P. D. Vize

发表

Visualization of Gene Expression and Expression as a Phenotype with the XPO, XAO and DO using a Combination of Experimental Data Sources

Ying Wang, Troy J. Pells, Malcolm E. Fisher, 2018, ICBO.

Genome evolution in the allotetraploid frog Xenopus laevis

Kevin A. Burns, Nicholas H. Putnam, J. Kitzman, 2016, Nature.

Navigating Xenbase: An Integrated Xenopus Genomics and Gene Expression Database.

Troy J. Pells, Kevin A. Burns, K. Karimi, 2018, Methods in molecular biology.

Seasonal temperature, the lunar cycle and diurnal rhythms interact in a combinatorial manner to modulate genomic responses to the environment in a reef‐building coral

Troy J. Pells, K. Karimi, P. D. Vize, 2019, Molecular ecology.

De novo assembly and annotation of the Acropora gemmifera transcriptome.

P. D. Vize, Matthew J. Oldach, P. Vize, 2018, Marine genomics.

The Genome of the Western Clawed Frog Xenopus tropicalis

Russell B. Fletcher, Nicholas H. Putnam, T. Graves, 2010, Science.

Finding Our Way through Phenotypes

Laura M. Jackson, Paula M. Mabee, Carolyn J. Lawrence, 2015, PLoS biology.

Non–Radioactive Photobiotin–Labeled Probes Detect Single Copy Genes and Low Abundance mRNA

A. Robins, P. D. Vize, S. Dalton, 1987, Bio/Technology.

Dynamic patterns of gene expression in the developing pronephros of Xenopus laevis.

J. Wallingford, P. D. Vize, T. Carroll, 1999, Developmental genetics.

Coral spawn timing is a direct response to solar light cycles and is not an entrained circadian response

P. D. Vize, A. K. Brady, J. D. Hilton, 2009, Coral Reefs.

Finding Our Way Through Phenotypes

Laura M. Jackson, Paula M. Mabee, Katja C. Seltmann, 2019 .

Perspective Finding Our Way through Phenotypes

Laura M. Jackson, Paula M. Mabee, Katja C. Seltmann, 2014 .

The protein repertoire in early vertebrate embryogenesis

Troy J. Pells, L. Peshkin, M. Kirschner, 2019, bioRxiv.

Xenopus genomic data and browser resources.

P. D. Vize, A. Zorn, P. Vize, 2017, Developmental biology.

Online analysis of development.

P. D. Vize, 2001, BioEssays : news and reviews in molecular, cellular and developmental biology.

The kidney : from normal development to congenital disease

J. Bard, A. Woolf, P. D. Vize, 2003 .

Separate Introns Gained within Short and Long Soluble Peridinin-Chlorophyll a-Protein Genes during Radiation of Symbiodinium (Dinophyceae) Clade A and B Lineages

P. D. Vize, J. R. Reichman, P. Vize, 2014, PloS one.

Molecular regulation of pronephric development.

J. Wallingford, P. D. Vize, T. Carroll, 1999, Current topics in developmental biology.

mRNA fluorescence in situ hybridization to determine overlapping gene expression in whole‐mount mouse embryos

P. D. Vize, J. Cobb, Xíaolan Zhou, 2013, Developmental dynamics : an official publication of the American Association of Anatomists.

Assays for gene function in developing Xenopus embryos.

D. Melton, P. D. Vize, R. Harland, 1991, Methods in cell biology.

The Case for Standardising Gene Nomenclature Across Vertebrates

Cynthia L. Smith, M. Westerfield, F. McCarthy, 2021 .

Introduction of a porcine growth hormone fusion gene into transgenic pigs promotes growth.

P. D. Vize, J. Wells, R. Seamark, 1988, Journal of cell science.

Amino acid cotransporter SLC3A2 is selectively expressed in the early proximal segment of Xenopus pronephric kidney nephrons.

P. D. Vize, Xíaolan Zhou, 2005, Gene expression patterns : GEP.

Collectrin/tmem27 is expressed at high levels in all segments of the developing Xenopus pronephric nephron and in the Wolffian duct.

P. D. Vize, Xíaolan Zhou, Kyle E McCoy, 2008, Gene expression patterns : GEP.

Development of the Xenopus pronephric system.

P. D. Vize, E. Jones, R. Pfister, 1995, Developmental biology.

The chloride conductance channel ClC-K is a specific marker for the Xenopus pronephric distal tubule and duct.

P. D. Vize, 2003, Gene expression patterns : GEP.

Transcriptome dynamics over a lunar month in a broadcast spawning acroporid coral

P. D. Vize, M. Matz, M. Workentine, 2017, Molecular ecology.

Anatomy and Histology of the Human Urinary System

B. Hallgrímsson, P. D. Vize, H. Benediktsson, 2003 .

Fertilization in Broadcast-Spawning Corals of the Flower Garden Banks National Marine Sanctuary

P. D. Vize, S. Gittings, D. Hagman, 1998 .

Ecological Complexity of Coral Recruitment Processes: Effects of Invertebrate Herbivores on Coral Recruitment and Growth Depends Upon Substratum Properties and Coral Species

P. D. Vize, M. Matz, S. Davies, 2013, PloS one.

Effects of herbivore grazing on juvenile coral growth in the Gulf of Mexico

P. D. Vize, S. Davies, 2008 .

Xenbase: Facilitating the Use of Xenopus to Model Human Disease

Troy J. Pells, Kevin A. Burns, K. Karimi, 2019, Front. Physiol..

