B. Bartel

发表

A uniform system for microRNA annotation.

G. Ruvkun, V. Ambros, S. Eddy, 2003, RNA.

Prediction of Plant MicroRNA Targets

B. Reinhart, C. Burge, L. Lim, 2002, Cell.

MicroRNAs in plants.

B. Reinhart, D. Bartel, E. Weinstein, 2002, Genes & development.

MicroRNAS and their regulatory roles in plants.

D. Bartel, M. Jones-Rhoades, B. Bartel, 2006, Annual review of plant biology.

Criteria for Annotation of Plant MicroRNAs

D. Bartel, Y. Qi, S. Griffiths-Jones, 2008, The Plant Cell Online.

ILR1, an amidohydrolase that releases active indole-3-acetic acid from conjugates.

G. Fink, B. Bartel, 1995, Science.

MicroRNAs directing siRNA biogenesis

B. Bartel, 2005, Nature Structural &Molecular Biology.

Auxin: regulation, action, and interaction.

B. Bartel, A. W. Woodward, 2005, Annals of botany.

MicroRNA Regulation of NAC-Domain Targets Is Required for Proper Formation and Separation of Adjacent Embryonic, Vegetative, and Floral Organs

Diana V. Dugas, D. Bartel, B. Bartel, 2004, Current Biology.

MicroRNAs: At the Root of Plant Development?1

David P. Bartel, D. Bartel, B. Bartel, 2003, Plant Physiology.

Mutations in Arabidopsis acyl-CoA oxidase genes reveal distinct and overlapping roles in beta-oxidation.

B. Bartel, Arthur Millius, B. K. Zolman, 2005, The Plant journal : for cell and molecular biology.

Guidelines for the use and interpretation of assays formonitoring autophagy (3rd edition)

Sangeeta Khare, Xin Qi, Ying Wang, 2016 .

A role for the root cap in root branching revealed by the non-auxin probe naxillin.

D. Inzé, B. Bartel, S. Kepinski, 2012, Nature chemical biology.

A library of Arabidopsis 35S-cDNA lines for identifying novel mutants

B. Bartel, S. LeClere, 2001, Plant Molecular Biology.

Plant Peroxisomes: Biogenesis and Function

B. Bartel, R. Mullen, A. Baker, 2012, Plant Cell.

Seeing Red

B. Bartel, S. Matsuda, 2003, Science.

Transport and metabolism of the endogenous auxin precursor indole-3-butyric acid.

B. Bartel, L. Strader, 2011, Molecular plant.

Arabidopsis PIS1 encodes the ABCG37 transporter of auxinic compounds including the auxin precursor indole-3-butyric acid

A. Murphy, J. Friml, B. Bartel, 2010, Proceedings of the National Academy of Sciences.

Arabidopsis mutants resistant to the auxin effects of indole-3-acetonitrile are defective in the nitrilase encoded by the NIT1 gene.

G. Fink, B. Bartel, J. Normanly, 1997, The Plant cell.

A Family of Auxin-Conjugate Hydrolases That Contributes to Free Indole-3-Acetic Acid Levels during Arabidopsis Germination1

K. Ljung, G. Sandberg, B. Bartel, 2004, Plant Physiology.

A Receptor for Auxin

B. Bartel, A. W. Woodward, 2005, The Plant Cell Online.

The Arabidopsis pxa 1 Mutant Is Defective in an ATP-Binding Cassette Transporter-Like Protein Required for Peroxisomal Fatty Acid-Oxidation 1

B. Bartel, B. K. Zolman, I. D. Silva, 2001 .

Disrupting Autophagy Restores Peroxisome Function to an Arabidopsis lon2 Mutant and Reveals a Role for the LON2 Protease in Peroxisomal Matrix Protein Degradation[C][W]

B. Bartel, Mauro A Rinaldi, Lisa M. Farmer, 2013, Plant Cell.

Proteaphagy-Selective Autophagy of Inactive Proteasomes.

