S. D. De Keersmaecker

发表

Method DISTILLER : a data integration framework to reveal condition dependency of complex regulons in Escherichia coli

J. Collado-Vides, T. D. Bie, B. De Moor, 2009 .

Supporting Probiotic Action Genes and Molecules of Lactobacilli Genes and Molecules of Lactobacilli Supporting Probiotic Action Mechanisms of Health-promoting Effects of Lactobacilli: Probiotic Factors..747

S. D. De Keersmaecker, J. Vanderleyden, S. Lebeer, 2022 .

Comparative genomic analysis of Lactobacillus rhamnosus GG reveals pili containing a human- mucus binding protein

P. Auvinen, W. D. de Vos, L. Paulin, 2009, Proceedings of the National Academy of Sciences.

Integration of 'omics' data: does it lead to new insights into host-microbe interactions?

Kathleen Marchal, Jos Vanderleyden, Sigrid C J De Keersmaecker, 2010, Future microbiology.

Statistical framework for detection of genetically modified organisms based on Next Generation Sequencing.

D. Deforce, S. D. De Keersmaecker, T. Ruttink, 2016, Food chemistry.

In silico identification and experimental validation of PmrAB targets in Salmonella typhimurium by regulatory motif detection

B. De Moor, G. Thijs, K. Marchal, 2004, Genome Biology.

Microarray Analysis and Motif Detection Reveal New Targets of the Salmonella enterica Serovar Typhimurium HilA Regulatory Protein, Including hilA Itself

K. Marchal, K. Engelen, S. D. De Keersmaecker, 2005, Journal of bacteriology.

Genome-specific higher-order background models to improve motif detection.

B. De Moor, G. Thijs, K. Marchal, 2003, Trends in microbiology.

Development of a real-time PCR method for the genoserotyping of Salmonella Paratyphi B variant Java

K. Marchal, S. D. De Keersmaecker, N. Roosens, 2019, Applied Microbiology and Biotechnology.

Urinary CC16, a potential indicator of lung integrity and inflammation, increases in children after short-term exposure to PM2.5/PM10 and is driven by the CC16 38 GG genotype.

N. Saenen, T. Nawrot, S. D. De Keersmaecker, 2022, Environmental research.

How to Deal with the Upcoming Challenges in GMO Detection in Food and Feed

S. D. De Keersmaecker, N. Roosens, S. Broeders, 2012, Journal of biomedicine & biotechnology.

Development and performance assessment of a qualitative SYBR® green real-time PCR assay for the detection of Aspergillus versicolor in indoor air

S. D. De Keersmaecker, N. Roosens, F. Bureau, 2015, Applied Microbiology and Biotechnology.

Exopolysaccharides of Lactobacillus rhamnosus GG form a protective shield against innate immune factors in the intestine

S. D. De Keersmaecker, S. Lebeer, J. Vanderleyden, 2011, Microbial biotechnology.

Identification of a Gene Cluster for the Biosynthesis of a Long, Galactose-Rich Exopolysaccharide in Lactobacillus rhamnosus GG and Functional Analysis of the Priming Glycosyltransferase

S. D. De Keersmaecker, G. Schoofs, Y. Dufrêne, 2009, Applied and Environmental Microbiology.

A Practical Method to Implement Strain-Level Metagenomics-Based Foodborne Outbreak Investigation and Source Tracking in Routine

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2020, Microorganisms.

Detection and discrimination of five E. coli pathotypes using a combinatory SYBR® Green qPCR screening system

S. D. De Keersmaecker, N. Roosens, K. Dierick, 2018, Applied Microbiology and Biotechnology.

A simple structured model for growth and AI-2 mediated cell-cell communication of Salmonella Typhimurium

J. V. Van Impe, S. D. De Keersmaecker, K. Bernaerts, 2008, 2008 16th Mediterranean Conference on Control and Automation.

Functional Analysis of luxS in the Probiotic Strain Lactobacillus rhamnosus GG Reveals a Central Metabolic Role Important for Growth and Biofilm Formation

K. Marchal, S. D. De Keersmaecker, J. Vanderleyden, 2006, Journal of bacteriology.

Structure-activity relationship of 4(5)-aryl-2-amino-1H-imidazoles, N1-substituted 2-aminoimidazoles and imidazo[1,2-a]pyrimidinium salts as inhibitors of biofilm formation by Salmonella typhimurium and Pseudomonas aeruginosa.

