Sharadha Sakthikumar

发表

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

Christina A. Cuomo, Q. Zeng, J. Wortman, 2014, PloS one.

Genetic and phenotypic intra-species variation in Candida albicans

Christina A Cuomo, Qiandong Zeng, Judith Berman, 2015, Genome research.

Source (or Part of the following Source): Type Article Title Comparative Genomics Reveals Mobile Pathogenicity Chromosomes in Fusarium Author(s)

Christina A. Cuomo, M. Grabherr, Q. Zeng, 2022 .

Obligate biotrophy features unraveled by the genomic analysis of rust fungi

Christina A. Cuomo, M. Grabherr, E. Mauceli, 2011, Proceedings of the National Academy of Sciences.

Obligate Biotrophy Features Unraveled by the Genomic Analysis of the Rust Fungi, Melampsora larici-populina and Puccinia graminis f. sp. tritici

Christina A. Cuomo, M. Grabherr, E. Mauceli, 2011 .

Microevolution of Serial Clinical Isolates of Cryptococcus neoformans var. grubii and C. gattii

Christina A. Cuomo, T. G. Mitchell, Rhys A. Farrer, 2017, mBio.

Evolution of pathogenicity and sexual reproduction in eight Candida genomes

Manuel A. S. Santos, Martha B. Arnaud, Matthew D. Rasmussen, 2009, Nature.

Comparative Genomic Analysis of Human Fungal Pathogens Causing Paracoccidioidomycosis

Christina A. Cuomo, David I Heiman, B. Haas, 2011, PLoS genetics.

Whole-genome sequencing of glioblastoma reveals enrichment of non-coding constraint mutations in known and novel genes

Voichita D. Marinescu, Mats E. Pettersson, K. Lindblad-Toh, 2020, Genome Biology.

SETD2 Is Recurrently Mutated in Whole-Exome Sequenced Canine Osteosarcoma.

Voichita D. Marinescu, Mats E. Pettersson, K. Lindblad-Toh, 2018, Cancer research.

Comparative Genomics Integrated with Association Analysis Identifies Candidate Effector Genes Corresponding to Lr20 in Phenotype-Paired Puccinia triticina Isolates from Australia

Christina A. Cuomo, C. Cuomo, Sharadha Sakthikumar, 2017, Front. Plant Sci..

Identification of the Mating-Type (MAT) Locus That Controls Sexual Reproduction of Blastomyces dermatitidis

Christina A. Cuomo, J. Heitman, C. Cuomo, 2012, Eukaryotic Cell.

Using evolutionary constraint to define novel candidate driver genes in medulloblastoma

Mats E. Pettersson, K. Lindblad-Toh, E. Karlsson, 2022, bioRxiv.

Genome Diversity, Recombination, and Virulence across the Major Lineages of Paracoccidioides

Christina A. Cuomo, Rhys A. Farrer, S. Sykes, 2016, mSphere.

Whole-genome sequencing of glioblastoma reveals enrichment of non-coding constraint mutations in known and novel genes

Voichita D. Marinescu, Mats E. Pettersson, K. Lindblad-Toh, 2020, Genome Biology.

Genome Evolution and Innovation across the Four Major Lineages of Cryptococcus gattii

Christina A. Cuomo, Rhys A. Farrer, J. Heitman, 2015, mBio.

Genome Evolution and Innovation across the Four Major Lineages of Cryptococcus gattii

Christina A. Cuomo, Rhys A. Farrer, J. Heitman, 2015 .

Tracing Genetic Exchange and Biogeography of Cryptococcus neoformans var. grubii at the Global Population Level

Christina A. Cuomo, J. Heitman, D. Lawson, 2017, Genetics.

Population genomics of Cryptococcus neoformans var. grubii reveals new biogeographic relationships and finely maps hybridization

Christina A. Cuomo, J. Heitman, D. Lawson, 2017, bioRxiv.

Comparative Genomics Reveals Shared Mutational Landscape in Canine Hemangiosarcoma and Human Angiosarcoma

Ashley J. Schulte, K. Lindblad-Toh, E. Karlsson, 2019, Molecular Cancer Research.

Genomic analysis reveals shared genes and pathways in human and canine angiosarcoma

K. Lindblad-Toh, E. Karlsson, Jason Turner-Maier, 2019, bioRxiv.

Genomic tumor analysis provides clinical guidance for the management of diagnostically challenging cancers in dogs.

Sharadha Sakthikumar, W. Hendricks, J. Adkins, 2023, Journal of the American Veterinary Medical Association.

Whole-genome sequencing of multiple isolates of Puccinia triticina reveals asexual lineages evolving by recurrent mutations

Christina A. Cuomo, C. Cuomo, Sharadha Sakthikumar, 2020, bioRxiv.

Leveraging Base Pair Mammalian Constraint to Understand Genetic Variation and Human Disease

Voichita D. Marinescu, Andreas R. Pfenning, Graham M. Hughes, 2023, bioRxiv.

Comparative Analysis Highlights Variable Genome Content of Wheat Rusts and Divergence of the Mating Loci

Christina A. Cuomo, J. Levin, X. Adiconis, 2016, G3: Genes, Genomes, Genetics.

PIK3CA is recurrently mutated in canine mammary tumors, similarly to in human mammary neoplasia

K. Lindblad-Toh, Sharadha Sakthikumar, M. Arendt, 2023, Scientific Reports.

Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

Xiaohui S. Xie, M. Grabherr, A. Regev, 2010, Nature.

Tracing genetic exchange and biogeography of Cryptococcus neoformans var. 1 grubii at the global population level 2

J. Heitman, Matthew Fisher, D. Lawson, 2017 .

Source (or Part of the following Source): Type Article Title Comparative Genomics Reveals Mobile Pathogenicity Chromosomes in Fusarium Author(s)

Christina A. Cuomo, M. Grabherr, A. Regev, 2022 .

across the of

Rhys A. Farrer, S. Sykes, Sharadha Sakthikumar, 2016 .

Genomic analysis across 53 canine cancer types reveals novel mutations and high clinical actionability potential.

S. Byron, V. Zismann, Sharadha Sakthikumar, 2023, Veterinary and comparative oncology.

Source (or Part of the following Source): Type Article Title Comparative Genomics Reveals Mobile Pathogenicity Chromosomes in Fusarium Author(s)

Christina A. Cuomo, M. Grabherr, A. Regev, 2022 .

Novel genomic prognostic biomarkers for dogs with cancer

Sharadha Sakthikumar, N. Bergman, Lisa Parshley, 2023, Journal of veterinary internal medicine.