D. Mishmar

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Natural selection shaped regional mtDNA variation in humans

Marty C. Brandon, A. Clark, R. Sukernik, 2002, Proceedings of the National Academy of Sciences of the United States of America.

Effects of Purifying and Adaptive Selection on Regional Variation in Human mtDNA

Marty C. Brandon, D. Wallace, D. Mishmar, 2004, Science.

Copy number variation of the SELENBP1 gene in schizophrenia

Wolfgang Maier, Dan Mishmar, W. Maier, 2008, Schizophrenia Research.

Mitochondrial 16S rRNA Is Methylated by tRNA Methyltransferase TRMT61B in All Vertebrates

Y. Pilpel, N. Ban, Tsutomu Suzuki, 2016, PLoS biology.

CHILD: a new tool for detecting low-abundance insertions and deletions in standard sequence traces

Raphael Cohen, D. Mishmar, N. Geifman, 2011, Nucleic acids research.

Functional Recurrent Mutations in the Human Mitochondrial Phylogeny: Dual Roles in Evolution and Disease

D. Mishmar, H. Hawlena, I. Zhidkov, 2013, Genome biology and evolution.

Disrupting Mitochondrial–Nuclear Coevolution Affects OXPHOS Complex I Integrity and Impacts Human Health

A. Bergman, B. Glaser, D. Mishmar, 2014, Genome biology and evolution.

Coevolution predicts direct interactions between mtDNA-encoded and nDNA-encoded subunits of oxidative phosphorylation complex i.

D. Frishman, A. Fuchs, D. Mishmar, 2010, Journal of molecular biology.

Mutant C. elegans mitofusin leads to selective removal of mtDNA heteroplasmic deletions across generations to maintain fitness

S. Züchner, J. Vance, D. Mishmar, 2022, BMC biology.

Mutant

S. Züchner, J. Vance, A. Zvi, 2020, Definitions.

Mutant C. elegans mitofusin leads to selective removal of mtDNA heteroplasmic deletions at different rates across generations

J. Vance, D. Mishmar, C. Klein, 2019 .

Mutant MFN2/fzo-1 selectively removes mitochondrial DNA heteroplasmy in Caenorhabditis elegans and in Charcot-Marie-Tooth patients

J. Vance, D. Mishmar, C. Klein, 2019, bioRxiv.

MITOMASTER: a bioinformatics tool for the analysis of mitochondrial DNA sequences

Pierre Baldi, Vincent Procaccio, Eduardo Ruiz-Pesini, 2009, Human mutation.

Coordination of mitochondrial and nuclear gene expression regulation in health, evolution and disease

D. Mishmar, Omer Papier, Gavriel Minor, 2022, Current Opinion in Physiology.

mtDNA variation, climatic adaptation, degenerative diseases, and longevity.

D. Wallace, D. Mishmar, E. Ruiz-Pesini, 2003, Cold Spring Harbor symposia on quantitative biology.

Predicting 3D protein structures in light of evolution.

Shimon Bershtein, Daniel Kleiner, Dan Mishmar, 2021, Nature ecology & evolution.

Mitochondrial Involvement in Vertebrate Speciation? The Case of Mito-nuclear Genetic Divergence in Chameleons

A. Bouskila, R. Zarivach, D. Mishmar, 2015, Genome biology and evolution.

Mitochondrial gene expression in single cells shape pancreatic beta cells' sub-populations and explain variation in insulin pathway

D. Mishmar, T. Cohen, H. Medini, 2021, Scientific reports.

Two Homogametic Genotypes – One Crayfish: On the Consequences of Intersexuality

V. Chalifa-Caspi, T. Ventura, D. Mishmar, 2020, iScience.

Common fragile sites: G-band characteristics within an R-band.

B. Kerem, H. Margalit, Y. Mandel-Gutfreund, 1999, American journal of human genetics.

Mitochondrial DNA‐like sequences in the nucleus (NUMTs): Insights into our African origins and the mechanism of foreign DNA integration

Eduardo Ruiz-Pesini, Marty C. Brandon, Dan Mishmar, 2004, Human mutation.

Evolution and disease converge in the mitochondrion.

D. Mishmar, I. Zhidkov, 2010, Biochimica et biophysica acta.

A novel NDUFA1 mutation leads to a progressive mitochondrial complex I-specific neurodegenerative disease.

D. Wallace, D. Mishmar, E. Ruiz-Pesini, 2009, Molecular genetics and metabolism.

Mito-nuclear co-evolution: the positive and negative sides of functional ancient mutations

D. Mishmar, Amit Blumberg, Liron Levin, 2014, Front. Genet..

Mitochondrial DNA HV lineage increases the susceptibility to schizophrenia among Israeli Arabs

M. Rietschel, T. Schulze, W. Maier, 2007, Schizophrenia Research.

Ancient Out-of-Africa Mitochondrial DNA Variants Associate with Distinct Mitochondrial Gene Expression Patterns

D. Mishmar, Liron Levin, T. Cohen, 2016, PLoS genetics.

The Mitochondrial Genome–on Selective Constraints and Signatures at the Organism, Cell, and Single Mitochondrion Levels

D. Mishmar, Noam Shtolz, 2019, Front. Ecol. Evol..

MitoBamAnnotator: A web-based tool for detecting and annotating heteroplasmy in human mitochondrial DNA sequences.