S. D. De Keersmaecker, A. De Weerdt, D. D. De Vos, 2011, Journal of medicinal chemistry.

Discrimination of three genetically close Aspergillus species by using high resolution melting analysis applied to indoor air as case study

S. D. De Keersmaecker, N. Roosens, F. Bureau, 2017, BMC Microbiology.

Characterization of MabA, a modulator of Lactobacillus rhamnosus GG adhesion and biofilm formation.

S. D. De Keersmaecker, S. Lebeer, S. Tynkkynen, 2010, FEMS immunology and medical microbiology.

Genomic epidemiology of emerging ESBL-producing Salmonella Kentucky blaCTX-M-14b in Europe

T. Dallman, S. D. De Keersmaecker, E. Franz, 2020, Emerging microbes & infections.

Combining short and long read sequencing to characterize antimicrobial resistance genes on plasmids applied to an unauthorized genetically modified Bacillus

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2020, Scientific Reports.

NGS for (Hemato-) Oncology in Belgium: Evaluation of Laboratory Performance and Feasibility of a National External Quality Assessment Program

K. Vanneste, S. D. De Keersmaecker, A. Antoniou, 2020, Cancers.

Impact of Environmental and Genetic Factors on Biofilm Formation by the Probiotic Strain Lactobacillus rhamnosus GG

S. D. De Keersmaecker, S. Lebeer, J. Vanderleyden, 2007, Applied and Environmental Microbiology.

Use of next generation sequencing data to develop a qPCR method for specific detection of EU-unauthorized genetically modified Bacillus subtilis overproducing riboflavin

S. D. De Keersmaecker, N. Roosens, E. Barbau-Piednoir, 2015, BMC Biotechnology.

Selection of a Noninvasive Source of Human DNA Envisaging Genotyping Assays in Epidemiological Studies: Urine or Saliva?

S. D. De Keersmaecker, N. Roosens, A. Bernard, 2020, Journal of biomolecular techniques : JBT.

The major secreted protein Msp1/p75 is O-glycosylated in Lactobacillus rhamnosus GG

W. D. de Vos, P. Agostinis, S. D. De Keersmaecker, 2012, Microbial Cell Factories.

Comparative study of seven commercial kits for human DNA extraction from urine samples suitable for DNA biomarker-based public health studies.

S. D. De Keersmaecker, N. Roosens, A. Bernard, 2014, Journal of Biomolecular Techniques.

Assessment of the Feasibility of a Future Integrated Larger-Scale Epidemiological Study to Evaluate Health Risks of Air Pollution Episodes in Children

N. Saenen, T. Nawrot, S. D. De Keersmaecker, 2022, International journal of environmental research and public health.

Strain-Level Metagenomic Data Analysis of Enriched In Vitro and In Silico Spiked Food Samples: Paving the Way towards a Culture-Free Foodborne Outbreak Investigation Using STEC as a Case Study

K. Marchal, S. D. De Keersmaecker, N. Roosens, 2020, International journal of molecular sciences.

Whole-Genome Sequence Approach and Phylogenomic Stratification Improve the Association Analysis of Mutations With Patient Data in Influenza Surveillance

K. Vanneste, S. D. De Keersmaecker, X. Saelens, 2022, Frontiers in Microbiology.

Isolation of Drug-Resistant Gallibacterium anatis from Calves with Unresponsive Bronchopneumonia, Belgium

K. Vanneste, S. D. De Keersmaecker, F. Boyen, 2020, Emerging infectious diseases.

Functional Analysis of Lactobacillus rhamnosus GG Pili in Relation to Adhesion and Immunomodulatory Interactions with Intestinal Epithelial Cells

W. D. de Vos, S. D. De Keersmaecker, I. von Ossowski, 2011, Applied and Environmental Microbiology.

Impact of lipoteichoic acid modification on the performance of the probiotic Lactobacillus rhamnosus GG in experimental colitis

P. Rutgeerts, S. Vermeire, G. V. Assche, 2010, Clinical and experimental immunology.

First detection of a plasmid located carbapenem resistant blaVIM-1 gene in E. coli isolated from meat products at retail in Belgium in 2015.