B. Bartel, 2015, Molecular cell.

Ethylene directs auxin to control root cell expansion.

B. Bartel, L. Strader, Grace L. Chen, 2010, The Plant journal : for cell and molecular biology.

A Gain-of-Function Mutation in IAA28 Suppresses Lateral Root Development

B. Bartel, L. E. Rogg, Jamie Lasswell, 2001, Plant Cell.

Differential regulation of an auxin-producing nitrilase gene family in Arabidopsis thaliana.

G. Fink, B. Bartel, Gerald R. Fink, 1994, Proceedings of the National Academy of Sciences of the United States of America.

Multiple Facets of Arabidopsis Seedling Development Require  Indole-3-Butyric Acid–Derived Auxin[W]

D. L. Wheeler, B. Bartel, L. Strader, 2011, Plant Cell.

Peroxisome Function, Biogenesis, and Dynamics in Plants1[OPEN]

B. Bartel, Yun-Ting Kao, Kim L Gonzalez, 2017, Plant Physiology.

Update on Plant Peroxisomes Peroxisome Function , Biogenesis , and Dynamics in Plants 1 [ OPEN ]

B. Bartel, Yun-Ting Kao, Kim L Gonzalez, 2017 .

The Early-Acting Peroxin PEX19 Is Redundantly Encoded, Farnesylated, and Essential for Viability in Arabidopsis thaliana

B. Bartel, L. Strader, Sarah E. Burkhart, 2016, PloS one.

Protein Transport In and Out of Plant Peroxisomes

B. Bartel, Sarah E. Burkhart, Wendell A Fleming, 2014 .

Matrix proteins are inefficiently imported into Arabidopsis peroxisomes lacking the receptor-docking peroxin PEX14

B. Bartel, C. Murali, Matt Lingard, 2011, Plant Molecular Biology.

Reducing PEX13 Expression Ameliorates Physiological Defects of Late‐Acting Peroxin Mutants

B. Bartel, A. W. Woodward, Matt Lingard, 2011, Traffic.

Arabidopsis LON2 Is Necessary for Peroxisomal Function and Sustained Matrix Protein Import1[C][W][OA]

B. Bartel, Matt Lingard, 2009, Plant Physiology.

Arabidopsis LON 2 Is Necessary for Peroxisomal Function and Sustained Matrix Protein Import 1 [ C ] [ W ] [ OA ]

B. Bartel, Matt Lingard, 2009 .

Running head: LON2 facilitates peroxisome matrix protein import

B. Bartel, 2009 .

Arabidopsis thaliana Squalene Epoxidase 1 Is Essential for Root and Seed Development*

B. Bartel, S. Matsuda, Jeanne M Rasbery, 2007, Journal of Biological Chemistry.

Identification and Functional Characterization of Arabidopsis PEROXIN4 and the Interacting Protein PEROXIN22

B. Bartel, B. K. Zolman, I. D. Silva, 2005 .

An Arabidopsis indole-3-butyric acid-response mutant defective in PEROXIN6, an apparent ATPase implicated in peroxisomal function.

B. Bartel, B. K. Zolman, 2004, Proceedings of the National Academy of Sciences of the United States of America.

The Arabidopsis pxa1 mutant is defective in an ATP-binding cassette transporter-like protein required for peroxisomal fatty acid beta-oxidation.

B. Bartel, B. K. Zolman, I. D. Silva, 2001, Plant physiology.

Pexophagy and peroxisomal protein turnover in plants.

B. Bartel, Pierce G Young, 2016, Biochimica et biophysica acta.

Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)1

Mark R. Marten, Erinna F. Lee, Dana L. Miller, 2021, Autophagy.

Hypersensitivity to heavy water: A new conditional phenotype

A. Varshavsky, B. Bartel, 1988, Cell.

An Arabidopsis pre-RNA processing8a (prp8a) missense allele restores splicing of a subset of mis-spliced mRNAs

Natalie M. Clark, B. Bartel, Sarah E. Burkhart, 2022, Plant physiology.

