Lusy Handoko

发表

CTCF-Mediated Functional Chromatin Interactome in Pluripotent Cells

Chee Seng Chan, Atif Shahab, W. Sung, 2011, Nature Genetics.

Dynamic Reorganization of Extremely Long-Range Promoter-Promoter Interactions between Two States of Pluripotency.

Lusy Handoko, Ehsan Habibi, Mikhail Spivakov, 2015, Cell stem cell.

EpiMogrify Models H3K4me3 Data to Identify Signaling Molecules that Improve Cell Fate Control and Maintenance.

John F. Ouyang, Uma S. Kamaraj, E. Petretto, 2020, Cell systems.

JQ1 affects BRD2-dependent and independent transcription regulation without disrupting H4-hyperacetylated chromatin states

C. Hon, T. Umehara, B. Kaczkowski, 2017, bioRxiv.

Functional annotation of human long noncoding RNAs via molecular phenotyping.

Boris Lenhard, Lusy Handoko, Piero Carninci, 2020, Genome research.

Corrigendum: Functional annotation of human long noncoding RNAs via molecular phenotyping

Howard Y. Chang, Martin S. Taylor, Jay W. Shin, 2020 .

Functional annotation of human long noncoding RNAs via molecular phenotyping

Howard Y. Chang, Martin S. Taylor, Jay W. Shin, 2019, bioRxiv.

CHD7 Targets Active Gene Enhancer Elements to Modulate ES Cell-Specific Gene Expression

Lusy Handoko, Paul Flicek, Thomas LaFramboise, 2010, PLoS genetics.

CHD 7 Targets Active Gene Enhancer Elements to Modulate ES Cell-Specific Gene Expression

P. Flicek, G. Crawford, Chia-Lin Wei, 2010 .

In Vitro Synthesized Small Interfering RNAs Elicit RNA Interference in African Trypanosomes

H. U. Göringer, Lusy Handoko, A. Best, 2005, Journal of Biological Chemistry.

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

Martin S. Taylor, Jay W. Shin, Thomas J. Ha, 2021, Nature Communications.

A signal-noise model for significance analysis of ChIP-seq with negative control

Feng Lin, Wing-Kin Sung, Han Xu, 2010, Bioinform..

IGHMBP2 is a ribosome-associated helicase inactive in the neuromuscular disorder distal SMA type 1 (DSMA1).

M. Schuelke, Lusy Handoko, A. Sickmann, 2009, Human molecular genetics.

Asymmetric Arginine Dimethylation of Heterogeneous Nuclear Ribonucleoprotein K by Protein-arginine Methyltransferase 1 Inhibits Its Interaction with c-Src*

Lusy Handoko, B. Moritz, E. Wahle, 2006, Journal of Biological Chemistry.

CHD7 functions in the nucleolus as a positive regulator of ribosomal RNA biogenesis.

Donna M. Martin, P. Scacheri, P. Tesar, 2010, Human molecular genetics.

Protocol: Sonication-based Circular Chromosome Conformation Capture with next-generation sequencing analysis for the detection of chromatin interactions

Chia-Lin Wei, Y. Ruan, Eleanor Wong, 2010 .

Clinical variability in distal spinal muscular atrophy type 1 (DSMA1): determination of steady-state IGHMBP2 protein levels in five patients with infantile and juvenile disease

G. Dittmar, J. Mendell, U. Stephani, 2008, Journal of Molecular Medicine.

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

Thomas J. Ha, L. K. Nielsen, Kelly J. Hitchens, 2021 .

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

Thomas J. Ha, L. K. Nielsen, Kelly J. Hitchens, 2021 .

Functional Annotation of Human Long Non-Coding RNAs via Molecular Phenotyping 1

Howard Y. Chang, Martin S. Taylor, Jay W. Shin, 2019 .

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

Thomas J. Ha, L. K. Nielsen, Kelly J. Hitchens, 2022 .

A signal-noise model for significance analysis of ChIP-seq with negative control

W. Sung, Chia-Lin Wei, Lusy Handoko, 2010, Bioinform..

IGHMBP2 is a ribosome-associated helicase inactive in the neuromuscular disorder distal SMA type 1 (DSMA1).

M. Schuelke, Lusy Handoko, A. Sickmann, 2009, Human molecular genetics.

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

Thomas J. Ha, Kelly J. Hitchens, J. Harrow, 2021 .