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2020, International journal of food microbiology.

First detection of a plasmid-encoded New-Delhi metallo-beta-lactamase-1 (NDM-1) producing Acinetobacter baumannii using whole genome sequencing, isolated in a clinical setting in Benin

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2020, Annals of clinical microbiology and antimicrobials.

Genome Sequence of the Salmonella enterica subsp. enterica Serovar Namur Strain 05-2929, Lacking the Salmonella Atypical Fimbrial Operon

S. D. De Keersmaecker, N. Roosens, S. Bertrand, 2014, Genome Announcements.

Large diversity of linezolid-resistant isolates discovered in food-producing animals through linezolid selective monitoring in Belgium in 2019

K. Vanneste, S. D. De Keersmaecker, P. Wattiau, 2021, The Journal of antimicrobial chemotherapy.

A general approach to identify low-frequency variants within influenza samples collected during routine surveillance

K. Vanneste, S. D. De Keersmaecker, X. Saelens, 2022, Microbial genomics.

Development of a Luminex xTAG® assay for cost-effective multiplex detection of β-lactamases in Gram-negative bacteria.

S. D. De Keersmaecker, K. Dierick, W. Mattheus, 2016, Journal of Antimicrobial Chemotherapy.

Shifting national surveillance of Shigella infections toward geno‐serotyping by the development of a tailored Luminex assay and NGS workflow

K. Vanneste, S. D. De Keersmaecker, N. Roosens, 2019, MicrobiologyOpen.

Strong antimicrobial activity of Lactobacillus rhamnosus GG against Salmonella typhimurium is due to accumulation of lactic acid.

K. Marchal, S. D. De Keersmaecker, J. Vanderleyden, 2006, FEMS microbiology letters.

Concise and diversity-oriented route toward polysubstituted 2-aminoimidazole alkaloids and their analogues.

S. D. De Keersmaecker, H. Steenackers, E. V. Van der Eycken, 2010, Angewandte Chemie.

Targeting the 16S rRNA Gene for Bacterial Identification in Complex Mixed Samples: Comparative Evaluation of Second (Illumina) and Third (Oxford Nanopore Technologies) Generation Sequencing Technologies

K. Vanneste, S. D. De Keersmaecker, N. Roosens, 2019, International journal of molecular sciences.

Identification and characterization of starter lactic acid bacteria and probiotics from Columbian dairy products

S. D. De Keersmaecker, S. Lebeer, J. Vanderleyden, 2007, Journal of applied microbiology.

Screening strategy targeting the presence of food enzyme-producing fungi in food enzyme preparations

D. Deforce, K. Vanneste, S. D. De Keersmaecker, 2020 .

Impact of luxS and Suppressor Mutations on the Gastrointestinal Transit of Lactobacillus rhamnosus GG

S. D. De Keersmaecker, J. Ceuppens, S. Lebeer, 2008, Applied and Environmental Microbiology.

Brominated Furanones Inhibit Biofilm Formation by Salmonella enterica Serovar Typhimurium

Kathleen Marchal, Hui Zhao, Jeremy Levin, 2008, Applied and Environmental Microbiology.

A multiplex oligonucleotide ligation-PCR as a complementary tool for subtyping of Salmonella Typhimurium

K. Marchal, S. D. De Keersmaecker, N. Roosens, 2015, Applied Microbiology and Biotechnology.

MLVA as a Tool for Public Health Surveillance of Human Salmonella Typhimurium: Prospective Study in Belgium and Evaluation of MLVA Loci Stability

K. Marchal, S. D. De Keersmaecker, N. Roosens, 2013, PloS one.

Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2020, Scientific Reports.

MinION sequencing technology to characterize unauthorized GM petunia plants circulating on the European Union market

S. D. De Keersmaecker, J. Ovesná, Marie-Alice Fraiture, 2019, Scientific Reports.

Detailed Evaluation of Data Analysis Tools for Subtyping of Bacterial Isolates Based on Whole Genome Sequencing: Neisseria meningitidis as a Proof of Concept

Kathleen Marchal, Assia Saltykova, Wesley Mattheus, 2019, Front. Microbiol..

