M. Ye

发表

ProbIDtree: An automated software program capable of identifying multiple peptides from a single collision‐induced dissociation spectrum collected by a tandem mass spectrometer

R. Aebersold, B. Schwikowski, Xiao-Jun Li, 2005, Proteomics.

Systematic Analysis of Protein Phosphorylation Networks From Phosphoproteomic Data*

Hongyang Wang, H. Zou, Yu Xue, 2012, Molecular & Cellular Proteomics.

Rapid Enzyme-Mediated Biotinylation for Cell Surface Proteome Profiling.

M. Ye, Yanan Li, Yan Wang, 2021, Analytical chemistry.

Capillary trap column with strong cation-exchange monolith for automated shotgun proteome analysis.

Xiaogang Jiang, Mingliang Ye, Hanfa Zou, 2007, Analytical chemistry.

Preparation of monodisperse immobilized Ti(4+) affinity chromatography microspheres for specific enrichment of phosphopeptides.

Xinning Jiang, Mingliang Ye, Hanfa Zou, 2009, Analytica chimica acta.

Improvement of the quantification accuracy and throughput for phosphoproteome analysis by a pseudo triplex stable isotope dimethyl labeling approach.

Daniel Figeys, Mingliang Ye, Hanfa Zou, 2011, Analytical chemistry.

A multi-omic map of the lipid-producing yeast Rhodosporidium toruloides

H. Zou, M. Ye, Guojie Jin, 2012, Nature Communications.

A Simplified Thermal Proteome Profiling Approach to Screen Protein Targets of a Ligand

M. Ye, Xiaolei Zhang, Chengfei Ruan, 2020, Proteomics.

Robust phosphoproteome enrichment using monodisperse microsphere–based immobilized titanium (IV) ion affinity chromatography

S. Mohammed, A. Heck, H. Zou, 2013, Nature Protocols.

An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome.

H. Zou, M. Ye, Chunxia Song, 2014, Journal of proteomics.

Comprehensive peptidome analysis of mouse livers by size exclusion chromatography prefractionation and nanoLC-MS/MS identification.

H. Zou, M. Ye, Xinning Jiang, 2007, Journal of proteome research.

Analysis of the human urine endogenous peptides by nanoparticle extraction and mass spectrometry identification.

H. Zou, M. Ye, Lianghai Hu, 2014, Analytica chimica acta.

Protein digestomic analysis reveals the bioactivity of deer antler velvet in simulated gastrointestinal digestion.

M. Ye, Fangjun Wang, Yang Yu, 2017, Food research international.

A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.

H. Zou, M. Ye, Kai Cheng, 2013, Journal of proteomics.

Enrichment and separation techniques for large-scale proteomics analysis of the protein post-translational modifications.

H. Zou, M. Ye, Fangjun Wang, 2014, Journal of chromatography. A.

Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry.

Xinning Jiang, Mingliang Ye, Hanfa Zou, 2009, Journal of proteome research.

Large-scale quantification of single amino-acid variations by a variation-associated database search strategy.

Yangyang Bian, Mingliang Ye, Hanfa Zou, 2014, Journal of proteome research.

Monolithic enantiomer-selective stationary phases for capillary electrochromatography.

H. Zou, M. Ye, Zhiyuan Yu, 2006, Journal of separation science.

Preparation and evaluation of a molecularly imprinted polymer derivatized silica monolithic column for capillary electrochromatography and capillary liquid chromatography.

H. Zou, M. Ye, Jing Dong, 2007, Analytical chemistry.

Recent development of monolithic stationary phases with emphasis on microscale chromatographic separation.

H. Zou, M. Ye, Fangjun Wang, 2008, Journal of chromatography. A.

Highly Efficient Enrichment of O-GalNAc Glycopeptides by Using Immobilized Metal Ion Affinity Chromatography.

M. Ye, X. Qiao, He Zhu, 2021, Analytical chemistry.

A strategy with label-free quantification of the targeted peptides for quantitative peptidome analysis of human serum

H. Zou, M. Ye, Fangjun Wang, 2010 .

Enrichment of peptides from plasma for peptidome analysis using multiwalled carbon nanotubes.

H. Zou, M. Ye, Xiaogang Jiang, 2007, Journal of separation science.

Post-column fluorescence derivatization of proteins and peptides in capillary electrophoresis with a sheath flow reactor and 488 nm argon ion laser excitation.

M. Ye, Shen Hu, N. Dovichi, 2004, Journal of chromatography. A.

Development of a combined chemical and enzymatic approach for the mass spectrometric identification and quantification of aberrant N-glycosylation.

Hongyang Wang, H. Zou, M. Ye, 2012, Journal of proteomics.

