Zi Liu

发表

pRNAm-PC: Predicting N(6)-methyladenosine sites in RNA sequences via physical-chemical properties.

K. Chou, X. Xiao, Wangren Qiu, 2016, Analytical biochemistry.

iCar-PseCp: identify carbonylation sites in proteins by Monte Carlo sampling and incorporating sequence coupled effects into general PseAAC

K. Chou, X. Xiao, Zi Liu, 2016, Oncotarget.

PNP-DIPseAAC: Prediction of nucleosome position based on the DNA sequence information

X. Xiao, Wangren Qiu, Zi Liu, 2015, 2015 34th Chinese Control Conference (CCC).

iDNA-Methyl: identifying DNA methylation sites via pseudo trinucleotide composition.

K. Chou, X. Xiao, Wangren Qiu, 2015, Analytical biochemistry.

iROS-gPseKNC: Predicting replication origin sites in DNA by incorporating dinucleotide position-specific propensity into general pseudo nucleotide composition

Kuo-Chen Chou, Xuan Xiao, Zi Liu, 2016, Oncotarget.

iCataly-PseAAC: Identification of Enzymes Catalytic Sites Using Sequence Evolution Information with Grey Model GM (2,1)

Wangren Qiu, Zi Liu, Xuan Xiao, 2015, The Journal of Membrane Biology.

cpxDeepMSA: A Deep Cascade Algorithm for Constructing Multiple Sequence Alignments of Protein–Protein Interactions

Zi Liu, Dong-Jun Yu, 2022, International journal of molecular sciences.

pSumo-CD: predicting sumoylation sites in proteins with covariance discriminant algorithm by incorporating sequence-coupled effects into general PseAAC

Kuo-Chen Chou, Xuan Xiao, Jianhua Jia, 2016, Bioinform..

iAFP-Ense: An Ensemble Classifier for Identifying Antifreeze Protein by Incorporating Grey Model and PSSM into PseAAC

Xuan Xiao, Mengjuan Hui, Zi Liu, 2016, The Journal of Membrane Biology.

iPPI-Esml: An ensemble classifier for identifying the interactions of proteins by incorporating their physicochemical properties and wavelet transforms into PseAAC.

Kuo-Chen Chou, Xuan Xiao, Zi Liu, 2015, Journal of theoretical biology.

pSuc-Lys: Predict lysine succinylation sites in proteins with PseAAC and ensemble random forest approach.

Kuo-Chen Chou, Xuan Xiao, Zi Liu, 2016, Journal of theoretical biology.

iSuc-PseOpt: Identifying lysine succinylation sites in proteins by incorporating sequence-coupling effects into pseudo components and optimizing imbalanced training dataset.

Kuo-Chen Chou, Xuan Xiao, Zi Liu, 2016, Analytical biochemistry.

TargetM6A: Identifying N6-Methyladenosine Sites From RNA Sequences via Position-Specific Nucleotide Propensities and a Support Vector Machine

Hong-Bin Shen, Dong-Jun Yu, Zi Liu, 2016, IEEE Transactions on NanoBioscience.

Accurate RNA 5-methylcytosine site prediction based on heuristic physical-chemical properties reduction and classifier ensemble.

Ming Zhang, Xibei Yang, Yan Xu, 2018, Analytical biochemistry.

LS‐align: an atom‐level, flexible ligand structural alignment algorithm for high‐throughput virtual screening

Jun Hu, Yang Zhang, Dong-Jun Yu, 2018, Bioinform..

Improving N(6)-methyladenosine site prediction with heuristic selection of nucleotide physical-chemical properties.

Ming Zhang, Hong-Bin Shen, Dong-Jun Yu, 2016, Analytical biochemistry.

Identification of protein-protein binding sites by incorporating the physicochemical properties and stationary wavelet transforms into pseudo amino acid composition

Kuo-Chen Chou, Xuan Xiao, Zi Liu, 2016, Journal of biomolecular structure & dynamics.

iPPBS-Opt: A Sequence-Based Ensemble Classifier for Identifying Protein-Protein Binding Sites by Optimizing Imbalanced Training Datasets

Kuo-Chen Chou, Xuan Xiao, Zi Liu, 2016, Molecules.

iDrug-Target: predicting the interactions between drug compounds and target proteins in cellular networking via benchmark dataset optimization approach

Xiang Cheng, Kuo-Chen Chou, Xuan Xiao, 2015, Journal of biomolecular structure & dynamics.

Improving prediction of extracellular matrix proteins using evolutionary information via a grey system model and asymmetric under-sampling technique

Saeed Ahmad, Zar Nawab Khan Swati, Zi Liu, 2018 .

iAFP-Ense: An Ensemble Classifier for Identifying Antifreeze Protein by Incorporating Grey Model and PSSM into PseAAC

Zi Liu, Xuan Xiao, Mengjuan Hui, 2016, The Journal of Membrane Biology.

iDNA-Methyl: identifying DNA methylation sites via pseudo trinucleotide composition.

K. Chou, Wangren Qiu, Zi Liu, 2015, Analytical biochemistry.

Prediction of protein-protein interactions using chaos game representation and wavelet transform via the random forest algorithm.

J H Jia, Z Liu, X Chen, 2015, Genetics and molecular research : GMR.