S. Blue

发表

Robust transcriptome-wide discovery of RNA binding protein binding sites with enhanced CLIP (eCLIP)

Gene W. Yeo, M. Guttman, Eric L. Van Nostrand, 2016, Nature Methods.

A Large-Scale Binding and Functional Map of Human RNA Binding Proteins

Gene W. Yeo, C. Burge, E. Lécuyer, 2017, bioRxiv.

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins

Gene W. Yeo, B. Graveley, Xiang-Dong Fu, 2020, Genome Biology.

Footprinting SHAPE-eCLIP Reveals Transcriptome-wide Hydrogen Bonds at RNA-Protein Interfaces.

Howard Y. Chang, Gene W. Yeo, Ryan A. Flynn, 2020, Molecular cell.

An in vivo genome-wide CRISPR screen identifies the RNA-binding protein Staufen2 as a key regulator of myeloid leukemia

Gene W. Yeo, E. V. Nostrand, A. Rao, 2020, Nature Cancer.

map of human RNA-binding proteins.

M. Duff, C. Burge, E. V. Nostrand, 2020 .

Automated, miniaturized, and scalable screening of healthcare workers, first responders, and students for SARS-CoV-2 in San Diego County

N. Coufal, S. Blue, D. Dimmock, 2021, medRxiv.

Reversal of molecular pathology by RNA-targeting Cas9 in a myotonic dystrophy mouse model

Gene W. Yeo, M. Swanson, S. Blue, 2017, bioRxiv.

Title : Reversal of molecular pathology by RNA-targeting Cas 9 in a myotonic dystrophy mouse model

Gene W. Yeo, M. Swanson, S. Blue, 2017 .

Loss of LUC7L2 and U1 snRNP subunits shifts energy metabolism from glycolysis to OXPHOS.

Gene W. Yeo, Bridget E. Begg, Alexis A. Jourdain, 2021, Molecular cell.

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins

Gene W. Yeo, B. Graveley, Xiang-Dong Fu, 2019, Genome Biology.

CRISPR/Cas9-mediated integration enables TAG-eCLIP of endogenously tagged RNA binding proteins.

Eric L Van Nostrand, Gene W Yeo, Gene W. Yeo, 2017, Methods.

Elimination of Toxic Microsatellite Repeat Expansion RNA by RNA-Targeting Cas9

Gene W. Yeo, Maurice S. Swanson, Stefan Aigner, 2017, Cell.

Elimination of ToxicMicrosatellite Repeat Expansion RNA by RNA-Targeting Cas 9 Graphical

Gene W. Yeo, M. Swanson, S. Blue, 2017 .

Perspectives on ENCODE

Xintao Wei, Christopher B. Burge, Jason Liu, 2020, Nature.

Remodeling oncogenic transcriptomes by small molecules targeting NONO

B. Cravatt, S. Blue, Hsuan-Lin Her, 2023, Nature Chemical Biology.

Transcriptome-wide identification of RNA-binding protein binding sites using seCLIP-seq

Eric L. Van Nostrand, G. Pratt, Alexander A. Shishkin, 2022, Nature Protocols.

Splicing factor SRSF1 deficiency in the liver triggers NASH-like pathology and cell death

Eric L. Van Nostrand, S. Blue, K. Prasanth, 2023, Nature Communications.

RBP Image Database: A resource for the systematic characterization of the subcellular distribution properties of human RNA binding proteins

C. Burge, E. Lécuyer, B. Graveley, 2022, Nucleic Acids Res..

Resources for the comprehensive discovery of functional RNA elements

Xintao Wei, Eric Lécuyer, Eurie L. Hong, 2015, bioRxiv.

Resource Resources for the Compre hensive Discovery of Functional RNA Elements Graphical

Eurie L. Hong, Gene W. Yeo, Jean M. Davidson, 2016 .

Resources for the comprehensive discovery of functional RNA elements

Eurie L. Hong, Gene W. Yeo, Jean M. Davidson, 2015, bioRxiv.

Gain-of-function cardiomyopathic mutations in RBM20 rewire splicing regulation and re-distribute ribonucleoprotein granules within processing bodies

Gene W. Yeo, B. Conklin, N. Salomonis, 2021, Nature Communications.

The sustained expression of Cas9 targeting toxic RNAs reverses disease phenotypes in mouse models of myotonic dystrophy type 1

Gene W. Yeo, M. Swanson, S. Blue, 2020, Nature Biomedical Engineering.

Splicing Factor SRSF1 Deficiency in the Liver Triggers NASH-like Pathology via R-Loop Induced DNA Damage and Cell Death

Eric L. Van Nostrand, S. Blue, K. Prasanth, 2021, bioRxiv.

The cohesin loader NIPBL interacts with pre-ribosomal RNA and treacle to regulate ribosomal RNA synthesis

Gene W. Yeo, Eric L. Van Nostrand, A. Lander, 2019, bioRxiv.

Author Correction: A large-scale binding and functional map of human RNA-binding proteins

Gene W. Yeo, C. Burge, E. Lécuyer, 2021, Nature.

Robust, Cost-Effective Profiling of RNA Binding Protein Targets with Single-end Enhanced Crosslinking and Immunoprecipitation (seCLIP).

Eric L. Van Nostrand, G. Pratt, C. Gelboin-Burkhart, 2017, Methods in molecular biology.

A multi-scale map of cell structure fusing protein images and interactions

Edward L. Huttlin, Gene W. Yeo, Casper F. Winsnes, 2021, Nature.

Erratum to: Robust, Cost-Effective Profiling of RNA Binding Protein Targets with Single-end Enhanced Crosslinking and Immunoprecipitation (seCLIP).

Gene W. Yeo, Eric L. Van Nostrand, G. Pratt, 2017, Methods in molecular biology.

A large-scale binding and functional map of human RNA-binding proteins

Gene W. Yeo, C. Burge, B. Graveley, 2020, Nature.

Gain-of-function cardiomyopathic mutations in RBM20 rewire splicing regulation and re-distribute ribonucleoprotein aggregates within processing bodies

S. Blue, N. Sniadecki, Y. Miyaoka, 2021 .

CRISPR / Cas 9-mediated integration enables TAG-eCLIP of endogenously tagged RNA binding proteins

Gene W. Yeo, Gabriel A. Pratt, G. Pratt, 2016 .

Epistatic interactions between NMD and TRP53 control progenitor cell maintenance and brain size

S. Blue, Brian A. Yee, Zhelin Li, 2024, Neuron.

fSHAPE, fSHAPE-eCLIP, and SHAPE-eCLIP probe transcript regions that interact with specific proteins

Howard Y. Chang, Ryan A. Flynn, S. Blue, 2021, STAR protocols.

Expanded palette of RNA base editors for comprehensive RBP-RNA interactome studies

S. Blue, Alexis C. Komor, Samuel S. Park, 2024, Nature communications.

Expanded palette of RNA base editors for comprehensive RBP-RNA interactome studies

Gene W. Yeo, S. Blue, Alexis C. Komor, 2023, bioRxiv.