Deepening of In Silico Evaluation of SARS-CoV-2 Detection RT-qPCR Assays in the Context of New Variants

K. Vanneste, S. D. De Keersmaecker, P. Herman, 2021, Genes.

Experimental approaches to identify small RNAs and their diverse roles in bacteria – what we have learnt in one decade of MicA research

S. D. De Keersmaecker, J. Vanderleyden, S. Van Puyvelde, 2015, MicrobiologyOpen.

Functional Analysis of d-Alanylation of Lipoteichoic Acid in the Probiotic Strain Lactobacillus rhamnosus GG

S. D. De Keersmaecker, J. Vanderleyden, C. Grangette, 2007, Applied and Environmental Microbiology.

FabR regulates Salmonella biofilm formation via its direct target FabB

K. Marchal, S. D. De Keersmaecker, I. Thijs, 2016, BMC Genomics.

The genetic structure of the Belgian population

E. Goetghebeur, J. Vermeesch, S. Demarest, 2018, Human Genomics.

Application of a strain-level shotgun metagenomics approach on food samples: resolution of the source of a Salmonella food-borne outbreak

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2021, Microbial genomics.

Evaluation of the added value of viral genomic information for predicting severity of influenza infection

K. Vanneste, S. D. De Keersmaecker, H. Van Oyen, 2021, BMC Infectious Diseases.

Adherence factors of Lactobacillus in the human gastrointestinal tract.

S. D. De Keersmaecker, J. Vanderleyden, M. Vélez, 2007, FEMS microbiology letters.

Lessons from probiotic-host interaction studies in murine models of experimental colitis.

S. D. De Keersmaecker, S. Lebeer, J. Vanderleyden, 2011, Molecular nutrition & food research.

Integration of omics data: how well does it work for bacteria?

Kathleen Marchal, Jos Vanderleyden, Sigrid C J De Keersmaecker, 2006, Molecular microbiology.

Whole Genome Sequencing Provides an Added Value to the Investigation of Staphylococcal Food Poisoning Outbreaks

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2021, Frontiers in Microbiology.

Using a combination of short- and long-read sequencing to investigate the diversity in plasmid- and chromosomally encoded extended-spectrum beta-lactamases (ESBLs) in clinical Shigella and Salmonella isolates in Belgium

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2023, Microbial genomics.

Listeria monocytogenes isolates from Cornu aspersum snails: Whole genome-based characterization and host-pathogen interactions in a snail infection model.

S. D. De Keersmaecker, A. Malousi, N. Roosens, 2022, Fish & shellfish immunology.

Metagenomic Characterization of Multiple Genetically Modified Bacillus Contaminations in Commercial Microbial Fermentation Products

K. Vanneste, S. D. De Keersmaecker, Marie-Alice Fraiture, 2022, Life.

A Bioinformatics Whole-Genome Sequencing Workflow for Clinical Mycobacterium tuberculosis Complex Isolate Analysis, Validated Using a Reference Collection Extensively Characterized with Conventional Methods and In Silico Approaches

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2021, Journal of Clinical Microbiology.

Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2021, Microbial Genomics.

Validation of a Bioinformatics Workflow for Routine Analysis of Whole-Genome Sequencing Data and Related Challenges for Pathogen Typing in a European National Reference Center: Neisseria meningitidis as a Proof-of-Concept

Kevin Vanneste, Sophie Bertrand, Pieter-Jan Ceyssens, 2019, Front. Microbiol..

Phylogenomic Investigation of Increasing Fluoroquinolone Resistance among Belgian Cases of Shigellosis between 2013 and 2018 Indicates Both Travel-Related Imports and Domestic Circulation

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2021, Microorganisms.

Development of an NGS-Based Workflow for Improved Monitoring of Circulating Plasmids in Support of Risk Assessment of Antimicrobial Resistance Gene Dissemination

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2020, Antibiotics.

Retrospective evaluation of routine whole genome sequencing of Mycobacterium tuberculosis at the Belgian National Reference Center, 2019

K. Vanneste, S. D. De Keersmaecker, N. Roosens, 2021, Acta clinica Belgica.

Whole-genome-based phylogenomic analysis of the Belgian 2016–2017 influenza A(H3N2) outbreak season allows improved surveillance

K. Vanneste, S. D. De Keersmaecker, X. Saelens, 2021, Microbial genomics.

Towards Real-Time and Affordable Strain-Level Metagenomics-Based Foodborne Outbreak Investigations Using Oxford Nanopore Sequencing Technologies

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2021, Frontiers in Microbiology.