Tal Nagar, Eitan Rubin, Dan Mishmar, 2011, Mitochondrion.

Molecular characterization of a common fragile site (FRA7H) on human chromosome 7 by the cloning of a simian virus 40 integration site.

S. Scherer, L. Tsui, B. Kerem, 1998, Proceedings of the National Academy of Sciences of the United States of America.

Mitochondrial DNA heteroplasmy in diabetes and normal adults: role of acquired and inherited mutational patterns in twins.

Eitan Rubin, Dan Mishmar, T. Spector, 2012, Human molecular genetics.

An enhanced MITOMAP with a global mtDNA mutational phylogeny

Pierre Baldi, Vincent Procaccio, Marie T. Lott, 2006, Nucleic Acids Res..

Title An enhanced MITOMAP with a global mtDNA mutational phylogeny Permalink

Marty C. Brandon, P. Baldi, D. Wallace, 2006 .

The genomic landscape of evolutionary convergence in mammals, birds and reptiles

D. Mishmar, Liron Levin, 2017, Nature Ecology &Evolution.

MtDNA meta-analysis reveals both phenotype specificity and allele heterogeneity: a model for differential association

D. Mishmar, M. Friger, Shani Marom, 2017, Scientific Reports.

Mitochondrial-nuclear co-evolution and its effects on OXPHOS activity and regulation.

D. Mishmar, Amit Blumberg, Dan Bar-Yaacov, 2012, Biochimica et biophysica acta.

Mitochondrial bioenergetics as a major motive force of speciation

A. Templeton, D. Mishmar, Moran Gershoni, 2009, BioEssays : news and reviews in molecular, cellular and developmental biology.

Adaptive selection of mitochondrial complex I subunits during primate radiation.

D. Wallace, B. Gaut, D. Mishmar, 2006, Gene.

Initiation of mtDNA transcription is followed by pausing, and diverges across human cell types and during evolution.

A. Kundaje, C. Danko, D. Mishmar, 2017, Genome research.

Initiation of mtDNA transcription is followed by pausing, and diverge across human cell types and during evolution

A. Kundaje, C. Danko, D. Mishmar, 2016, bioRxiv.

LEMONS – A Tool for the Identification of Splice Junctions in Transcriptomes of Organisms Lacking Reference Genomes

Liron Levin, Liran Carmel, Dan Bar-Yaacov, 2015, PloS one.

Mitochondrial 16S rRNA Is Methylated by tRNA Methyltransferase TRMT61B in All Vertebrates

Yitzhak Pilpel, Lital Alfonta, Dan Bar-Yaacov, 2016, PLoS biology.

RNA–DNA differences in human mitochondria restore ancestral form of 16S ribosomal RNA

Anton Nekrutenko, Liron Levin, Dan Bar-Yaacov, 2013, Genome research.

Obituary: Prof. Lea Reshef: November 1930 - December 2017.

D. Mishmar, O. Meyuhas, 2018, FEBS letters.

Transcription Factors Bind Negatively Selected Sites within Human mtDNA Genes

A. Kundaje, E. Shaulian, E. Meshorer, 2014, Genome biology and evolution.

The metazoan landscape of mitochondrial DNA gene order and content is shaped by selection and affects mitochondrial transcription

D. Mishmar, Noam Shtolz, 2023, Communications Biology.

Treating speciation processes as complex traits

D. Mishmar, Moran Gershoni, 2007, Nature Reviews Genetics.

Mitochondrial DNA Transcription and Its Regulation: An Evolutionary Perspective.

D. Mishmar, T. Cohen, Gilad Barshad, 2018, Trends in genetics : TIG.

Differences in mtDNA haplogroup distribution among 3 Jewish populations alter susceptibility to T2DM complications

D. Arking, B. Glaser, D. Mishmar, 2008, BMC Genomics.

Assembling an arsenal, the scorpion way

D. Mishmar, N. Zilberberg, A. Kozminsky-Atias, 2008, BMC Evolutionary Biology.

Mitochondrial and Nuclear Genome Coevolution

D. Mishmar, Amit Blumberg, Gilad Barshad, 2016 .

Parkin modulates heteroplasmy of truncated mtDNA in Caenorhabditis elegans.