Normal Table of Xenopus development: a new graphical resource

M. Horb, Christina James-Zorn, V. Ponferrada, 2022, Development.

Antibody development and use in chromogenic and fluorescent immunostaining.

N. Papalopulu, P. D. Vize, Niki Panagiotaki, 2012, Methods in molecular biology.

Non‐canonical wnt signals antagonize and canonical wnt signals promote cell proliferation in early kidney development

P. D. Vize, Xíaolan Zhou, Kyle E McCoy, 2011, Developmental dynamics : an official publication of the American Association of Anatomists.

Nephrin expression and three‐dimensional morphogenesis of the Xenopus pronephric glomus

Victor E. Gerth, P. D. Vize, Xíaolan Zhou, 2005, Developmental dynamics : an official publication of the American Association of Anatomists.

Proximo-distal specialization of epithelial transport processes within the Xenopus pronephric kidney tubules.

P. D. Vize, Xíaolan Zhou, Xiaolan Zhou, 2004, Developmental biology.

Developmental basis of pronephric defects in Xenopus body plan phenotypes.

P. D. Vize, E. Jones, D. Seufert, 1999, Developmental biology.

Multichannel wholemount fluorescent and fluorescent/chromogenic in situ hybridization in Xenopus embryos

P. D. Vize, Xíaolan Zhou, Kyle E McCoy, 2009, Nature Protocols.

Embryonic and aglomerular kidney development in the bay pipefish, Syngnathus leptorhynchus

P. D. Vize, E. Stevenson, Bianca R. Maters, 2021, bioRxiv.

Induction, Development, and Physiology of the Pronephric Tubules

J. Wallingford, P. D. Vize, T. Carroll, 2003 .

Isolation and characterization of the porcine growth hormone gene.

P. D. Vize, J. Wells, P. Vize, 1987, Gene.

Precocious expression of the Wilms' tumor gene xWT1 inhibits embryonic kidney development in Xenopus laevis.

J. Wallingford, P. D. Vize, T. Carroll, 1998, Developmental biology.

Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase

Erik Segerdell, Joshua Fortriede, Kevin A. Burns, 2013, J. Biomed. Semant..

Xenbase: a genomic, epigenomic and transcriptomic model organism database

Ying Wang, Troy J. Pells, Malcolm E. Fisher, 2017, Nucleic Acids Res..

P53 activity is essential for normal development in Xenopus

J. Wallingford, P. D. Vize, V. C. Virta, 1997, Current Biology.

Spacer alterations which increase the expression of porcine growth hormone in E. coli

P. D. Vize, J. Wells, J R Wells, 1987, FEBS letters.

DNA sequences mediating the transcriptional response of the Mix.2 homeobox gene to mesoderm induction.

P. D. Vize, P. Vize, 1996, Developmental biology.

The Pronephros; a fresh perspective.

P. D. Vize, M. V. D. van den Hoff, B. D. de Bakker, 2019, Integrative and comparative biology.

Requirement of Wnt/β-catenin signaling in pronephric kidney development

R. Moon, H. Ji, P. McCrea, 2009, Mechanisms of Development.

PCP gene family in Symbiodinium from Hippopus hippopus: low levels of concerted evolution, isoform diversity, and spectral tuning of chromophores.

T. Wilcox, P. D. Vize, J. R. Reichman, 2003, Molecular biology and evolution.

Xenbase: a Xenopus biology and genomics resource

Erik Segerdell, Peter D. Vize, Nicolas Pollet, 2007, Nucleic Acids Res..

Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database

Troy J. Pells, Kevin A. Burns, K. Karimi, 2019, Nucleic Acids Res..

Synergism between Pax-8 and lim-1 in embryonic kidney development.

P. D. Vize, T. Carroll, P. Vize, 1999, Developmental biology.

Xenbase, the Xenopus model organism database; new virtualized system, data types and genomes

Joshua Fortriede, Kevin A. Burns, Virgilio G. Ponferrada, 2014, Nucleic Acids Res..

An under-methylated region in the spacer of ribosomal RNA genes of Lilium henryi

P. D. Vize, D. Smyth, L. Kalm, 2004, Plant Molecular Biology.

Echinobase: leveraging an extant model organism database to build a knowledgebase supporting research on the genomics and biology of echinoderms

Troy J. Pells, Bradley I. Arshinoff, Carolyn J Ku, 2021, Nucleic Acids Res..

FGF is essential for both condensation and mesenchymal-epithelial transition stages of pronephric kidney tubule development.

D. Raible, P. D. Vize, C. Altmann, 2006, Developmental biology.

Model systems for the study of kidney development: use of the pronephros in the analysis of organ induction and patterning.

