S. Dittami

发表

The Ectocarpus genome and the independent evolution of multicellularity in brown algae

Corinne Da Silva, Susana M. Coelho, J. Poulain, 2010, Nature.

A community perspective on the concept of marine holobionts: state-of-the-art, challenges, and future directions

S. Sunagawa, F. Not, S. Dittami, 2019, 1907.05017.

A metabolic approach to study algal–bacterial interactions in changing environments

T. Tonon, S. Dittami, D. Eveillard, 2014, Molecular ecology.

The genome-scale metabolic network of Ectocarpus siliculosus (EctoGEM): a resource to study brown algal physiology and beyond.

A. Siegel, T. Tonon, C. Boyen, 2014, The Plant journal : for cell and molecular biology.

Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida

Susana M. Coelho, J. Poulain, J. Weissenbach, 2013, Proceedings of the National Academy of Sciences.

Detection of bacterial contaminants and hybrid sequences in the genome of the kelp Saccharina japonica using Taxoblast

E. Corre, S. Dittami, 2017, PeerJ.

A Haploid System of Sex Determination in the Brown Alga Ectocarpus sp.

Susana M. Coelho, D. Roze, R. Luthringer, 2014, Current Biology.

Genome–Scale Metabolic Networks Shed Light on the Carotenoid Biosynthesis Pathway in the Brown Algae Saccharina japonica and Cladosiphon okamuranus

Gabriel V. Markov, A. Siegel, E. Corre, 2019, Antioxidants.

Inferring biochemical reactions and metabolite structures to cope with metabolic pathway drift

Gabriel V. Markov, A. Siegel, J. Nicolas, 2018, bioRxiv.

Metabolic Complementarity Between a Brown Alga and Associated Cultivable Bacteria Provide Indications of Beneficial Interactions

A. Siegel, C. Boyen, E. Corre, 2020, Frontiers in Marine Science.

Metabolic complementarity between a brown alga and associated cultivable bacteria provide indications of beneficial interactions

A. Siegel, C. Boyen, E. Corre, 2019, bioRxiv.

Genome and metabolic network of “Candidatus Phaeomarinobacter ectocarpi” Ec32, a new candidate genus of Alphaproteobacteria frequently associated with brown algae

Anne Siegel, Catherine Boyen, Simon M. Dittami, 2014, Front. Genet..

GPR-Analyzer: a simple tool for quantitative analysis of hierarchical multispecies microarrays

S. Dittami, B. Edvardsen, 2013, Environmental Science and Pollution Research.

Analysis of expressed sequence tags from the marine microalga Pseudochattonella farcimen (Dictyochophyceae).

K. Jakobsen, S. Dittami, B. Edvardsen, 2012, Protist.

Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks

Jérémie Bourdon, Guillaume Collet, Sven Thiele, 2017, PLoS Comput. Biol..

The genome of Ectocarpus subulatus - A highly stress-tolerant brown alga.

Gabriel V. Markov, H. Himmelbauer, A. Minoche, 2020, Marine genomics.

Inferring Biochemical Reactions and Metabolite Structures to Understand Metabolic Pathway Drift

Gabriel V. Markov, A. Siegel, J. Nicolas, 2020, iScience.

The genome of Ectocarpus subulatus – a highly stress-tolerant brown alga

Gabriel V. Markov, H. Himmelbauer, A. Minoche, 2018, bioRxiv.

Transcriptomic and metabolomic analysis of copper stress acclimation in Ectocarpus siliculosus highlights signaling and tolerance mechanisms in brown algae

T. Tonon, C. Boyen, S. Dittami, 2014, BMC Plant Biology.

Determination of the efficiency of filtration of cultures from microalgae and bacteria using hollow fiber filters

F. J. Alguacil, J. Robla, S. Dittami, 2021 .

Microarray testing for the presence of toxic algae monitoring programme in Galicia (NW Spain)

S. Dittami, L. Medlin, Y. Pazos, 2013, Environmental Science and Pollution Research.

Global expression analysis of the brown alga Ectocarpus siliculosus (Phaeophyceae) reveals large-scale reprogramming of the transcriptome in response to abiotic stress

P. Rouzé, Y. van de Peer, R. König, 2009, Genome Biology.

AuCoMe: inferring and comparing metabolisms across heterogeneous sets of annotated genomes

Gabriel V. Markov, A. Siegel, J. Collén, 2022, bioRxiv.

Evolution and Expansion of the Prokaryote-Like Lipoxygenase Family in the Brown Alga Saccharina japonica

S. Dittami, N. Ye, Xiaowen Zhang, 2017, Front. Plant Sci..

Towards deciphering dynamic changes and evolutionary mechanisms involved in the adaptation to low salinities in Ectocarpus (brown algae).

T. Tonon, C. Boyen, S. Dittami, 2012, The Plant journal : for cell and molecular biology.

Normalisation genes for expression analyses in the brown alga model Ectocarpus siliculosus

T. Tonon, B. Charrier, S. Dittami, 2008, BMC Molecular Biology.

Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta)

Juying Yan, S. Shu, J. Grimwood, 2017, Proceedings of the National Academy of Sciences.