Detection, localization, and conformational analysis of single polysaccharide molecules on live bacteria.

S. D. De Keersmaecker, D. Alsteens, Y. Dufrêne, 2008, ACS nano.

Genetic and Biochemical Characterization of the Cell Wall Hydrolase Activity of the Major Secreted Protein of Lactobacillus rhamnosus GG

W. D. de Vos, S. D. De Keersmaecker, G. Schoofs, 2012, PloS one.

Functional Characterization of a Mucus-Specific LPXTG Surface Adhesin from Probiotic Lactobacillus rhamnosus GG

W. D. de Vos, S. D. De Keersmaecker, I. von Ossowski, 2011, Applied and Environmental Microbiology.

2D proteome analysis initiates new Insights on the Salmonella Typhimurium LuxS protein

S. D. De Keersmaecker, G. Schoofs, J. Vanderleyden, 2009, BMC Microbiology.

A GFP promoter fusion library for the study of Salmonella biofilm formation and the mode of action of biofilm inhibitors

S. D. De Keersmaecker, A. De Weerdt, J. Vanderleyden, 2014, Biofouling.

The small regulatory RNA molecule MicA is involved in Salmonella enterica serovar Typhimurium biofilm formation

K. Marchal, S. D. De Keersmaecker, J. Vanderleyden, 2010, BMC Microbiology.

Let LuxS speak up in AI-2 signaling.

S. D. De Keersmaecker, J. Vanderleyden, K. Sonck, 2006, Trends in microbiology.

Evaluation of WGS performance for bacterial pathogen characterization with the Illumina technology optimized for time-critical situations

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2021, Microbial genomics.

Structure-activity relationship of brominated 3-alkyl-5-methylene-2(5H)-furanones and alkylmaleic anhydrides as inhibitors of Salmonella biofilm formation and quorum sensing regulated bioluminescence in Vibrio harveyi.

S. D. De Keersmaecker, A. De Weerdt, J. Vanderleyden, 2010, Bioorganic & medicinal chemistry.

Population Analysis of O26 Shiga Toxin-Producing Escherichia coli Causing Hemolytic Uremic Syndrome in Italy, 1989–2020, Through Whole Genome Sequencing

K. Vanneste, S. D. De Keersmaecker, F. Gigliucci, 2022, Frontiers in Cellular and Infection Microbiology.

Whole Genome Sequence Analysis of Salmonella Enteritidis PT4 Outbreaks from a National Reference Laboratory’s Viewpoint

K. Marchal, S. D. De Keersmaecker, N. Roosens, 2015, PLoS currents.

The proteome of Salmonella Typhimurium grown under in vivo‐mimicking conditions

S. D. De Keersmaecker, G. Schoofs, J. Vanderleyden, 2009, Proteomics.

A novel genotoxin-specific qPCR array based on the metabolically competent human HepaRG™ cell line as a rapid and reliable tool for improved in vitro hazard assessment

Dimiter Milushev, Vera Rogiers, Luc Verschaeve, 2018, Archives of Toxicology.

Case Report: Multidrug Resistant Raoultella ornithinolytica in a Septicemic Calf

K. Vanneste, S. D. De Keersmaecker, F. Boyen, 2021, Frontiers in Veterinary Science.

Development of a multiplex mass spectrometry method for simultaneous quantification of urinary proteins related to respiratory health

S. D. De Keersmaecker, A. Bernard, N. Roosens, 2021, Scientific Reports.

Gender‐dependent association between exhaled nitric oxide and the CC16 38AA genotype in young school children

S. D. De Keersmaecker, N. Roosens, A. Bernard, 2020, Immunity, inflammation and disease.

Lipoteichoic acid is an important microbe-associated molecular pattern of Lactobacillus rhamnosus GG

S. D. De Keersmaecker, J. Vanderleyden, M. Dusselier, 2012, Microbial Cell Factories.

Noninvasive integrative approach applied to children in the context of recent air pollution exposure demonstrates association between fractional exhaled nitric oxide (FeNO) and urinary CC16.

T. Nawrot, S. D. De Keersmaecker, J. Vercauteren, 2022, Environmental research.

Adaptation factors of the probiotic Lactobacillus rhamnosus GG.