Quantitative proteomics reveals the kinetics of trypsin-catalyzed protein digestion

H. Zou, M. Ye, Jiawei Mao, 2014, Analytical and Bioanalytical Chemistry.

Facile preparation of core-shell magnetic metal-organic framework nanospheres for the selective enrichment of endogenous peptides.

H. Zou, M. Ye, Yongsheng Ji, 2014, Chemistry.

Large-scale characterization of intact N-glycopeptides using an automated glycoproteomic method.

Daniel Figeys, Mingliang Ye, Hanfa Zou, 2014, Journal of proteomics.

Profiling of Endogenous Intact N-linked and O-linked Glycopeptides from Human Serum by Using an Integrated Platform.

M. Ye, Jiawei Mao, Xiaolei Zhang, 2020, Journal of proteome research.

Amine Chemistry Method for Selective Enrichment of N-Linked Glycopeptides for Glycoproteomics Analysis.

H. Zou, M. Ye, Jiawei Mao, 2015, Journal of proteome research.

Preparation of open tubular capillary columns by in situ ring-opening polymerization and their applications in cLC-MS/MS analysis of tryptic digest.

Hongwei Wang, M. Ye, Yating Yao, 2017, Analytica chimica acta.

On‐line protein digestion and peptide mapping by capillary electrophoresis with post‐column labeling for laser‐induced fluorescence detection

Regine M. Schoenherr, M. Ye, Shen Hu, 2004, Electrophoresis.

Antibiotic-Like Activity of Atomic Layer Boron Nitride for Combating Resistant Bacteria.

M. Ye, Yanan Li, H. Zuilhof, 2022, ACS nano.

A matrix of 3,4-diaminobenzophenone for the analysis of oligonucleotides by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry

H. Zou, M. Ye, C. Pan, 2006, Nucleic acids research.

Monolithic stationary phases for liquid chromatography and capillary electrochromatography.

H. Zou, M. Ye, Q. Luo, 2002, Journal of chromatography. A.

Fabrication of Hydrazone-Linked Covalent Organic Frameworks Using Alkyl Amine as Building Block for High Adsorption Capacity of Metal Ions.

M. Ye, Shujuan Ma, Junjie Ou, 2019, ACS applied materials & interfaces.

Facile preparation of multi-functionalized hybrid monoliths via two-step photo-initiated reactions for two-dimensional liquid chromatography-mass spectrometry.

H. Zhang, M. Ye, Yanan Li, 2017, Journal of chromatography. A.

One-step fabrication of cinchona-based hybrid monolithic chiral stationary phases via photo-initiated thiol-ene polymerization for cLC enantioseparation.

M. Ye, Yan Wang, Shujuan Ma, 2019, Talanta.

One-Step Preparation of Zwitterionic-Rich Hydrophilic Hydrothermal Carbonaceous Materials for Enrichment of N-Glycopeptides

H. Zhang, M. Ye, Shujuan Ma, 2019, ACS Sustainable Chemistry & Engineering.

GALNT6 promotes invasion and metastasis of human lung adenocarcinoma cells through O-glycosylating chaperone protein GRP78

M. Ye, Qi Wang, Wenwen Liu, 2020, Cell Death & Disease.

Development of phosphopeptide enrichment techniques for phosphoproteome analysis.

H. Zou, M. Ye, Guanghui Han, 2008, The Analyst.

WIDENING THE BOTTLENECK OF PHOSPHOPROTEOMICS: EVOLVING STRATEGIES FOR PHOSPHOPEPTIDE ENRICHMENT.

M. Ye, Houjiang Zhou, T. Low, 2020, Mass spectrometry reviews.

Perspectives of comprehensive phosphoproteome analysis using shotgun strategy.

H. Zou, M. Ye, Chunxia Song, 2011, Analytical chemistry.

Highly Efficient Identification of O‐GalNAc Glycosylation by an Acid‐Assisted Glycoform Simplification Approach

Xinmiao Liang, M. Ye, Jiawei Mao, 2018, Proteomics.

Comprehensive mapping of protein N-glycosylation in human liver by combining hydrophilic interaction chromatography and hydrazide chemistry.

H. Zou, M. Ye, Fangjun Wang, 2014, Journal of proteome research.

Peptidome analysis of mouse liver tissue by size exclusion chromatography prefractionation.

H. Zou, M. Ye, Lianghai Hu, 2010, Methods in molecular biology.

Matrix Thermal Shift Assay for Fast Construction of Multidimensional Ligand-Target Space.

M. Ye, Yan Wang, Jiawen Lyu, 2022, Analytical chemistry.

Automatic validation of phosphopeptide identifications by the MS2/MS3 target-decoy search strategy.

