Y. Halperin

Transcription factor and microRNA motif discovery: the Amadeus platform and a compendium of metazoan target sets.

R. Shamir, Chaim Linhart, Y. Halperin, 2008, Genome research.

Functional genomic delineation of TLR-induced transcriptional networks

Ron Shamir, Ran Elkon, Chaim Linhart, 2007, BMC Genomics.

Allegro: Analyzing expression and sequence in concert to discover regulatory programs

Ron Shamir, Chaim Linhart, Igor Ulitsky, 2009, Nucleic acids research.

A probabilistic model for the evolution of promoters

R. Elkon, Michal Ziv-Ukelson, Chaim Linhart, 2007 .

Shamir platform and a compendium of metazoan target sets Transcription factor and microRNA motif discovery : The Amadeus

R. Shamir, Chaim Linhart, Y. Halperin, 2008 .

A novel candidate cis-regulatory motif pair in the promoters of germline and oogenesis genes in C. elegans.

R. Shamir, Chaim Linhart, Y. Halperin, 2012, Genome research.