S. D. De Keersmaecker, S. Lebeer, J. Vanderleyden, 2010, Beneficial microbes.

Synthesis of N-Acyl Homoserine Lactone Analogues Reveals Strong Activators of SdiA, the Salmonella enterica Serovar Typhimurium LuxR Homologue

S. D. De Keersmaecker, J. Vanderleyden, D. D. De Vos, 2006, Applied and Environmental Microbiology.

Delineation of the Salmonella enterica Serovar Typhimurium HilA Regulon through Genome-Wide Location and Transcript Analysis

Kathleen Marchal, Hui Zhao, Kristof Engelen, 2007, Journal of bacteriology.

A genoserotyping system for a fast and objective identification of Salmonella serotypes commonly isolated from poultry and pork food sectors in Belgium.

K. Marchal, S. D. De Keersmaecker, N. Roosens, 2020, Food microbiology.

Metagenomics to Detect and Characterize Viruses in Food Samples at Genome Level? Lessons Learnt from a Norovirus Study

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2022, Foods.

Gene expression analysis of monospecies Salmonella typhimurium biofilms using differential fluorescence induction.

S. D. De Keersmaecker, G. Schoofs, J. Vanderleyden, 2011, Journal of microbiological methods.

Influence of genetic background on transformation and expression of Green Fluorescent Protein in Actinobacillus actinomycetemcomitans.

W. Teughels, I. Sliepen, M. Quirynen, 2005, Oral microbiology and immunology.

Molecular Subtyping of Salmonella Typhimurium with Multiplex Oligonucleotide Ligation-PCR (MOL-PCR).

K. Marchal, S. D. De Keersmaecker, N. Roosens, 2017, Methods in molecular biology.

Targeted High-Throughput Sequencing Enables the Detection of Single Nucleotide Variations in CRISPR/Cas9 Gene-Edited Organisms

K. Vanneste, S. D. De Keersmaecker, Anne-Cécile Meunier, 2023, Foods.

First detection of a plasmid-encoded New-Delhi metallo-beta-lactamase-1 (NDM-1) producing Acinetobacter baumannii using whole genome sequencing, isolated in a clinical setting in Benin

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2021, Annals of Clinical Microbiology and Antimicrobials.

Structure-activity relationship of 2-hydroxy-2-aryl-2,3-dihydro-imidazo[1,2-a]pyrimidinium salts and 2N-substituted 4(5)-aryl-2-amino-1H-imidazoles as inhibitors of biofilm formation by Salmonella Typhimurium and Pseudomonas aeruginosa.

S. D. De Keersmaecker, D. D. De Vos, H. Steenackers, 2011, Bioorganic & medicinal chemistry.

[Effects of the addition of iso-acids to feed on ruminal fermentation, in sacco degradation of dry matter and the concentration of several blood parameters in cows].

S. D. De Keersmaecker, J. Andries, B. Cottyn, 1990, Reproduction, nutrition, development.

Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5],12:i:-

Kathleen Marchal, Sophie Bertrand, Assia Saltykova, 2018, PLoS ONE.

Nanopore sequencing technology: a new route for the fast detection of unauthorized GMO

D. Deforce, K. Vanneste, S. D. De Keersmaecker, 2018, Scientific Reports.

Detection and identification of authorized and unauthorized GMOs using high-throughput sequencing with the support of a sequence-based GMO database

K. Vanneste, S. D. De Keersmaecker, Marie-Alice Fraiture, 2022, Food chemistry. Molecular sciences.

Identification of an unauthorized genetically modified bacteria in food enzyme through whole-genome sequencing

K. Vanneste, S. D. De Keersmaecker, Marie-Alice Fraiture, 2020, Scientific Reports.

Strategy to Develop and Evaluate a Multiplex RT-ddPCR in Response to SARS-CoV-2 Genomic Evolution

A. Cay, S. D. De Keersmaecker, Marie-Alice Fraiture, 2021, Current issues in molecular biology.

Strategy and Performance Evaluation of Low-Frequency Variant Calling for SARS-CoV-2 Using Targeted Deep Illumina Sequencing