H. Zou, X. Yao, M. Ye, 2008, Journal of proteome research.

Multi-histidine functionalized material for the specific enrichment of sialylated glycopeptides.

M. Ye, Jing Dong, Lianghai Hu, 2020, Journal of chromatography. A.

An integrated strategy for high-sensitive and multi-level glycoproteome analysis from low micrograms of protein samples.

M. Ye, Liping Liu, Xiaofang Yu, 2019, Journal of chromatography. A.

Study of physically adsorbed stationary phases for open tubular capillary electrochromatography

H. Zou, M. Ye, Yukui Zhang, 1999 .

Synthesis and Characterization of Hydrazide-Linked and Amide-Linked Organic Polymers.

Hongwei Wang, M. Ye, Junjie Ou, 2016, ACS applied materials & interfaces.

[Recent advances in glycopeptide enrichment and mass spectrometry data interpretation approaches for glycoproteomics analyses].

M. Ye, Luyao Liu, Hongqiang Qin, 2021, Se pu = Chinese journal of chromatography.

Phosphoproteome analysis of human liver tissue by long‐gradient nanoflow LC coupled with multiple stage MS analysis

H. Zou, M. Ye, Chunxia Song, 2010, Electrophoresis.

Separation and detection of compounds in Honeysuckle by integration of ion-exchange chromatography fractionation with reversed-phase liquid chromatography-atmospheric pressure chemical ionization mass spectrometer and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry analy

H. Zou, M. Ye, Lianghai Hu, 2006, Journal of pharmaceutical and biomedical analysis.

The divide and conquer strategies for deep phosphoproteomics analysis

M. Ye, Yating Yao, M. Dong, 2018, TrAC Trends in Analytical Chemistry.

Biological fingerprinting analysis of the interactome of a kinase inhibitor in human plasma by a chemiproteomic approach.

H. Zou, M. Ye, Xinning Jiang, 2006, Journal of chromatography. A.

Facile preparation of microporous organic polymers functionalized macroporous hydrophilic resin for selective enrichment of glycopeptides.

Hongwei Wang, M. Ye, Jing Dong, 2018, Analytica chimica acta.

Strategies for large-scale analysis of non-histone protein methylation by LC-MS/MS.

M. Ye, Keyun Wang, Qi Wang, 2017, The Analyst.

Absolute Quantification of Cytochrome P450 and Uridine-Diphosphate Glucuronosyl Transferase Isoforms by Proteomics-based Approach

H. Zou, M. Ye, Jun Zhu, 2014 .

Improved performance of comprehensive two-dimensional HPLC separation of traditional Chinese medicines by using a silica monolithic column and normalization of peak heights.

Xueguo Chen, Mingliang Ye, Hanfa Zou, 2005, Journal of chromatography. A.

Synthesis of polymeric monoliths via thiol-maleimide polymerization reaction for highly efficient chromatographic separation.

H. Zhang, M. Ye, Ye-hua Shen, 2017, Journal of chromatography. A.

A proteomic analysis of engineered tendon formation under dynamic mechanical loading in vitro.

H. Zou, M. Ye, Fangjun Wang, 2011, Biomaterials.

A mass spectrometry-based antibody free approach enables the quantification of D-dimer in plasma.

M. Ye, Yan Wang, N. Zhang, 2020, Journal of proteome research.

Coupling strong anion-exchange monolithic capillary with MALDI-TOF MS for sensitive detection of phosphopeptides in protein digest.

H. Zou, M. Ye, Guanghui Han, 2010, Analytical chemistry.

Fractionation of phosphopeptides on strong anion-exchange capillary trap column for large-scale phosphoproteome analysis of microgram samples.

H. Zou, M. Ye, Xinning Jiang, 2010, Journal of separation science.

Methylation of PLK1 by SET7/9 ensures accurate kinetochore–microtubule dynamics

Tarsha L Ward, X. Yao, M. Ye, 2019, Journal of molecular cell biology.

Tailor-Made Stable Zr(IV)-Based Metal-Organic Frameworks for Laser Desorption/Ionization Mass Spectrometry Analysis of Small Molecules and Simultaneous Enrichment of Phosphopeptides.

H. Zou, Hongwei Wang, M. Ye, 2016, ACS applied materials & interfaces.

Automated Intact Glycopeptide Enrichment Method Facilitating Highly Reproducible Analysis of Serum Site-Specific N-Glycoproteome.

Xinmiao Liang, M. Ye, Luyao Liu, 2021, Analytical chemistry.

Specific capture of phosphopeptides by Zr4+-modified monolithic capillary column.

