S. Baginsky

发表

PepSplice: cache-efficient search algorithms for comprehensive identification of tandem mass spectra

Joachim M. Buhmann, Peter Widmayer, Bernd Fischer, 2007, Bioinform..

Dynamic Spectrum Quality Assessment and Iterative Computational Analysis of Shotgun Proteomic Data

R. Aebersold, A. Nesvizhskii, W. Gruissem, 2006, Molecular & Cellular Proteomics.

Genome-Scale Proteomics Reveals Arabidopsis thaliana Gene Models and Proteome Dynamics

P. Zimmermann, W. Gruissem, U. Grossniklaus, 2008, Science.

pep2pro: a new tool for comprehensive proteome data analysis to reveal information about organ-specific proteomes in Arabidopsis thaliana.

W. Gruissem, S. Baginsky, K. Baerenfaller, 2011, Integrative biology : quantitative biosciences from nano to macro.

Plant proteomics: concepts, applications, and novel strategies for data interpretation.

S. Baginsky, 2009, Mass spectrometry reviews.

A workflow to increase the detection rate of proteins from unsequenced organisms in high‐throughput proteomics experiments

J. Buhmann, W. Gruissem, J. Grossmann, 2007, Proteomics.

Rice: an emerging model for plant systems biology

W. Gruissem, S. Baginsky, A. Zychlinski, 2007 .

Proteome analysis of chloroplast mRNA processing and degradation.

W. Gruissem, J. Grossmann, S. Baginsky, 2007, Journal of proteome research.

Proteome analysis of bell pepper (Capsicum annuum L.) chromoplasts.

W. Gruissem, J. Grossmann, S. Baginsky, 2006, Plant & cell physiology.

Arabidopsis thaliana proteomics: from proteome to genome.

W. Gruissem, S. Baginsky, 2006, Journal of experimental botany.

Large-Scale Arabidopsis Phosphoproteome Profiling Reveals Novel Chloroplast Kinase Substrates and Phosphorylation Networks1[W]

W. Gruissem, B. Gerrits, J. Grossmann, 2009, Plant Physiology.

MASCP Gator: An Aggregation Portal for the Visualization of Arabidopsis Proteomics Data1[C][OA]

W. Gruissem, K. V. van Wijk, W. Weckwerth, 2010, Plant Physiology.

The Arabidopsis thaliana Chloroplast Proteome Reveals Pathway Abundance and Novel Protein Functions

K. Sjölander, W. Gruissem, S. Baginsky, 2004, Current Biology.

Proteome Analysis of the Rice Etioplast

K. Sjölander, W. Gruissem, Nandini Krishnamurthy, 2005, Molecular & Cellular Proteomics.

plprot: a comprehensive proteome database for different plastid types.

W. Gruissem, S. Baginsky, Matthias Hirsch-Hoffmann, 2006, Plant & cell physiology.

Protein identification and quantification by data-independent acquisition and multi-parallel collision-induced dissociation mass spectrometry (MS(E)) in the chloroplast stroma proteome.

S. Baginsky, Stefan Helm, D. Dobritzsch, 2014, Journal of proteomics.

Consequences of impaired 1-MDa TIC complex assembly for the abundance and composition of chloroplast high-molecular mass protein complexes

S. Baginsky, D. Köhler, Stefan Helm, 2019, PloS one.

AUDENS: a tool for automated peptide de novo sequencing.

Mark Cieliebak, W. Gruissem, Franz F. Roos, 2005, Journal of proteome research.

Mild proteasomal stress improves photosynthetic performance in Arabidopsis chloroplasts

S. Baginsky, R. Zahedi, G. Hause, 2020, Nature Communications.

Identification of STN7/STN8 kinase targets reveals connections between electron transport, metabolism and gene expression

Sacha Baginsky, Anja Rödiger, Wolfgang Hoehenwarter, 2017, The Plant journal : for cell and molecular biology.

Signal integration by chloroplast phosphorylation networks: an update

S. Baginsky, A. Schönberg, 2012, Front. Plant Sci..

Plastid Proteome Assembly without Toc159: Photosynthetic Protein Import and Accumulation of N-Acetylated Plastid Precursor Proteins[C][W]

Wilhelm Gruissem, Sacha Baginsky, Bernd Roschitzki, 2011, Plant Cell.

Safety first: das Ubiquitin-Proteasom-System (UPS) und die Photosynthese

S. Baginsky, Julia Grimmer, 2021, BIOspektrum.

The secret life of chloroplast precursor proteins in the cytosol.