K. Vanneste, S. D. De Keersmaecker, X. Saelens, 2021, Frontiers in Microbiology.

Strategy and performance evaluation of low-frequency variant calling for SARS-CoV-2 in wastewater using targeted deep Illumina sequencing

K. Vanneste, S. D. De Keersmaecker, X. Saelens, 2021, medRxiv.

Nurturing scientific mutualism: A report from the ‘Young Microbiologists Mini‐Symposium on microbe signalling, organisation and pathogenesis’

S. D. De Keersmaecker, R. Ryan, T. Romeo, 2009, Molecular microbiology.

Optimized MOL‐PCR for Characterization of Microbial Pathogens

K. Marchal, S. D. De Keersmaecker, N. Roosens, 2016, Current protocols in cytometry.

Guidelines for Optimisation of a Multiplex Oligonucleotide Ligation-PCR for Characterisation of Microbial Pathogens in a Microsphere Suspension Array

Kathleen Marchal, Sophie Bertrand, Sigrid C J De Keersmaecker, 2015, BioMed research international.

Flow Cytometric Testing of Green Fluorescent Protein-Tagged Lactobacillus rhamnosus GG for Response to Defensins

K. Braeken, S. D. De Keersmaecker, S. Lebeer, 2006, Applied and Environmental Microbiology.

Perceived utility and feasibility of pathogen genomics for public health practice: a survey among public health professionals working in the field of infectious diseases, Belgium, 2019

H. Oyen, S. D. De Keersmaecker, M. Struelens, 2020, BMC Public Health.

Chemical Synthesis of (S)-4,5-Dihydroxy-2,3-pentanedione, a Bacterial Signal Molecule Precursor, and Validation of Its Activity in Salmonella typhimurium*

Kathleen Marchal, Jos Vanderleyden, Sigrid C J De Keersmaecker, 2005, Journal of Biological Chemistry.

Epidemiology of the Staphylococcus aureus CA-MRSA USA300 in Belgium

S. D. De Keersmaecker, D. Martiny, M. Argudín, 2021, European Journal of Clinical Microbiology & Infectious Diseases.

Whole-Genome Sequencing-Based Antimicrobial Resistance Characterization and Phylogenomic Investigation of 19 Multidrug-Resistant and Extended-Spectrum Beta-Lactamase-Positive Escherichia coli Strains Collected From Hospital Patients in Benin in 2019

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2021, Frontiers in Microbiology.

The Benefits of Whole Genome Sequencing for Foodborne Outbreak Investigation from the Perspective of a National Reference Laboratory in a Smaller Country

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2020, Foods.

A multiplex oligonucleotide ligation-PCR method for the genoserotyping of common Salmonella using a liquid bead suspension assay.

K. Marchal, S. D. De Keersmaecker, N. Roosens, 2020, Food microbiology.

Use of Whole Genome Sequencing Data for a First in Silico Specificity Evaluation of the RT-qPCR Assays Used for SARS-CoV-2 Detection

K. Vanneste, S. D. De Keersmaecker, P. Herman, 2020, International journal of molecular sciences.

FabR regulates Salmonella biofilm formation via its direct target FabB

K. Marchal, S. D. De Keersmaecker, I. Thijs, 2016, BMC Genomics.

Whole-Genome Sequencing-Based Screening of MRSA in Patients and Healthcare Workers in Public Hospitals in Benin

K. Vanneste, S. D. De Keersmaecker, N. Roosens, 2023, Microorganisms.

DISTILLER: a data integration framework to reveal condition dependency of complex regulons in Escherichia coli

J. Collado-Vides, B. De Moor, K. Marchal, 2009, Genome Biology.

Detection of Plasmid-Mediated Colistin Resistance, mcr-1 and mcr-2 Genes, in Salmonella spp. Isolated from Food at Retail in Belgium from 2012 to 2015.