H. Zou, M. Ye, Jing Dong, 2007, Journal of separation science.

Dual-Functional Ti(IV)-IMAC Material Enables Simultaneous Enrichment and Separation of Diverse Glycopeptides and Phosphopeptides.

M. Ye, Jing Dong, Lingjun Li, 2021, Analytical chemistry.

Preparation and characterization of hydrophilic hybrid monoliths via thiol-ene click polymerization and their applications in chromatographic analysis and glycopeptides enrichment.

Hongwei Wang, M. Ye, Ye-hua Shen, 2017, Journal of chromatography. A.

Facile Synthesis of Dodecamine Organic Cage‐Based Monolithic Microreactor via Ring‐Opening Polymerization Following Spontaneous Reduction of Gold Ions for Continuous Flow Catalysis

Hongwei Wang, M. Ye, Xiaojun Peng, 2017 .

Instance based algorithm for posterior probability calculation by target-decoy strategy to improve protein identifications.

H. Zou, M. Ye, Xinning Jiang, 2008, Analytical chemistry.

Operative ubiquitin-specific protease 22 deubiquitination confers a more invasive phenotype to cholangiocarcinoma

M. Ye, Yan Wang, Liming Wang, 2021, Cell Death & Disease.

Large‐pore mesoporous SBA‐15 silica particles with submicrometer size as stationary phases for high‐speed CEC separation

H. Zou, X. Bao, M. Ye, 2006, Electrophoresis.

In vivo protein allylation to capture protein methylation candidates.

H. Zou, M. Ye, Z. Zhao, 2016, Chemical communications.

Global profiling of arginine dimethylation in regulating protein phase separation by a steric effect–based chemical-enrichment method

Z. Liu, M. Ye, Dan Li, 2022, Proceedings of the National Academy of Sciences of the United States of America.

Integration of covalent organic frameworks into hydrophilic membrane with hierarchical porous structure for fast adsorption of metal ions.

M. Ye, Yan Wang, H. Uyama, 2020, Journal of hazardous materials.

Mechanical stress induced protein precipitation method for drug target screening.

M. Ye, Yan Wang, Jiawen Lyu, 2021, Analytica chimica acta.

Online multidimensional separation with biphasic monolithic capillary column for shotgun proteome analysis.

H. Zou, M. Ye, Fangjun Wang, 2008, Journal of proteome research.

Solvent-induced protein precipitation for drug target discovery on proteomic scale.

M. Ye, Yanan Li, Xiaolei Zhang, 2019, Analytical chemistry.

Selective enrichment of endogenous peptides by chemically modified porous nanoparticles for peptidome analysis.

H. Zou, M. Ye, R. Wu, 2009, Journal of chromatography. A.

Immobilized Zirconium Ion Affinity Chromatography for Specific Enrichment of Phosphopeptides in Phosphoproteome Analysis*S

H. Zou, M. Ye, Xiaogang Jiang, 2007, Molecular & Cellular Proteomics.

Thiol-functionalized PIM-1 for removal and sensing for mercury (II)

M. Ye, Shujuan Ma, Junjie Ou, 2020 .

Selective extraction of peptides in acidic human plasma by porous silica nanoparticles for peptidome analysis with 2-D LC-MS/MS.

H. Zou, M. Ye, Lianghai Hu, 2007, Journal of separation science.

Inhibition of PP2A by LB100 sensitizes bladder cancer cells to chemotherapy by inducing p21 degradation.

M. Ye, Yan Wang, Yang Liu, 2022, Cellular oncology.

Construction of hierarchically porous monoliths from covalent organic frameworks (COFs) and their application for bisphenol A removal.

Hongwei Wang, M. Ye, Junjie Ou, 2018, Journal of hazardous materials.

Hydrogen bond based smart polymer for highly selective and tunable capture of multiply phosphorylated peptides

J. Liu, Xinmiao Liang, M. Ye, 2017, Nature Communications.

Method development of efficient protein extraction in bone tissue for proteome analysis.

H. Zou, M. Ye, Xinning Jiang, 2007, Journal of proteome research.

Porous styryl-linked polyhedral oligomeric silsesquioxane (POSS) polymers used as a support for platinum catalysts

M. Ye, Shujuan Ma, Junjie Ou, 2019, Materials Chemistry Frontiers.

Preparation of epoxy-functionalized hierarchically porous hybrid monoliths via free radical polymerization and application in HILIC enrichment of glycopeptides.

H. Zhang, M. Ye, Shujuan Ma, 2019, Analytica chimica acta.

Atomically precise structure determination of porous organic cage from Ab initio PXRD structure analysis: its molecular click post-functionalization and CO2 capture application.