S. Baginsky, Julia Grimmer, Athina Hristou, 2020, Molecular plant.

Arabidopsis proteomics: a simple and standardizable workflow for quantitative proteome characterization.

S. Baginsky, K. Baerenfaller, Anja Rödiger, 2014, Methods in molecular biology.

The Acidic A-Domain of Arabidopsis Toc159 Occurs as a Hyperphosphorylated Protein1[W][OA]

S. Baginsky, S. Bischof, F. Kessler, 2010, Plant Physiology.

In vivo phosphorylation sites of barley tonoplast proteins identified by a phosphoproteomic approach

B. Gerrits, S. Baginsky, E. Martinoia, 2009, Proteomics.

Current status of the multinational Arabidopsis community

G. Krouk, G. Coruzzi, G. Mendel, 2020, Plant direct.

Protein phosphorylation in chloroplasts - a survey of phosphorylation targets.

S. Baginsky, 2016, Journal of experimental botany.

Systems-based analysis of Arabidopsis leaf growth reveals adaptation to water deficit

Mark Stitt, Pierre Hilson, Peter Bühlmann, 2012, Molecular systems biology.

On the Extent of Tyrosine Phosphorylation in Chloroplasts1

S. Baginsky, Stefan Helm, Anja Rödiger, 2015, Plant Physiology.

Identification and characterization of chloroplast casein kinase II from Oryza sativa (rice).

W. Gruissem, B. Roschitzki, S. Baginsky, 2015, Journal of experimental botany.

Arabidopsis thaliana as a model organism for plant proteome research.

W. Weckwerth, S. Baginsky, S. Wienkoop, 2010, Journal of proteomics.

Redox Regulation of Chloroplast Gene Expression

S. Baginsky, G. Link, 2008 .

Retraction Note: The Arabidopsis NOT4A E3 ligase promotes PGR3 expression and regulates chloroplast translation

D. Gibbs, S. Baginsky, P. Mulo, 2022, Nature Communications.

Glutathione, a Regulator of Chloroplast Transcription

S. Baginsky, G. Link, K. Tiller, 1997 .

Tailored Use of Targeted Proteomics in Plant-Specific Applications

Sacha Baginsky, Anja Rödiger, S. Baginsky, 2018, Front. Plant Sci..

University of Birmingham The Arabidopsis NOT4A E3 ligase promotes PGR3 expression and regulates chloroplast translation

D. Gibbs, S. Baginsky, P. Mulo, 2022 .

Identification of protein N-termini in Cyanophora paradoxa cyanelles: transit peptide composition and sequence determinants for precursor maturation

S. Baginsky, D. Köhler, Stefan Helm, 2015, Front. Plant Sci..

The zinc repository of Cupriavidus metallidurans.

S. Baginsky, D. Nies, Stefan Helm, 2014, Metallomics : integrated biometal science.

Endonucleolytic activation directs dark-induced chloroplast mRNA degradation.

W. Gruissem, S. Baginsky, 2002, Nucleic acids research.

Chloroplast mRNA 3'-end nuclease complex.

W. Gruissem, S. Baginsky, 2001, Methods in enzymology.

Transcription factor phosphorylation by a protein kinase associated with chloroplast RNA polymerase from mustard (Sinapis alba)

S. Baginsky, G. Link, K. Tiller, 1997, Plant Molecular Biology.

Tocopherol Cyclase (VTE1) Localization and Vitamin E Accumulation in Chloroplast Plastoglobule Lipoprotein Particles*

G. Csucs, S. Baginsky, P. Dörmann, 2006, Journal of Biological Chemistry.

Integrated proteome and metabolite analysis of the de‐etiolation process in plastids from rice (Oryza sativa L.)

W. Gruissem, A. Fernie, J. Grossmann, 2011, Proteomics.

Working day and night: Plastid casein kinase 2 catalyses phosphorylation of proteins with diverse functions in light- and dark-adapted plastids.

A. Fernie, S. Baginsky, G. Hause, 2020, The Plant journal : for cell and molecular biology.

Identification of a Vacuolar Sucrose Transporter in Barley and Arabidopsis Mesophyll Cells by a Tonoplast Proteomic Approach1

S. Baginsky, W. Weschke, T. Schneider, 2006, Plant Physiology.

Comparative proteomic analysis of amaranth mesophyll and bundle sheath chloroplasts and their adaptation to salt stress.

S. Baginsky, A. De León-Rodríguez, A. P. Barba de la Rosa, 2014, Journal of plant physiology.

Plastid Proteomics in Higher Plants: Current State and Future Goals1

K. V. van Wijk, S. Baginsky, 2011, Plant Physiology.

Isolation of viral ribonucleoprotein complexes from infected cells by tandem affinity purification

S. Baginsky, M. Schwemmle, Daniel C. Mayer, 2005, Proteomics.

Chloroplast proteomics: potentials and challenges.