A new path to auxin.

B. Bartel, L. Strader, 2008, Nature chemical biology.

The 2012 Genetics Society of America Medal

B. Bartel, 2012, Genetics.

An Auxin Transport Independent Pathway Is Involved in Phosphate Stress-Induced Root Architectural Alterations in Arabidopsis. Identification of BIG as a Mediator of Auxin in Pericycle Cell Activation1

L. Herrera-Estrella, B. Bartel, L. Sánchez-Calderón, 2005, Plant Physiology.

Disparate peroxisome‐related defects in Arabidopsis pex6 and pex26 mutants link peroxisomal retrotranslocation and oil body utilization

B. Bartel, Meredith J Ventura, Yun-Ting Kao, 2017, The Plant journal : for cell and molecular biology.

PEX16 contributions to peroxisome import and metabolism revealed by viable Arabidopsis pex16 mutants.

B. Bartel, Sarah E. Burkhart, Roxanna J Llinas, 2019, Journal of integrative plant biology.

A pex1 missense mutation improves peroxisome function in a subset of Arabidopsis pex6 mutants without restoring PEX5 recycling

B. Bartel, B. K. Zolman, Sarah E. Ratzel, 2018, Proceedings of the National Academy of Sciences.

Genetic Interactions between PEROXIN12 and Other Peroxisome-Associated Ubiquitination Components1[OPEN]

B. Bartel, Meredith J Ventura, Yun-Ting Kao, 2016, Plant Physiology.

Genetic Interactions between PEROXIN 12 and Other Peroxisome-Associated Ubiquitination Components 1 [ OPEN ]

B. Bartel, Meredith J Ventura, Yun-Ting Kao, 2016 .

Peroxisomal Ubiquitin-Protein Ligases Peroxin2 and Peroxin10 Have Distinct But Synergistic Roles in Matrix Protein Import and Peroxin5 Retrotranslocation in Arabidopsis1[W][OPEN]

B. Bartel, Sarah E. Burkhart, Yun-Ting Kao, 2014, Plant Physiology.

A viable Arabidopsis pex13 missense allele confers severe peroxisomal defects and decreases PEX5 association with peroxisomes

B. Bartel, Marta Bjornson, A. W. Woodward, 2014, Plant Molecular Biology.

Isolation of an Arabidopsis thaliana gene encoding cycloartenol synthase by functional expression in a yeast mutant lacking lanosterol synthase by the use of a chromatographic screen.

E. Corey, B. Bartel, S. Matsuda, 1993, Proceedings of the National Academy of Sciences of the United States of America.

Plant peroxisomes: recent discoveries in functional complexity, organelle homeostasis, and morphological dynamics.

B. Bartel, S. Reumann, 2016, Current opinion in plant biology.

Conversion of Endogenous Indole-3-Butyric Acid to Indole-3-Acetic Acid Drives Cell Expansion in Arabidopsis Seedlings1[C][W][OA]

B. Bartel, L. Strader, Jerry D. Cohen, 2010, Plant Physiology.

Plant peroxisome proteostasis—establishing, renovating, and dismantling the peroxisomal proteome

B. Bartel, D. Muhammad, Kathryn A Smith, 2022, Essays in biochemistry.

Silver Ions Increase Auxin Efflux Independently of Effects on Ethylene Response

B. Bartel, L. Strader, Erin R. Beisner, 2009, The Plant Cell Online.

MicroRNA regulation of gene expression in plants.

Diana V. Dugas, B. Bartel, Diana V Dugas, 2004, Current opinion in plant biology.

