M. Araki

发表

Targeted nucleotide editing using hybrid prokaryotic and vertebrate adaptive immune systems

A. Kondo, Nozomu Yachie, K. Nishida, 2016, Science.

Mechanism-based tuning of insect 3,4-dihydroxyphenylacetaldehyde synthase for synthetic bioproduction of benzylisoquinoline alkaloids

Teppei Ogawa, T. Hasunuma, A. Kondo, 2019, Nature Communications.

Programmable cells: interfacing natural and engineered gene networks.

J. Collins, T. Gardner, C. Cantor, 2004, Proceedings of the National Academy of Sciences of the United States of America.

A Systematic Approach to Time-series Metabolite Profiling and RNA-seq Analysis of Chinese Hamster Ovary Cell Culture

T. Hasunuma, Yoshimi Hori, A. Kondo, 2017, Scientific Reports.

Development of bio-based fine chemical production through synthetic bioengineering

T. Hasunuma, A. Kondo, M. Araki, 2014, Microbial Cell Factories.

Synthesis of Sulfo-Sialic Acid Analogues: Potent Neuraminidase Inhibitors in Regards to Anomeric Functionality

G. Gao, Minoru Izumi, T. Hasunuma, 2017, Scientific Reports.

Transporter engineering in biomass utilization by yeast

A. Kondo, M. Araki, K. Hara, 2017, FEMS yeast research.

Evaluation and screening of efficient promoters to improve astaxanthin production in Xanthophyllomyces dendrorhous

A. Kondo, M. Mochizuki, M. Araki, 2014, Applied Microbiology and Biotechnology.

Transcriptome analysis of the duodenum, pancreas, liver, and muscle from diabetic Goto-Kakizaki rats fed a trypsin inhibitor derived from squid viscera.

M. Araki, H. Kishimura, N. Zaima, 2012, Journal of agricultural and food chemistry.

Improvement of oxidized glutathione fermentation by thiol redox metabolism engineering in Saccharomyces cerevisiae

K. Nishida, M. Araki, K. Hara, 2015, Applied Microbiology and Biotechnology.

An approach for dynamical network reconstruction of simple network motifs

Masahiko Nakatsui, Akihiko Kondo, Michihiro Araki, 2013, BMC Systems Biology.

Machine learning discovery of missing links that mediate alternative branches to plant alkaloids

T. Hasunuma, A. Kondo, K. Tsuge, 2021, Nature Communications.

KEGG PEPTIDE : A Database for Peptide Structures

M. Kanehisa, Toshiaki Katayama, M. Araki, 2004 .

Evaluation of genes involved in oxidative phosphorylation in yeast by developing a simple and rapid method to measure mitochondrial ATP synthetic activity

T. Hasunuma, A. Kondo, K. Nishida, 2015, Microbial Cell Factories.

Dynamic Flux Balance Analysis to Evaluate the Strain Production Performance on Shikimic Acid Production in Escherichia coli

M. Araki, Yuki Kuriya, 2020, Metabolites.

Exploration and Evaluation of Machine Learning-Based Models for Predicting Enzymatic Reactions

Naoki Watanabe, Masahiro Murata, Teppei Ogawa, 2020, J. Chem. Inf. Model..

KEGG for linking genomes to life and the environment

Yoshihiro Yamanishi, Susumu Goto, Minoru Kanehisa, 2007, Nucleic Acids Res..

From genomics to chemical genomics: new developments in KEGG

Kiyoko F. Aoki-Kinoshita, Susumu Goto, Minoru Kanehisa, 2005, Nucleic Acids Res..

Improvement of oxidized glutathione fermentation by thiol redox metabolism engineering in Saccharomyces cerevisiae

A. Kondo, K. Nishida, M. Araki, 2015, Applied Microbiology and Biotechnology.

Comprehensive analysis of distinctive polyketide and nonribosomal peptide structural motifs encoded in microbial genomes.

Minoru Kanehisa, Michihiro Araki, M. Kanehisa, 2007, Journal of molecular biology.

Pathway engineering for high-yield production of lutein in Escherichia coli

M. Takemura, N. Misawa, M. Araki, 2021, Synthetic biology.

Transcriptome analysis of the duodenum in Wistar rats fed a trypsin inhibitor derived from squid viscera.

M. Araki, H. Kishimura, N. Zaima, 2011, Journal of agricultural and food chemistry.

Prediction of drug–target interaction networks from the integration of chemical and genomic spaces

Yoshihiro Yamanishi, Minoru Kanehisa, Michihiro Araki, 2008, ISMB.

GEM-TREND: a web tool for gene expression data mining toward relevant network discovery

Satoshi Niijima, Michihiro Araki, Chunlai Feng, 2009, BMC Genomics.

Reconstruction of metabolic pathway for isobutanol production in Escherichia coli

A. Kondo, M. Araki, Yutaro Mori, 2019, Microbial Cell Factories.

Development of a multi-gene expression system in Xanthophyllomyces dendrorhous

A. Kondo, M. Mochizuki, M. Araki, 2014, Microbial Cell Factories.

Mangrove crab intestine and habitat sediment microbiomes cooperatively work on carbon and nitrogen cycling

M. Araki, T. Ichie, K. Ikejima, 2021, PloS one.

Synthesis of Sulfo-Sialic Acid Analogues: Potent Neuraminidase Inhibitors in Regards to Anomeric Functionality

G. Gao, Minoru Izumi, T. Hasunuma, 2017, Scientific Reports.

Development of breed identification markers based on a bovine 50K SNP array.

M. Araki, S Sasazaki, H Mannen, 2010, Meat science.

Knowledge extraction from literature and enzyme sequences complements FBA analysis in metabolic engineering

M. Araki, Yuki Kuriya, M. Murata, 2021, Biotechnology journal.

Application of Graph Theory to Evaluate Chemical Reactions in Cells

Teppei Ogawa, S. Aburatani, M. Araki, 2019, Journal of Physics: Conference Series.

M-path: a compass for navigating potential metabolic pathways

Masahiko Nakatsui, Robert Sidney Cox, Teppei Ogawa, 2015, Bioinform..

Different Recognition of Protein Features Depending on Deep Learning Models: A Case Study of Aromatic Decarboxylase UbiD

M. Araki, Yuki Kuriya, M. Murata, 2023, Biology.

Extraction and Analysis of Chemical Modification Patterns in Drug Development

Susumu Goto, Minoru Kanehisa, Shujiro Okuda, 2009, J. Chem. Inf. Model..