Hongwei Wang, M. Ye, Shujuan Ma, 2020, ACS applied materials & interfaces.

Profiling of endogenous serum phosphorylated peptides by titanium (IV) immobilized mesoporous silica particles enrichment and MALDI-TOFMS detection.

Mingliang Ye, Hanfa Zou, Lianghai Hu, 2009, Analytical chemistry.

System-wide hematopoietic and immune signaling aberrations in COVID-19 revealed by deep proteome and phosphoproteome analysis

T. Kaneko, M. Ye, C. Martin, 2021, medRxiv.

Monolithic silica capillary column with coated cellulose tris(3,5‐dimethylphenylcarbamate) for capillary electrochromatographic separation of enantiomers

H. Zou, M. Ye, Junjie Ou, 2006, Electrophoresis.

Combined comparative and chemical proteomics on the mechanisms of levo-tetrahydropalmatine-induced antinociception in the formalin test.

H. Zou, M. Ye, G. Fan, 2010, Journal of proteome research.

Biological fingerprinting analysis of traditional Chinese medicines with targeting ADME/Tox property for screening of bioactive compounds by chromatographic and MS methods.

Mingliang Ye, Hanfa Zou, Lianghai Hu, 2007, Mini reviews in medicinal chemistry.

Integration of ion-exchange chromatography fractionation with reversed-phase liquid chromatography-atmospheric pressure chemical ionization mass spectrometer and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry for isolation and identification of compounds in Psoralea cor

Xueguo Chen, Mingliang Ye, Hanfa Zou, 2005, Journal of chromatography. A.

A peptide N-terminal protection strategy for comprehensive glycoproteome analysis using hydrazide chemistry based method

H. Zou, M. Ye, Yating Yao, 2015, Scientific Reports.

Separation of acidic compounds by strong anion-exchange capillary electrochromatography.

M. Ye, J. Ni, Z. Liu, 2000, Journal of chromatography. A.

Challenges and Advances in the Fabrication of Monolithic Bioseparation Materials and their Applications in Proteomics Research

M. Ye, Yan Wang, Shujuan Ma, 2019, Advanced materials.

Fast fabrication of a hybrid monolithic column containing cyclic and aliphatic hydrophobic ligands via photo-initiated thiol-ene polymerization.

M. Ye, Yanan Li, Yan Wang, 2019, Journal of separation science.

Selective extraction of peptides from human plasma by highly ordered mesoporous silica particles for peptidome analysis.

Xiaogang Jiang, Mingliang Ye, Hanfa Zou, 2007, Angewandte Chemie.

Fast preparation of hybrid monolithic columns via photo-initiated thiol-yne polymerization for capillary liquid chromatography.

H. Zhang, M. Ye, Yanan Li, 2018, Journal of chromatography. A.

Fast fabrication and modification of polyoctahedral silsesquioxane-containing monolithic columns via two-step photo-initiated reactions and their application in proteome analysis of tryptic digests.

M. Ye, Yan Wang, Shujuan Ma, 2019, Talanta.

Thiol-radical-mediated polymerization for preparation of POSS-containing polyacrylate monoliths in capillary liquid chromatography.

M. Ye, Yan Wang, Shujuan Ma, 2018, Talanta.

Separation of peptides on mixed mode of reversed‐phase and ion‐exchange capillary electrochromatography with a monolithic column

H. Zou, M. Ye, R. Wu, 2002, Electrophoresis.

Recent progress in polar stationary phases for CEC

H. Zou, M. Ye, Jing Dong, 2007, Electrophoresis.

Study of competitive binding of enantiomers to protein by affinity capillary electrochromatography.

H. Zou, M. Ye, R. Wu, 2002, Journal of pharmaceutical and biomedical analysis.

Separation of peptides by strong cation-exchange capillary electrochromatography.

M. Ye, J. Ni, Z. Liu, 2000, Journal of chromatography. A.

Comparative evaluation of MAX-Ti3AlC2 and MXene-Ti3C2 as affinity chromatographic materials for highly selective enrichment of phosphopeptides.

M. Ye, Jiawen Lyu, Zhen Liu, 2021, Nanoscale.

Analysis of polycyclic aromatic hydrocarbons by reversed phase capillary electrochromatography

G. Jiang, H. Zou, M. Ye, 2001 .

Separation of 4‐dimethylamino‐6‐(4‐methoxy‐1‐naphthyl)‐1,3,5‐triazine‐2‐hydrazine derivatives of carbonyl compounds by reversed‐phase capillary electrochromatography

Z. Liu, H. Zou, M. Ye, 2001, Electrophoresis.

Capillary electrochromatography with a silica column with a dynamically modified cationic surfactant.