The PEX1 ATPase Stabilizes PEX6 and Plays Essential Roles in Peroxisome Biology1[OPEN]

B. Bartel, Mauro A Rinaldi, Meredith J Ventura, 2017, Plant Physiology.

The PEX 1 ATPase Stabilizes PEX 6 and Plays Essential Roles in Peroxisome Biology 1 [ OPEN ]

B. Bartel, Mauro A Rinaldi, Meredith J Ventura, 2017 .

The Roles of β-Oxidation and Cofactor Homeostasis in Peroxisome Distribution and Function in Arabidopsis thaliana

B. Bartel, L. Strader, Mauro A Rinaldi, 2016, Genetics.

Identification and Characterization of Arabidopsis Indole-3-Butyric Acid Response Mutants Defective in Novel Peroxisomal Enzymes

B. Bartel, Arthur Millius, B. K. Zolman, 2008, Genetics.

IBR3, a novel peroxisomal acyl-CoA dehydrogenase-like protein required for indole-3-butyric acid response

B. Bartel, B. K. Zolman, M. Nyberg, 2007, Plant Molecular Biology.

INVITED REVIEW Auxin: Regulation, Action, and Interaction

B. Bartel, A. W. Woodward, 2005 .

Inputs to the Active Indole-3-Acetic Acid Pool: De Novo Synthesis, Conjugate Hydrolysis, and Indole-3-Butyric Acid b-Oxidation

B. Bartel, B. K. Zolman, S. LeClere, 2001, Journal of Plant Growth Regulation.

Genetic analysis of indole-3-butyric acid responses in Arabidopsis thaliana reveals four mutant classes.

B. Bartel, B. K. Zolman, A. Yoder, 2000, Genetics.

Running head: Endogenous IBA provides IAA for cell expansion

B. Bartel, 2010 .

chy1, an Arabidopsis Mutant with Impaired β-Oxidation, Is Defective in a Peroxisomal β-Hydroxyisobutyryl-CoA Hydrolase*

B. Bartel, K. Krukenberg, S. Matsuda, 2001, The Journal of Biological Chemistry.

Biosynthetic diversity in plant triterpene cyclization.

B. Bartel, S. Matsuda, Jeanne M Rasbery, 2006, Current opinion in plant biology.

The IBR5 phosphatase promotes Arabidopsis auxin responses through a novel mechanism distinct from TIR1-mediated repressor degradation

B. Bartel, L. Strader, Bonnie Bartel, 2008, BMC Plant Biology.

ILR2, a novel gene regulating IAA conjugate sensitivity and metal transport in Arabidopsis thaliana.

K. Hirschi, J. Pittman, B. Bartel, 2003, The Plant journal : for cell and molecular biology.

Peroxisome-associated matrix protein degradation in Arabidopsis

B. Bartel, Matt Lingard, M. Monroe-Augustus, 2009, Proceedings of the National Academy of Sciences.

Peroxisomes form intralumenal vesicles with roles in fatty acid catabolism and protein compartmentalization in Arabidopsis

B. Bartel, Z. J. Wright, 2020, Nature Communications.

The Structure of the Arabidopsis PEX4-PEX22 Peroxin Complex—Insights Into Ubiquitination at the Peroxisomal Membrane

Mitchell D. Miller, G. Phillips, B. Bartel, 2022, Frontiers in Cell and Developmental Biology.

A facile forward-genetic screen for Arabidopsis autophagy mutants reveals twenty-one loss-of-function mutations disrupting six ATG genes

B. Bartel, Pierce G Young, Roxanna J Llinas, 2019, Autophagy.

Genetic Dissection of Peroxisome-Associated Matrix Protein Degradation in Arabidopsis thaliana

B. Bartel, Matt Lingard, Sarah E. Burkhart, 2013, Genetics.

Identification and Functional Characterization of Arabidopsis PEROXIN4 and the Interacting Protein PEROXIN22[W]

B. Bartel, B. K. Zolman, I. D. Silva, 2005, The Plant Cell Online.

MicroRNA-Directed Regulation of Arabidopsis AUXIN RESPONSE FACTOR17 Is Essential for Proper Development and Modulates Expression of Early Auxin Response Genesw⃞

D. Bartel, B. Bartel, A. Mallory, 2005, The Plant Cell Online.

Redundancy as a way of life - IAA metabolism.

