H. Wiley

发表

Network Analysis of Epidermal Growth Factor Signaling Using Integrated Genomic, Proteomic and Phosphorylation Data

Richard D. Smith, K. Waters, Tao Liu, 2012, PloS one.

Conservation of protein abundance patterns reveals the regulatory architecture of the EGFR-MAPK pathway

Peter K. Sorger, Jason E. McDermott, Carrie D. Nicora, 2016, Science Signaling.

A general system for studying protein-protein interactions in Gram-negative bacteria.

Yi-Song Wang, S. Kennel, G. Hurst, 2008, Journal of proteome research.

Predicting Species-Resolved Macronutrient Acquisition during Succession in a Model Phototrophic Biofilm Using an Integrated ‘Omics Approach

Stephen R. Lindemann, Margaret F. Romine, Ronald C. Taylor, 2017, Front. Microbiol..

Coregulation of Terpenoid Pathway Genes and Prediction of Isoprene Production in Bacillus subtilis Using Transcriptomics

Ronald C. Taylor, H. Wiley, L. M. Markillie, 2013, PloS one.

Facile carrier-assisted targeted mass spectrometric approach for proteomic analysis of low numbers of mammalian cells

Thomas L. Fillmore, Anil K. Shukla, Richard D. Smith, 2018, Communications Biology.

Inference of interactions in cyanobacterial–heterotrophic co-cultures via transcriptome sequencing

Hans C. Bernstein, Grigoriy E. Pinchuk, A. Konopka, 2014, The ISME Journal.

Transcriptomic and proteomic signatures of stemness and differentiation in the colon crypt

Amber N. Habowski, A. Ganesan, R. Edwards, 2020, Communications Biology.

Steady State Analysis of Integrated Proteomics and Transcriptomics Data Shows Changes in Translational Efficiency a Dominant Regulatory Mechanism in the Environmental Response of Bacteria

Ronald C. Taylor, H. Wiley, L. M. Markillie, 2013 .

Changes in translational efficiency is a dominant regulatory mechanism in the environmental response of bacteria.

Ronald C. Taylor, Lye Meng Markillie, Ronald C Taylor, 2013, Integrative biology : quantitative biosciences from nano to macro.

SBbadger: biochemical reaction networks with definable degree distributions

Michael A. Kochen, H. Sauro, H. Wiley, 2022, Bioinform..

BIOINFORMATICS Characterization and improvement of RNA-Seq precision in quantitative transcript expression proﬁling

David P. Kreil, Paweł P. Łabaj, H. Wiley, 2011 .

Improving RNA-Seq Precision with MapAl

H. Steven Wiley, David P. Kreil, Paweł P. Łabaj, 2012, Front. Gene..

Characterization and improvement of RNA-Seq precision in quantitative transcript expression profiling

H. Steven Wiley, Pawel P. Labaj, David P. Kreil, 2011, Bioinform..

Targeted Quantification of Protein Phosphorylation and Its Contributions towards Mathematical Modeling of Signaling Pathways

W. Qian, H. Wiley, Tujin Shi, 2023, Molecules.

Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models

Tao Liu, Simon Rogers, Mark A. Girolami, 2008, Bioinform..

Sporadic ERK pulses drive non-genetic resistance in drug-adapted BRAFV600E melanoma cells

Peter K. Sorger, Douglas A. Lauffenburger, Jia-Yun Chen, 2019, bioRxiv.

Facile One-Pot Nanoproteomics for Label-Free Proteome Profiling of 50-1000 Mammalian Cells.

Richard D. Smith, M. Waterman, Tao Liu, 2021, Journal of proteome research.

Carrier-Assisted Single-Tube Processing Approach for Targeted Proteomics Analysis of Low Numbers of Mammalian Cells.

Richard D. Smith, W. Qian, Tao Liu, 2018, Analytical chemistry.

Facile carrier-assisted targeted mass spectrometric approach for proteomic analysis of low numbers of mammalian cells

Anil K. Shukla, Richard D. Smith, W. Qian, 2018, Communications Biology.

Science Signaling Podcast for 12 July 2016: Adaptor proteins limit signaling

H. Wiley, A. VanHook, 2016, Science Signaling.

Sensitive targeted quantification of ERK phosphorylation dynamics and stoichiometry in human cells without affinity enrichment.

Rui Zhao, Tao Liu, Marina A Gritsenko, 2015, Analytical chemistry.

Transcriptomic and proteomic signatures of stemness and differentiation in the colon crypt

Amber N. Habowski, A. Ganesan, M. Waterman, 2020, Communications Biology.

Targeted Quantification of Phosphorylation Dynamics in the Context of EGFR-MAPK Pathway.

Tao Liu, Marina A Gritsenko, Wei-Jun Qian, 2018, Analytical chemistry.

Statistically inferring protein-protein associations with affinity isolation LC-MS/MS assays.

Kevin K Anderson, Dale A Pelletier, Amanda M White, 2007, Journal of proteome research.

Simple protein complex purification and identification method for high-throughput mapping of protein interaction networks.

Ronald J Moore, Liang Shi, Joshua N Adkins, 2005, Journal of proteome research.

Blazing Signature Filter: a library for fast pairwise similarity comparisons

Grant M. Fujimoto, H. Wiley, S. Payne, 2017, bioRxiv.

Oscillatory dynamics of the extracellular signal-regulated kinase pathway.

H. Shankaran, H. Wiley, 2010, Current opinion in genetics & development.

A Phosphoproteomics Data Resource for Systems-level Modeling of Kinase Signaling Networks

H. Sauro, W. Qian, H. Wiley, 2023, bioRxiv.

Blazing Signature Filter: a library for fast pairwise similarity comparisons

Joon-Yong Lee, H. Steven Wiley, Ryan Wilson, 2017, BMC Bioinformatics.