W. Gruissem, S. Baginsky, 2004, Journal of experimental botany.

The Peptide Microarray “ChloroPhos1.0” Identifies New Phosphorylation Targets of Plastid Casein Kinase II (pCKII) in Arabidopsis thaliana

S. Baginsky, M. Schutkowski, Stefan Helm, 2014, PloS one.

The chloroplast kinase network: new insights from large-scale phosphoproteome profiling.

W. Gruissem, S. Baginsky, 2009, Molecular plant.

The chloroplast import receptor Toc90 partially restores the accumulation of Toc159 client proteins in the Arabidopsis thaliana ppi2 mutant.

S. Baginsky, S. Bischof, F. Kessler, 2011, Molecular plant.

Gene Expression Analysis, Proteomics, and Network Discovery 1

P. Zimmermann, L. Hennig, W. Gruissem, 2010 .

Gene Expression Analysis, Proteomics, and Network Discovery1

P. Zimmermann, L. Hennig, W. Gruissem, 2009, Plant Physiology.

Semi-supervised LC/MS alignment for differential proteomics

Joachim M. Buhmann, Volker Roth, Bernd Fischer, 2006, ISMB.

A Hidden Markov Model for de Novo Peptide Sequencing

Joachim M. Buhmann, Volker Roth, Peter Widmayer, 2004, NIPS.

The multisubunit chloroplast RNA polymerase A from mustard (Sinapis alba L.). Integration of a prokaryotic core into a larger complex with organelle-specific functions.

S. Baginsky, A. Sickmann, H. Meyer, 2000, European journal of biochemistry.

Identification of cellular interaction partners of the influenza virus ribonucleoprotein complex and polymerase complex using proteomic-based approaches.

Jonas Grossmann, Sacha Baginsky, Martin Schwemmle, 2007, Journal of proteome research.

Chloroplast PNPase exists as a homo-multimer enzyme complex that is distinct from the Escherichia coli degradosome.

W. Gruissem, J. Shabanowitz, D. Hunt, 2001, RNA.

Chloroplast-localized BICAT proteins shape stromal calcium signals and are required for efficient photosynthesis.

S. Baginsky, E. Peiter, G. Hause, 2018, The New phytologist.

Katja Baerenfaller Models and Proteome Dynamics Gene Arabidopsis thaliana Genome-Scale Proteomics Reveals

P. Zimmermann, W. Gruissem, U. Grossniklaus, 2012 .

Jasmonate Controls Polypeptide Patterning in Undamaged Tissue in Wounded Arabidopsis Leaves1[W][OA]

Sacha Baginsky, Edward E. Farmer, Katja Baerenfaller, 2011, Plant Physiology.

Novel Tonoplast Transporters Identified Using a Proteomic Approach with Vacuoles Isolated from Cauliflower Buds1[W][OA]

S. Baginsky, F. Marty, E. Martinoia, 2007, Plant Physiology.

Proteome Dynamics during Plastid Differentiation in Rice1[W]

Wilhelm Gruissem, Sacha Baginsky, Matthias Hirsch-Hoffmann, 2006, Plant Physiology.

Analysis of shotgun proteomics and RNA profiling data from Arabidopsis thaliana chloroplasts.

Wilhelm Gruissem, Sacha Baginsky, W. Gruissem, 2005, Journal of proteome research.

RETRACTED ARTICLE:The Arabidopsis NOT4A E3 ligase promotes PGR3 expression and regulates chloroplast translation

D. Gibbs, S. Baginsky, P. Mulo, 2021, Nature Communications.

Chromoplast differentiation in bell pepper (Capsicum annuum) fruits

S. Baginsky, Stefan Helm, D. Dobritzsch, 2020, bioRxiv.

MSE for Label-Free Absolute Protein Quantification in Complex Proteomes.

S. Baginsky, Stefan Helm, 2018, Methods in molecular biology.

Importance of Translocon Subunit Tic56 for rRNA Processing and Chloroplast Ribosome Assembly1

S. Baginsky, D. Köhler, Stefan Helm, 2016, Plant Physiology.

The RNA-binding protein RNP29 is an unusual Toc159 transport substrate

S. Baginsky, Stefan Helm, Anja Rödiger, 2014, Front. Plant Sci..

Chromoplast differentiation in bell pepper (Capsicum annuum) fruits.