B. Bartel, J. Normanly, Bonnie Bartelt, 1999, Current opinion in plant biology.

Sucrose induction of Arabidopsis miR398 represses two Cu/Zn superoxide dismutases

Diana V. Dugas, B. Bartel, Bonnie Bartel, 2008, Plant Molecular Biology.

The Arabidopsis PLEIOTROPIC DRUG RESISTANCE8/ABCG36 ATP Binding Cassette Transporter Modulates Sensitivity to the Auxin Precursor Indole-3-Butyric Acid[C][W]

B. Bartel, L. Strader, 2009, The Plant Cell Online.

AUXIN BIOSYNTHESIS.

B. Bartel, 1997, Annual review of plant physiology and plant molecular biology.

Molecular Genetics of the Ubiquitin System

S. Jentsch, M. Pazin, A. Varshavsky, 1988 .

Biology in Bloom: A Primer on the Arabidopsis thaliana Model System

B. Bartel, A. W. Woodward, 2018, Genetics.

Cloning and Characterization of IAR1, a Gene Required for Auxin Conjugate Sensitivity in Arabidopsis

B. Bartel, L. E. Rogg, Jamie Lasswell, 2000, Plant Cell.

IAR3 Encodes an Auxin Conjugate Hydrolase from Arabidopsis

B. Bartel, D. Goetz, Jamie Lasswell, 1999, Plant Cell.

The tails of ubiquitin precursors are ribosomal proteins whose fusion to ubiquitin facilitates ribosome biogenesis

Alexander Varshavsky, A. Varshavsky, B. Bartel, 1989, Nature.

Ubiquitin as a degradation signal.

A. Varshavsky, B. Bartel, W. Seufert, 1992, The EMBO journal.

Cloning and characterization of the Arabidopsis thaliana lupeol synthase gene.

W. K. Wilson, B. Bartel, S. Matsuda, 1998, Phytochemistry.

IBR5, a Dual-Specificity Phosphatase-Like Protein Modulating Auxin and Abscisic Acid Responsiveness in Arabidopsis Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.017046.

B. Bartel, B. K. Zolman, M. Monroe-Augustus, 2003, The Plant Cell Online.

An Arabidopsis Basic Helix-Loop-Helix Leucine Zipper Protein Modulates Metal Homeostasis and Auxin Conjugate Responsiveness

B. Bartel, D. Salt, A. W. Woodward, 2006, Genetics.

Auxin signaling: derepression through regulated proteolysis.

B. Bartel, L. E. Rogg, Luise E. Rogg, 2001, Developmental cell.

A gain-of-function mutation in IAA16 confers reduced responses to auxin and abscisic acid and impedes plant growth and fertility

B. Bartel, L. Strader, Mauro A Rinaldi, 2012, Plant Molecular Biology.

The Arabidopsis peroxisomal targeting signal type 2 receptor PEX7 is necessary for peroxisome function and dependent on PEX5.

B. Bartel, A. W. Woodward, 2004, Molecular biology of the cell.

Focus on Ubiquitin in Plant Biology

B. Bartel, V. Citovsky, 2012, Plant Physiology.

Arabidopsis iba response5 Suppressors Separate Responses to Various Hormones

B. Bartel, L. Strader, G. Lin, 2008, Genetics.

Arabidopsis iba response 5 ( ibr 5 ) Suppressors Separate Responses to Various Hormones

B. Bartel, L. Strader, G. Lin, 2008 .

Interdependence of the Peroxisome-targeting Receptors in Arabidopsis thaliana: PEX7 Facilitates PEX5 Accumulation and Import of PTS1 Cargo into Peroxisomes

B. Bartel, Naxhiely Martínez Ramón, 2010, Molecular biology of the cell.

A PEX5 missense allele preferentially disrupts PTS1 cargo import into Arabidopsis peroxisomes

B. Bartel, Yun-Ting Kao, Roxanna J Llinas, 2019, Plant direct.

Elevated growth temperature decreases levels of the PEX5 peroxisome-targeting signal receptor and ameliorates defects of Arabidopsis mutants with an impaired PEX4 ubiquitin-conjugating enzyme

B. Bartel, Yun-Ting Kao, 2015, BMC Plant Biology.

FKF1, a Clock-Controlled Gene that Regulates the Transition to Flowering in Arabidopsis

B. Bartel, L. E. Rogg, Jamie Lasswell, 2000, Cell.

Disruption of Arabidopsis CHY1 reveals an important role of metabolic status in plant cold stress signaling.