D. Mishmar, A. Ben-Zvi, Dan Bar-Yaacov, 2015, Mitochondrion.

A common pattern of DNase I footprinting throughout the human mtDNA unveils clues for a chromatin-like organization

A. Kundaje, C. Danko, D. Mishmar, 2017, bioRxiv.

Human primitive brain displays negative mitochondrial-nuclear expression correlation of respiratory genes

D. Mishmar, Amit Blumberg, T. Cohen, 2018, Genome research.

Oxidative-phosphorylation genes from the mitochondrial and nuclear genomes co-express in all human tissues except for the ancient brain

D. Mishmar, Amit Blumberg, Gilad Barshad, 2017, bioRxiv.

mtDNA Chromatin-like Organization Is Gradually Established during Mammalian Embryogenesis

A. Kundaje, D. Mishmar, Amit Blumberg, 2019, iScience.

Abstracts of the 16th Annual Meeting of The Israel Society for Neuroscience Eilat, Israel, November 25–27, 2007

Yonina C. Eldar, Karl J. Friston, Leslie G. Ungerleider, 2008, Neural plasticity.

Disease-causing mutations in subunits of OXPHOS complex I affect certain physical interactions

M. Schuldiner, D. Mishmar, Gilad Barshad, 2019, Scientific Reports.

Disease-causing mutations in subunits of OXPHOS complex I affect their physical interactions

M. Schuldiner, D. Mishmar, Gilad Barshad, 2019, bioRxiv.

Immune system cells from COVID-19 patients display compromised mitochondrial-nuclear expression co-regulation and rewiring toward glycolysis

D. Mishmar, H. Medini, Amit Zirman, 2021, iScience.

Ancient mtDNA Genetic Variants Modulate mtDNA Transcription and Replication

D. Wallace, D. Mishmar, G. Shadel, 2009, PLoS genetics.

Mitochondrial and insulin gene expression in single cells shape pancreatic beta cells’ population divergence

D. Mishmar, T. Cohen, H. Medini, 2020, bioRxiv.

Higher Order Organization of the mtDNA: Beyond Mitochondrial Transcription Factor A

D. Mishmar, N. Sondheimer, Mansur M. Naeem, 2019, Frontiers in Genetics.

Ashkenazi Jewish mtDNA haplogroup distribution varies among distinct subpopulations: lessons of population substructure in a closed group

B. Glaser, D. Mishmar, O. Ovadia, 2007, European Journal of Human Genetics.

mtDNA eQTLs and the m1A 16S rRNA modification explain mtDNA tissue-specific gene expression pattern in humans

D. Mishmar, A. Eran, T. Cohen, 2018 .

Current Perspectives: Evolution – 150 Years after "The Origin of Species"

D. Mishmar, 2010 .

A genetic view of the mitochondrial role in ageing: killing us softly.

D. Mishmar, Liron Levin, 2015, Advances in experimental medicine and biology.

Abstracts of the 16th Annual Meeting of The Israel Society for Neuroscience Eilat, Israel, November 25–27, 2007

Yonina C. Eldar, Karl J. Friston, Leslie G. Ungerleider, 2008, Neural plasticity.

Early perceptual loss in depression

Yonina C. Eldar, Karl J. Friston, Charles R. Seger, 2007 .

MtDNA mutation pattern in tumors and human evolution are shaped by similar selective constraints.

D. Mishmar, E. Rubin, I. Zhidkov, 2009, Genome research.

Mitochondrial DNA Variation, but Not Nuclear DNA, Sharply Divides Morphologically Identical Chameleons along an Ancient Geographic Barrier

A. Bouskila, D. Mishmar, O. Ovadia, 2012, PloS one.

Mitochondrial DNA associations with East Asian metabolic syndrome.

Larry N. Singh, D. Wallace, D. Mishmar, 2018, Biochimica et biophysica acta. Bioenergetics.

Parental diabetes status reveals association of mitochondrial DNA haplogroup J1 with type 2 diabetes

B. Glaser, I. Harman-boehm, D. Mishmar, 2009, BMC Medical Genetics.

The First Chameleon Transcriptome: Comparative Genomic Analysis of the OXPHOS System Reveals Loss of COX8 in Iguanian Lizards

A. Bouskila, D. Mishmar, Dan Bar-Yaacov, 2013, Genome biology and evolution.

Human mitochondrial RNA modifications associate with tissue-specific changes in gene expression, and are affected by sunlight and UV exposure

D. Mishmar, A. Eran, T. Cohen, 2022, European Journal of Human Genetics.

Gene Expression Patterns of Oxidative Phosphorylation Complex I Subunits Are Organized in Clusters

D. Mishmar, O. Ovadia, S. Dadon, 2010, PloS one.

Disease-causing mutations in subunits of OXPHOS complex I affect certain physical interactions

M. Schuldiner, D. Mishmar, Gilad Barshad, 2019, Scientific Reports.

Vertebrates show coordinated elevated expression of mitochondrial and nuclear genes after birth: a conserved metabolic switch

D. Mishmar, H. Medini, 2024, bioRxiv.