synteny graph models to genome content analysis

Lenwood S. Heath, James J. Davis, James J. Davis, 2017, bioRxiv.

PIML: the Pathogen Information Markup Language

Yongqun He, Alice R. Wattam, Bruno W. S. Sobral, 2004 .

RNA-Rocket: an RNA-Seq analysis resource for infectious disease research

Deborah Hix, Maulik Shukla, Cristina Aurrecoechea, 2014, bioRxiv.

Induced polypeptides associated with filarial worm refractoriness in Aedes aegypti.

A. Wattam, B. M. Christensen, 1992, Proceedings of the National Academy of Sciences of the United States of America.

Noncanonical SMC protein in Mycobacterium smegmatis restricts maintenance of Mycobacterium fortuitum plasmids.

W. Jacobs, N. Letvin, A. Wattam, 2014, Proceedings of the National Academy of Sciences of the United States of America.

Comparative genomic analysis at the PATRIC, a bioinformatic resource center.

Maulik Shukla, Joseph L. Gabbard, Joseph L Gabbard, 2014, Methods in molecular biology.

Further evidence that the genes controlling susceptibility of Aedes aegypti to filarial parasites function independently.

A. Wattam, B. M. Christensen, 1992, The Journal of parasitology.