B. Bartel, M. Agarwal, C. Dong, 2009, Molecular plant.

Running head: Extracellular nucleotides regulate cotton fiber growth

B. Bartel, S. Roux, 2009 .

The recognition component of the N‐end rule pathway.

A. Varshavsky, B. Bartel, I. Wünning, 1990, The EMBO journal.

The N-end rule is mediated by the UBC2(RAD6) ubiquitin-conjugating enzyme.

A. Varshavsky, B. Bartel, K. Madura, 1991, Proceedings of the National Academy of Sciences of the United States of America.

The N-end rule is mediated by the UBC 2 ( RAD 6 ) ubiquitin-conjugating enzyme ( protein degradation / yeast / RAD 6 / UBC 2 )

A. Varshavsky, B. Bartel, K. Madura, 2022 .

Characterization of a Family of IAA-Amino Acid Conjugate Hydrolases from Arabidopsis*

B. Bartel, S. Matsuda, Bonnie Bartel, 2002, The Journal of Biological Chemistry.

IAR4, a Gene Required for Auxin Conjugate Sensitivity in Arabidopsis, Encodes a Pyruvate Dehydrogenase E1α Homolog1

B. Bartel, S. LeClere, Rebekah A. Rampey, 2004, Plant Physiology.

IAR 4 , a Gene Required for Auxin Conjugate Sensitivity in Arabidopsis , Encodes a Pyruvate Dehydrogenase E 1 a Homolog 1

B. Bartel, S. LeClere, Rebekah A. Rampey, 2004 .

Mutation of E1-CONJUGATING ENZYME-RELATED1 Decreases RELATED TO UBIQUITIN Conjugation and Alters Auxin Response and Development1[C][W][OA]

Y. Shamoo, B. Bartel, A. W. Woodward, 2007, Plant Physiology.

Mutation of E 1-CONJUGATING ENZYME-RELATED 1 Decreases RELATED TO UBIQUITIN Conjugation and Alters Auxin Response and Development 1 [ C ] [ W ] [ OA ]

Y. Shamoo, B. Bartel, A. W. Woodward, 2007 .

Molecular cloning, characterization, and overexpression of ERG7, the Saccharomyces cerevisiae gene encoding lanosterol synthase.

E. Corey, B. Bartel, S. Matsuda, 1994, Proceedings of the National Academy of Sciences of the United States of America.

Compensatory Mutations in Predicted Metal Transporters Modulate Auxin Conjugate Responsiveness in Arabidopsis

B. Bartel, Sarah N. Bay, David C. Farrow, 2013, G3: Genes | Genomes | Genetics.

Erratum to: Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition) (Autophagy, 12, 1, 1-222, 10.1080/15548627.2015.1100356

Sara W. Bird, Erinna F. Lee, Michael D. Kim, 2016 .

Elevated growth temperature decreases levels of the PEX5 peroxisome-targeting signal receptor and ameliorates defects of Arabidopsis mutants with an impaired PEX4 ubiquitin-conjugating enzyme

B. Bartel, Yun-Ting Kao, 2015, BMC Plant Biology.

Editorial :Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition). DOI: 10.1080/15548627.2015.1100356;WOS:000373595400001; 2-s2.0-85013763791&;PMID: 26799652

Lee, Duchen, Izzo, 2016 .

References and Notes Materials and Methods Som Text Fig. S1 Table S1 References a Microrna in a Multiple- Turnover Rnai Enzyme Complex

M. A. Rector, D. Bartel, A. Caudy, 2022 .