K. Vanneste, S. D. De Keersmaecker, N. Roosens, 2017, Foodborne pathogens and disease.

Exploiting the Advantages of Molecular Tools for the Monitoring of Fungal Indoor Air Contamination: First Detection of Exophiala jeanselmei in Indoor Air of Air-Conditioned Offices

S. D. De Keersmaecker, N. Roosens, F. Bureau, 2019, Microorganisms.

Comparison of 6 DNA extraction methods for isolation of high yield of high molecular weight DNA suitable for shotgun metagenomics Nanopore sequencing to detect bacteria

K. Vanneste, S. D. De Keersmaecker, N. Roosens, 2023, BMC Genomics.

Characterization of Genetically Modified Microorganisms Using Short- and Long-Read Whole-Genome Sequencing Reveals Contaminations of Related Origin in Multiple Commercial Food Enzyme Products

K. Vanneste, S. D. De Keersmaecker, Marie-Alice Fraiture, 2021, Foods.

Genome Sequence of EU-Unauthorized Genetically Modified Bacillus subtilis Strain 2014-3557 Overproducing Riboflavin, Isolated from a Vitamin B2 80% Feed Additive

W. Pirovano, S. D. De Keersmaecker, N. Roosens, 2015, Genome Announcements.

Comparative study of seven commercial kits for human DNA extraction from urine samples suitable for DNA biomarker-based public health studies.

S. D. De Keersmaecker, N. Roosens, A. Bernard, 2014, Journal of biomolecular techniques : JBT.

Identification and characterization of 4-[4-(3-phenyl-2-propen-1-yl)-1-piperazinyl]-5H-pyrimido[5,4-b]indole derivatives as Salmonella biofilm inhibitors.

A. Marchand, S. D. De Keersmaecker, J. Vanderleyden, 2012, FEMS immunology and medical microbiology.

S. D. De Keersmaecker, A. De Weerdt, J. Vanderleyden, 2010, Bioorganic & medicinal chemistry.

Genes and Molecules of Lactobacilli Supporting Probiotic Action

S. D. De Keersmaecker, J. Vanderleyden, S. Lebeer, 2008, Microbiology and Molecular Biology Reviews.

Small molecules for interference with cell-cell-communication systems in Gram-negative bacteria.

S. D. De Keersmaecker, J. Vanderleyden, D. D. De Vos, 2008, Current Medicinal Chemistry.

A shotgun metagenomics approach to detect and characterize unauthorized genetically modified microorganisms in microbial fermentation products

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2021, Food chemistry. Molecular sciences.

Retrospective surveillance of viable Bacillus cereus group contaminations in commercial food and feed vitamin B2 products sold on the Belgian market using whole-genome sequencing

K. Vanneste, S. D. De Keersmaecker, B. Jacobs, 2023, Frontiers in Microbiology.

Brominated Furanones Inhibit Biofilm Formation by Salmonella enterica Serovar Typhimurium

K. Marchal, S. D. De Keersmaecker, J. Vanderleyden, 2008, Applied and Environmental Microbiology.

Integration of omics data: how well does it work for bacteria?

K. Marchal, S. D. De Keersmaecker, I. Thijs, 2006, Molecular microbiology.

Impact of luxS and Suppressor Mutations on the Gastrointestinal Transit of Lactobacillus rhamnosus GG

S. D. De Keersmaecker, J. Ceuppens, S. Lebeer, 2008, Applied and Environmental Microbiology.

Mechanisms of probiotic-host interaction with IBD as a case study: a role for exopolysaccharides?

P. Rutgeerts, G. Van Assche, S. D. De Keersmaecker, 2007, Communications in agricultural and applied biological sciences.

High-resolution melting PCR analysis for rapid genotyping of Burkholderia mallei.

R. Grunow, S. D. De Keersmaecker, P. Wattiau, 2018, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

Towards facilitated interpretation of shotgun metagenomics long-read sequencing data analyzed with KMA for the detection of bacterial pathogens and their antimicrobial resistance genes

K. Vanneste, S. D. De Keersmaecker, M. AbuOun, 2024, Frontiers in microbiology.

Transforming Shiga toxin-producing Escherichia coli surveillance through whole genome sequencing in food safety practices

K. Marchal, K. Vanneste, S. D. De Keersmaecker, 2023, Frontiers in microbiology.

Development of a reverse transcriptase digital droplet polymerase chain reaction‐based approach for SARS‐CoV‐2 variant surveillance in wastewater

S. D. De Keersmaecker, Marie-Alice Fraiture, N. Roosens, 2024, Water environment research : a research publication of the Water Environment Federation.

The potential of including the microbiome as biomarker in population-based health studies: methods and benefits

S. D. De Keersmaecker, N. Roosens, F. Buytaers, 2024, Frontiers in public health.