Seasonal and algal diet-driven patterns of the digestive microbiota of the European abalone Haliotis tuberculata, a generalist marine herbivore

S. Dittami, C. Leblanc, G. Michel, 2018, Microbiome.

Sharing Vitamin B12 between Bacteria and Microalgae Does Not Systematically Occur: Case Study of the Haptophyte Tisochrysis lutea

S. Dittami, M. Garnier, F. Mairet, 2022, Microorganisms.

The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea

Erich Bornberg-Bauer, Yves Van de Peer, Yao-Cheng Lin, 2016, Nature.

termination in the Brown Alga Ectocarpus sp .

Susana M. Coelho, D. Roze, R. Luthringer, 2014 .

Seasonal dynamics of harmful algae in outer Oslofjorden monitored by microarray, qPCR, and microscopy

S. Dittami, B. Edvardsen, Jessica U Kegel, 2013, Environmental Science and Pollution Research.

The Saccharina latissima microbiome: algal tissue matters more than region, season, and physiology

C. Boyen, S. Dittami, S. Rousvoal, 2022, bioRxiv.

CULTURE CONDITIONS INFLUENCE CELLULAR RNA CONTENT IN ICHTHYOTOXIC FLAGELLATES OF THE GENUS PSEUDOCHATTONELLA (DICTYOCHOPHYCEAE) 1

S. Dittami, B. Edvardsen, 2012, Journal of phycology.

Effect of essential oil- and iodine treatments on the bacterial microbiota of the brown alga Ectocarpus siliculosus

C. Boyen, S. Dittami, Bertille Burgunter-Delamare, 2020, Journal of Applied Phycology.

Integrative analysis of metabolite and transcript abundance during the short-term response to saline and oxidative stress in the brown alga Ectocarpus siliculosus.

D. Renault, T. Tonon, C. Boyen, 2011, Plant, cell & environment.

Effect of essential oil- and iodine treatments on the bacterial microbiota of the brown alga Ectocarpus siliculosus

C. Boyen, S. Dittami, Bertille Burgunter-Delamare, 2020 .

Mannitol in six autotrophic stramenopiles and Micromonas

T. Tonon, C. Boyen, S. Dittami, 2011, Plant signaling & behavior.

Molecular probes for the detection and identification of ichthyotoxic marine microalgae of the genus Pseudochattonella (Dictyochophyceae, Ochrophyta)

S. Dittami, B. Edvardsen, Ingvild Riisberg, 2013, Environmental Science and Pollution Research.

Seasonal and algal diet-driven patterns of the digestive microbiota of the European abalone Haliotis tuberculata, a generalist marine herbivore

S. Dittami, C. Leblanc, G. Michel, 2018, Microbiome.

Using automated reasoning to explore the metabolism of unconventional organisms: a first step to explore host-microbial interactions.

Anne Siegel, Clémence Frioux, Simon M Dittami, 2020, Biochemical Society transactions.

Gene Mining for Environmental Studies and Applications: Examples from Marine Organisms

T. Tonon, S. Dittami, 2014 .

The Ectocarpus genome and brown algal genomics: the Ectocarpus Genome Consortium

Corinne Da Silva, Gildas Le Corguillé, Susana M. Coelho, 2012 .

Distribution, occurrence and biotoxin composition of the main shellfish toxin producing microalgae within European waters: A comparison of methods of analysis.

B. Reguera, S. Dittami, M. Montresor, 2016, Harmful algae.

Culture conditions affect fatty acid content along with wound-activated production of polyunsaturated aldehydes in Thalassiosira rotula (Coscinodiscophyceae)

S. Dittami, Thomas Wichard, M. Boersma, 2010 .

Transitions between marine and freshwater environments provide new clues about the origins of multicellular plants and algae

J. Olsen, J. Collén, S. Dittami, 2017, Journal of phycology.

Revisiting australian ectocarpus subulatus (phaeophyceae) from the hopkins river: distribution, abiotic environment, and associated microbiota

S. Egan, J. West, C. Boyen, 2019, bioRxiv.

Exploring the Cultivable Ectocarpus Microbiome

C. Boyen, S. Dittami, C. Jeanthon, 2017, Front. Microbiol..

The Saccharina latissima microbiome: Effects of region, season, and physiology

C. Boyen, S. Dittami, S. Rousvoal, 2023, Frontiers in Microbiology.

A community perspective on the concept of marine holobionts: current status, challenges, and future directions

S. Sunagawa, F. Not, S. Dittami, 2019, PeerJ.

A community perspective on the concept of 1 marine holobionts : state-ofthe-artcurrent status , 2 challenges , and future directions

José Pintado Valverde, Jean-Christophe, S. Sunagawa, 2019 .