M. Ye, J. Ni, Z. Liu, 1999, Journal of chromatography. A.

Integrated Microstructured Photonic Fiber as Bifunctional Robust Frit and Efficient Electrospray Emitter of Packed Column for Capillary Liquid Chromatography-Tandem Mass Spectrometry Analysis of Complex Biological Samples.

M. Ye, Yan Wang, Jiawen Lyu, 2019, Analytical chemistry.

Characterization of small-molecule–biomacromolecule interactions: From simple to complex

Mingliang Ye, Hanfa Zou, Ruijun Tian, 2005 .

Separation of acidic and neutral compounds by strong anion-exchange capillary electrochromatography dynamically modified with sodium dodecylsulfate

H. Zou, M. Ye, R. Wu, 2001 .

Enantiomer separation by strong anion‐exchange capillary electrochromatography with dynamically modified sulfated β‐cyclodextrin

Z. Liu, H. Zou, M. Ye, 2001, Electrophoresis.

Theoretical study of the separation mechanism of ionizable compounds in capillary electrochromatography

H. Zou, M. Ye, Jun Zhu, 1999 .

Modeling and optimization for separation of ionic solutes in pressurized flow capillary electrochromatography

H. Zou, M. Ye, R. Wu, 2002 .

Separation of basic, acidic and neutral compounds by capillary electrochromatography using uncharged monolithic capillary columns modified with anionic and cationic surfactants

H. Zou, M. Ye, R. Wu, 2001, Electrophoresis.

Synthesis and characterization of a new boronate affinity monolithic capillary for specific capture of cis-diol-containing compounds.

H. Zou, M. Ye, Zhen Liu, 2009, Journal of chromatography. A.

In-depth research of multidrug resistance related cell surface glycoproteome in gastric cancer.

H. Zou, M. Ye, D. Fan, 2013, Journal of proteomics.

Shotgun approach based comparative proteomic analysis of levo-tetrahydropalmatine-induced apoptosis in hepatocytes.

Mingliang Ye, Hanfa Zou, Jiangrui Zhou, 2010, Toxicology letters.

Glyco-Decipher enables glycan database-independent peptide matching and in-depth characterization of site-specific N-glycosylation

M. Ye, Yan Wang, Jiawei Mao, 2022, Nature Communications.

Pyruvate Kinase M2 Activates mTORC1 by Phosphorylating AKT1S1

M. Ye, Yan Lin, Ze-xian Liu, 2016, Scientific Reports.

The proteome analysis of oleaginous yeast Lipomyces starkeyi.

H. Zou, M. Ye, Xinning Jiang, 2011, FEMS yeast research.

Mitotic Protein CSPP1 Interacts with CENP-H Protein to Coordinate Accurate Chromosome Oscillation in Mitosis*

H. Zou, Xia Ding, X. Yao, 2015, The Journal of Biological Chemistry.

Comparative proteomic analysis of protein methylation provides insight into the resistance of hepatocellular carcinoma to 5-fluorouracil.

M. Ye, Jiawei Mao, Zhen Liu, 2020, Journal of proteomics.

Chemical proteomic study of isoprenoid chain interactome with a synthetic photoaffinity probe

H. Zou, M. Ye, Z. Zhao, 2008, Proteomics.

SIRT5 Promotes Hepatocellular Carcinoma Progression by Regulating Mitochondrial Apoptosis

M. Ye, Zhenghan Li, Liming Wang, 2019, Journal of Cancer.

Comprehensive proteome quantification reveals NgBR as a new regulator for epithelial-mesenchymal transition of breast tumor cells.

H. Zou, M. Ye, Chunxia Song, 2015, Journal of proteomics.

Targeting the EphB4 receptor tyrosine kinase sensitizes HER2-positive breast cancer cells to Lapatinib.

Pixu Liu, Hailing Cheng, M. Ye, 2020, Cancer letters.

Ultra-deep tyrosine phosphoproteomics enabled by a phosphotyrosine superbinder.

Huadong Liu, S. Li, Lei Li, 2016, Nature chemical biology.

Sensitive Approaches for the Assay of the Global Protein Tyrosine Phosphorylation in Complex Samples Using a Mutated SH2 Domain.

H. Zou, M. Ye, Yanan Li, 2017, Analytical chemistry.

Selective Enrichment of Cysteine-Containing Phosphopeptides for Subphosphoproteome Analysis.

H. Zou, M. Ye, Jing Dong, 2015, Journal of proteome research.

In situ sample processing approach (iSPA) for comprehensive quantitative phosphoproteome analysis.

H. Zou, M. Ye, Chunxia Song, 2014, Journal of proteome research.

Determination of CK2 specificity and substrates by proteome-derived peptide libraries.

