Ibrahim Numanagic

Cypiripi: exact genotyping of CYP2D6 using high-throughput sequencing data

Salem Malikic, Süleyman Cenk Sahinalp, Ibrahim Numanagic, 2015, Bioinform..

SCALCE: boosting sequence compression algorithms using locally consistent encoding

Faraz Hach, Süleyman Cenk Sahinalp, Can Alkan, 2012, Bioinform..

DeeZ: reference-based compression by local assembly

Faraz Hach, Ibrahim Numanagic, S Cenk Sahinalp, 2014, Nature Methods.

Discovery and genotyping of novel sequence insertions in many sequenced individuals

Faraz Hach, Tunga Güngör, Can Alkan, 2017, Bioinform..

ORMAN: Optimal resolution of ambiguous RNA-Seq multimappings in the presence of novel isoforms

Faraz Hach, Nilgun Donmez, Colin Collins, 2014, Bioinform..

Computational identification of micro‐structural variations and their proteogenomic consequences in cancer

Faraz Hach, Haixu Tang, Süleyman Cenk Sahinalp, 2018, Bioinform..

Fast characterization of segmental duplications in genome assemblies

Faraz Hach, Bonnie Berger, Can Alkan, 2018, Bioinform..

Genomic Data Compression

Süleyman Cenk Sahinalp, Ibrahim Numanagic, Kaiyuan Zhu, 2019, Encyclopedia of Big Data Technologies.

Fast characterization of segmental duplication structure in multiple genome assemblies

Faraz Hach, Can Alkan, Ibrahim Numanagic, 2022, Algorithms for Molecular Biology.