J. Wallingford, P. D. Vize, T. Carroll, 1997, Developmental biology.

Pronephric regulation of acid–base balance; Coexpression of carbonic anhydrase type 2 and sodium‐bicarbonate cotransporter‐1 in the late distal segment

P. D. Vize, Xíaolan Zhou, 2005, Developmental dynamics : an official publication of the American Association of Anatomists.

Xenopus p63 expression in early ectoderm and neurectoderm

P. D. Vize, Pengfei Lu, M. Barad, 2001, Mechanisms of Development.

Xenbase: gene expression and improved integration

Erik Segerdell, Peter D. Vize, Aaron M. Zorn, 2009, Nucleic Acids Res..

Xenopus Protocols

P. D. Vize, S. Hoppler, P. Vize, 2012, Methods in Molecular Biology.

Wilms' tumor suppressor gene is involved in the development of disparate kidney forms: Evidence from expression in the Xenopus Pronephros

P. D. Vize, T. Carroll, P. Vize, 1996, Developmental dynamics : an official publication of the American Association of Anatomists.

Directed evolution of the surface chemistry of the reporter enzyme β-glucuronidase

Andrew D. Ellington, Peter D. Vize, John B. Wallingford, 1999, Nature Biotechnology.

Integration of 1:1 orthology maps and updated datasets into Echinobase

Vaneet Lotay, Kamran Karimi, Veronica Hinman, 2021, Database J. Biol. Databases Curation.

The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development

Troy J. Pells, Bradley I. Arshinoff, K. Karimi, 2021, bioRxiv.

Three-Dimensional Anatomy of Mammalian Mesonephroi

P. D. Vize, M. D. Vazquez, P. Bouchet, 2003 .

The Virtual Xenbase: transitioning an online bioinformatics resource to a private cloud

Kamran Karimi, Peter D. Vize, K. Karimi, 2014, Database J. Biol. Databases Curation.

Xenbase: Core features, data acquisition, and data processing

Kevin A. Burns, Kamran Karimi, Christina James-Zorn, 2015, Genesis.

A beautiful, complex simplicity: the origins of nephron segmentation uncovered by single-cell sequencing of the pronephros.

P. D. Vize, 2023, Kidney international.

Current Understanding of the Circadian Clock Within Cnidaria

Kenneth D. Hoadley, P. D. Vize, S. Pyott, 2016 .

Transcriptome Analysis of the Circadian Regulatory Network in the Coral Acropora millepora

P. D. Vize, P. Vize, 2009, The Biological Bulletin.

A Homeric view of kidney evolution: A reprint of H.W. Smith's classic essay with a new introduction. Evolution of the kidney. 1943.

P. D. Vize, Homer W. Smith, P. Vize, 2004, The anatomical record. Part A, Discoveries in molecular, cellular, and evolutionary biology.

Lunar Phase Modulates Circadian Gene Expression Cycles in the Broadcast Spawning Coral Acropora millepora

L. Harder, B. Willis, P. D. Vize, 2016, The Biological Bulletin.

Tight Temporal Consistency of Coral Mass Spawning at the Flower Garden Banks, Gulf of Mexico, from 1997-2003

P. D. Vize, D. Hagman, D. P. Brown, 2005 .

Deepwater broadcast spawning by Montastraea cavernosa, Montastraea franksi, and Diploria strigosa at the Flower Garden Banks, Gulf of Mexico

P. D. Vize, 2006, Coral Reefs.

Multicolor fluorescent in situ mRNA hybridization (FISH) on whole mounts and sections.

N. Papalopulu, B. Bonev, P. D. Vize, 2012, Methods in molecular biology.

An ontology for Xenopus anatomy and development

Erik Segerdell, Jeff B. Bowes, Peter D Vize, 2008, BMC Developmental Biology.

Identification of a potential regulator of early transcriptional responses to mesoderm inducers in the frog embryo.

P. D. Vize, L. C. Murtaugh, M. Whitman, 1995, The EMBO journal.

A unique mutation in the Enhancer of split gene complex affects the fates of the mystery cells in the developing Drosophila eye.

G. Rubin, P. D. Vize, J. A. Fischer-Vize, 1992, Development.

Circadian Cycles of Gene Expression in the Coral, Acropora millepora

K. A. Snyder, P. D. Vize, A. K. Brady, 2011, PloS one.

Photoreception and Signal Transduction in Corals: Proteomic and Behavioral Evidence for Cytoplasmic Calcium as a Mediator of Light Responsivity

P. D. Vize, A. K. Brady, J. D. Hilton, 2012, The Biological Bulletin.

Vg1 and regional specification in vertebrates: a new role for an old molecule.

P. D. Vize, G. Thomsen, P. Vize, 1994, Trends in genetics : TIG.

The case for standardizing gene nomenclature in vertebrates

Cynthia L. Smith, M. Westerfield, A. Kwitek, 2023, Nature.

Mass spawning by two brittle star species, Ophioderma rubicundumand O. squamosissimum (Echinodermata: Ophiuroidea), at the Flower Garden Banks, Gulf of Mexico

P. D. Vize, D. Hagman, P. Vize, 2003 .