H. Zou, M. Ye, Jing Dong, 2013, Journal of proteome research.

High specific phosphopeptides enrichment by titanium silicalite with post-treatment of desilication

H. Zou, M. Ye, Chunxia Song, 2013 .

Analysis of human serum phosphopeptidome by a focused database searching strategy.

Jun Zhu, Daniel Figeys, Mingliang Ye, 2013, Journal of proteomics.

Depletion of acidic phosphopeptides by SAX to improve the coverage for the detection of basophilic kinase substrates.

H. Zou, M. Ye, Chunxia Song, 2012, Journal of proteome research.

Improve the coverage for the analysis of phosphoproteome of HeLa cells by a tandem digestion approach.

H. Zou, M. Ye, Chunxia Song, 2012, Journal of proteome research.

Phosphoric acid functionalized mesoporous organo-silica (EPO) as the adsorbent for in situ enrichment and isotope labeling of endogenous phosphopeptides.

H. Zou, M. Ye, Fangjun Wang, 2012, Chemical communications.

ArMone: a software suite specially designed for processing and analysis of phosphoproteome data.

Kai Cheng, Xinning Jiang, Mingliang Ye, 2010, Journal of proteome research.

Highly specific enrichment of phosphopeptides by zirconium dioxide nanoparticles for phosphoproteome analysis

Xiaogang Jiang, Mingliang Ye, Hanfa Zou, 2007, Electrophoresis.

One-step preparation of phosphate-rich carbonaceous spheres via a hydrothermal approach for phosphopeptide analysis

H. Zhang, M. Ye, Shujuan Ma, 2019, Green Chemistry.

Facile Preparation of Titanium(IV)-Immobilized Hierarchically Porous Hybrid Monoliths.

Hongwei Wang, H. Zhang, M. Ye, 2017, Analytical chemistry.

A bead‐based approach for large‐scale identification of in vitro kinase substrates

H. Zou, M. Ye, Guanghui Han, 2011, Proteomics.

Mapping of phosphorylation sites in human MSK1 activated by a novel interaction with MRK‐β

H. Zou, M. Ye, Guanghui Han, 2010, Electrophoresis.

A MALDI-TOF MS based method for the fast screening of recombinant protein high-yield strains

M. Ye, Yanan Li, He Zhu, 2022, International Journal of Mass Spectrometry.

Optimized peptide separation and identification for mass spectrometry based proteomics via free-flow electrophoresis.

Alexey I Nesvizhskii, Ruedi Aebersold, Mingliang Ye, 2006, Journal of proteome research.

Salinity-Induced Palmella Formation Mechanism in Halotolerant Algae Dunaliella salina Revealed by Quantitative Proteomics and Phosphoproteomics

H. Zou, Sixue Chen, M. Ye, 2017, Front. Plant Sci..

A Tyrosine Phosphoproteome Analysis Approach Enabled by Selective Dephosphorylation with Protein Tyrosine Phosphatase.

L. Yao, M. Ye, Yan Wang, 2022, Analytical chemistry.

SH2 Superbinder Modified Monolithic Capillary Column for the Sensitive Analysis of Protein Tyrosine Phosphorylation.

Hongwei Wang, M. Ye, Yan Wang, 2018, Journal of proteome research.

Sensitive, Robust, and Cost-Effective Approach for Tyrosine Phosphoproteome Analysis.

H. Zou, M. Ye, Yan Wang, 2017, Analytical chemistry.

Integration of cell lysis, protein extraction, and digestion into one step for ultrafast sample preparation for phosphoproteome analysis.

H. Zou, M. Ye, Kai Cheng, 2014, Analytical chemistry.

Preparation of Polypropylene Spin Tips Filled with Immobilized Titanium(IV) Ion Monolithic Adsorbent for Robust Phosphoproteome Analysis.

H. Zou, Hongwei Wang, M. Ye, 2016, Analytical chemistry.

Antibody-Free Approach for the Global Analysis of Protein Methylation.

H. Zou, M. Ye, Yan Wang, 2016, Analytical chemistry.

Recent advances in mass spectrometry-based peptidome analysis

H. Zou, M. Ye, Lianghai Hu, 2009, Expert review of proteomics.

Recent advances in mass spectrometry-based

H. Zou, M. Ye, Lianghai Hu, 2009 .

Modification-free approaches to screen drug targets at proteome level

M. Ye, Jiawen Lyu, Keyun Wang, 2020 .

Identification of chemoresistance-related cell-surface glycoproteins in leukemia cells and functional validation of candidate glycoproteins.

H. Zou, M. Ye, D. Fan, 2014, Journal of proteome research.

Microparticle assisted precipitation screening method for robust drug target identification.