Insights into the potential for mutualistic and harmful host–microbe interactions affecting brown alga freshwater acclimation

A. Siegel, C. Boyen, E. Corre, 2022, Molecular ecology.

Chlorophyll-binding proteins revisited - a multigenic family of light-harvesting and stress proteins from a brown algal perspective

T. Tonon, C. Boyen, J. Collén, 2010, BMC Evolutionary Biology.

Diurnal oscillations of metabolite abundances and gene analysis provide new insights into central metabolic processes of the brown alga Ectocarpus siliculosus.

T. Tonon, C. Boyen, J. Collén, 2010, The New phytologist.

Mannitol-1-phosphate dehydrogenase activity in Ectocarpus siliculosus, a key role for mannitol synthesis in brown algae

A. Groisillier, T. Tonon, C. Boyen, 2011, Planta.

Genome Sequences of 72 Bacterial Strains Isolated from Ectocarpus subulatus: A Resource for Algal Microbiology

E. Corre, S. Dittami, G. Tanguy, 2019, Genome biology and evolution.

Host–microbe interactions as a driver of acclimation to salinity gradients in brown algal cultures

T. Tonon, C. Boyen, E. Corre, 2015, The ISME Journal.

Evaluation of a new primer combination to minimize plastid contamination in 16S rDNA metabarcoding analyses of alga-associated bacterial communities.

S. Dittami, C. Leblanc, G. Tanguy, 2019, Environmental microbiology reports.

Microarray estimation of genomic inter-strain variability in the genus Ectocarpus (Phaeophyceae)

J. Coppee, T. Tonon, J. Cock, 2011, BMC Molecular Biology.

Changing microbial activities during low salinity acclimation in the brown alga Ectocarpus subulatus

A. Siegel, C. Boyen, E. Corre, 2021, bioRxiv.

Robustness analysis of metabolic predictions in algal microbial communities based on different annotation pipelines

A. Siegel, E. Corre, S. Dittami, 2021, PeerJ.

Inferring and comparing metabolism across heterogeneous sets of annotated genomes using AuCoMe

Gabriel V. Markov, A. Siegel, J. Collén, 2023, Genome research.

The Rhodoexplorer Platform for Red Algal Genomics and Whole-Genome Assemblies for Several Gracilaria Species

Susana M. Coelho, D. Scornet, E. Corre, 2023, bioRxiv.

The genome of Ectocarpus subulatus highlights unique mechanisms for stress tolerance in brown algae

Gabriel V. Markov, H. Himmelbauer, A. Minoche, 2018 .

Genomes of extremophile crucifers: new platforms for comparative genomics and beyond

Simon M Dittami, T. Tonon, S. Dittami, 2012, Genome Biology.

Molecular probes and microarrays for the detection of toxic algae in the genera Dinophysis and Phalacroma (Dinophyta)

B. Reguera, S. Dittami, B. Edvardsen, 2012, Environmental Science and Pollution Research.

A metabolic approach to study algal–bacterial interactions in changing environments

T. Tonon, S. Dittami, D. Eveillard, 2014, Molecular ecology.

Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta)

Juying Yan, S. Shu, J. Grimwood, 2017, Proceedings of the National Academy of Sciences.

Transitions between marine and freshwater environments provide new clues about the origins of multicellular plants and algae

J. Olsen, J. Collén, S. Dittami, 2017, Journal of phycology.

Article A Haploid System of Sex Determination in the Brown Alga Ectocarpus sp.

Susana M. Coelho, Y. Peer, J. Aury, 2014 .

The genome of Ectocarpus subulatus – a highly stress-tolerant brown alga

Gabriel V. Markov, H. Himmelbauer, A. Minoche, 2018, bioRxiv.

The genome of Ectocarpus subulatus highlights unique mechanisms for stress tolerance in brown algae

Gabriel V. Markov, H. Himmelbauer, A. Minoche, 2018 .

Effects of sampling and storage procedures on 16S rDNA amplicon sequencing results of kelp microbiomes.

C. Boyen, S. Dittami, G. Tanguy, 2022, Marine genomics.

Semi-Quantitative Targeted Gas Chromatography-Mass Spectrometry Profiling Supports a Late Side-Chain Reductase Cycloartenol-to-Cholesterol Biosynthesis Pathway in Brown Algae

Gabriel V. Markov, A. Siegel, C. Boyen, 2021, Frontiers in Plant Science.

of the reveals to the

Mojgan Amirebrahimi, W. Stam, Rolf Lohaus, 2019 .

A community perspective on the concept of 1 marine holobionts: current status, challenges, 2 and future directions Marine holobionts from their origins to

S. Sunagawa, S. Dittami, C. Gachon, 2020 .

A community perspective on the concept of 1 marine holobionts: current status, challenges, 2 and future directions 3

S. Sunagawa, S. Dittami, C. Gachon, 2019 .

A community perspective on the concept of 1 marine holobionts: current status, challenges, 2 and future directions 3

S. Dittami, C. Gachon, Elena Kazamia, 2019 .