S. Baginsky, Stefan Helm, D. Dobritzsch, 2020, The Plant journal : for cell and molecular biology.

The novel chloroplast outer membrane kinase KOC1 is a required component of the plastid protein import machinery

S. Baginsky, F. Kessler, B. Agne, 2017, The Journal of Biological Chemistry.

Characterization of Chloroplast Protein Import without Tic56, a Component of the 1-Megadalton Translocon at the Inner Envelope Membrane of Chloroplasts1

S. Baginsky, G. Hause, D. Köhler, 2015, Plant Physiology.

High Light-Dependent Phosphorylation of Photosystem II Inner Antenna CP29 in Monocots Is STN7 Independent and Enhances Nonphotochemical Quenching1

S. Baginsky, M. Ballottari, R. Bassi, 2014, Plant Physiology.

Chloroplast transcription at different light intensities. Glutathione-mediated phosphorylation of the major RNA polymerase involved in redox-regulated organellar gene expression.

E. Baena-González, S. Baginsky, E. Aro, 2001, Plant physiology.

MAPKs Influence Pollen Tube Growth by Controlling the Formation of Phosphatidylinositol 4,5-Bisphosphate in an Apical Plasma Membrane Domain

S. Baginsky, P. Krishnamoorthy, R. Golbik, 2017, Plant Cell.

Common and Specific Protein Accumulation Patterns in Different Albino/Pale-Green Mutants Reveals Regulon Organization at the Proteome Level1[W]

R. Motohashi, S. Baginsky, K. Baerenfaller, 2012, Plant Physiology.

Protein import-independent functions of Tic56, a component of the 1-MDa translocase at the inner chloroplast envelope membrane

S. Baginsky, D. Köhler, B. Agne, 2017, Plant signaling & behavior.

Plant Systems Biology

A. Fernie, S. Baginsky, 2007 .

Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF)

Jonas Grossmann, Wilhelm Gruissem, Sacha Baginsky, 2011, Proceedings of the National Academy of Sciences.

Title High light-dependent phosphorylation of Photosystem II inner antenna CP29 in monocots is STN7-independent and enhances Non Photochemical Quenching.

S. Baginsky, M. Ballottari, R. Bassi, 2014 .

Mass spectrometric identification of RNA binding proteins from dried EMSA gels.

W. Gruissem, S. Baginsky, Dominique Stenger, 2004, Journal of proteome research.

Synergistic Toxicity of Copper and Gold Compounds in Cupriavidus metallidurans

S. Baginsky, G. Hause, J. Brugger, 2017, Applied and Environmental Microbiology.

Identification of four plastid‐localized protein kinases

S. Baginsky, B. Grimm, Anja Rödiger, 2016, FEBS letters.

Proteomic identification of the interactome of stalled ribosome nascent chain complexes translating the thylakoid membrane protein D1

C. Herrmann, S. Baginsky, Anja Rödiger, 2022, bioRxiv.

AuDeNS: a tool for automatic De Novo peptide sequencing

Paolo Penna, Zsuzsanna Lipták, Mark Cieliebak, 2002 .

plprot: The Plastid Proteome Database

W. Gruissem, S. Baginsky, T. Kleffmann, 2007 .

Current Status of Arabidopsis Thaliana Proteomics

W. Gruissem, S. Baginsky, 2007 .

Proteome analysis of tobacco bright yellow-2 (BY-2) cell culture plastids as a model for undifferentiated heterotrophic plastids.

W. Gruissem, S. Baginsky, Asima Siddique, 2004, Journal of proteome research.

Proteomics of tobacco bright yellow-2 (BY-2) cell culture plastids.

W. Gruissem, S. Baginsky, M. A. Siddique, 2006 .

Common and Speci fi c Protein Accumulation Patterns in Different Albino / Pale-Green Mutants Reveals Regulon Organization at the Proteome Level 1 [ W ]

R. Motohashi, S. Baginsky, K. Baerenfaller, 2012 .

PTK, the chloroplast RNA polymerase-associated protein kinase from mustard (Sinapis alba), mediates redox control of plastid in vitro transcription§

S. Baginsky, T. Pfannschmidt, G. Link, 1999, Plant Molecular Biology.

The Peptide Microarray ChloroPhos1.0: A Screening Tool for the Identification of Arabidopsis thaliana Chloroplast Protein Kinase Substrates.

S. Baginsky, A. Schönberg, 2015, Methods in molecular biology.

The Arabidopsis NOT4A E3 ligase coordinates PGR3 expression to regulate chloroplast protein translation

D. Gibbs, S. Baginsky, P. Mulo, 2020, bioRxiv.