M. Ye, Yan Wang, Jiawen Lyu, 2020, Analytical chemistry.

Isobaric cross-sequence labeling of peptides by using site-selective N-terminus dimethylation.

H. Zou, M. Ye, Chunxia Song, 2012, Chemical communications.

Large‐scale phosphoproteome analysis of human liver tissue by enrichment and fractionation of phosphopeptides with strong anion exchange chromatography

Xinning Jiang, Xiaogang Jiang, Mingliang Ye, 2008, Proteomics.

Large-scale phosphoproteomeanalysis of human liver tissuebyenrichmentand fractionationofphosphopeptides with strong anion exchange chromatography

H. Zou, Jianren Gu, M. Ye, 2008 .

A New Searching Strategy for the Identification of O-Linked Glycopeptides.

Jiawei Mao, Mingliang Ye, Hongqiang Qin, 2019, Analytical chemistry.

Recent advances in methods for the analysis of protein o-glycosylation at proteome level.

Mingliang Ye, Hongqiang Qin, M. Ye, 2018, Journal of separation science.

Proteomics Analysis of O-GalNAc Glycosylation in Human Serum by an Integrated Strategy.

H. Zou, Xinmiao Liang, M. Ye, 2017, Analytical chemistry.

Optimization of filtering criterion for SEQUEST database searching to improve proteome coverage in shotgun proteomics

Guanghui Han, Xinning Jiang, Xiaogang Jiang, 2007, BMC Bioinformatics.

Characterization of site-specific glycosylation of secreted proteins associated with multi-drug resistance of gastric cancer

H. Zou, M. Ye, D. Fan, 2016, Oncotarget.

A New Workflow for the Analysis of Phosphosite Occupancy in Paired Samples by Integration of Proteomics and Phosphoproteomics Data Sets.

M. Ye, Yan Wang, Jing Dong, 2020, Journal of proteome research.

Enrichment of peptides containing consensus sequence by an enzymatic approach for targeted analysis ofproteins

H. Zou, M. Ye, Xinning Jiang, 2011, Proteomics.

Recent developments in methods and technology for analysis of biological samples by MALDI-TOF-MS

H. Zou, M. Ye, Houjiang Zhou, 2006, Analytical and bioanalytical chemistry.

Quantitative proteomic and phosphoproteomic studies reveal novel 5-fluorouracil resistant targets in hepatocellular carcinoma.

M. Ye, Yan Wang, Yating Yao, 2019, Journal of proteomics.

Facile synthesis of zwitterionic polymer-coated core-shell magnetic nanoparticles for highly specific capture of N-linked glycopeptides.

H. Zou, M. Ye, Li Peng, 2015, Nanoscale.

Coupling the immobilized trypsin microreactor of monolithic capillary with muRPLC-MS/MS for shotgun proteome analysis.

Xiaogang Jiang, Mingliang Ye, Hanfa Zou, 2006, Journal of proteome research.

An antibody‐free enrichment approach enabled by reductive glutaraldehydation for monomethyllysine proteome analysis

M. Ye, Keyun Wang, Weibing Zhang, 2022, Proteomics.

One-Step SH2 Superbinder-Based Approach for Sensitive Analysis of Tyrosine Phosphoproteome.

M. Ye, Yanan Li, Yan Wang, 2019, Journal of proteome research.

CE-microreactor-CE-MS/MS for protein analysis.

Mingliang Ye, Regine M. Schoenherr, M. Ye, 2007, Analytical chemistry.

Preparation of capillary hybrid monolithic column with sulfonate strong cation exchanger for proteome analysis.

H. Zou, M. Ye, Fangjun Wang, 2012, Journal of chromatography. A.

Polyacrylamide gel with switchable trypsin activity for analysis of proteins.

H. Zou, M. Ye, Kai Cheng, 2013, Analytical chemistry.

CD90/THY1 is over-expressed in prostate cancer-associated fibroblasts and could serve as a cancer biomarker

Richard D. Smith, P. Nelson, W. Ellis, 2010, Modern Pathology.

Selective Enrichment of Phosphopeptides Using Nanomaterials and Monolithic Materials for the Analysis of Protein Phosphorylation

H. Zou, M. Ye, Chunxia Song, 2012 .

Technologies and methods for sample pretreatment in efficient proteome and peptidome analysis

H. Zou, M. Ye, Xiaogang Jiang, 2008, Proteomics.

Advances in hyphenated analytical techniques for shotgun proteome and peptidome analysis--a review.

H. Zou, M. Ye, Xiaogang Jiang, 2007, Analytica chimica acta.

Enrichment of phosphopeptides by Fe3+-immobilized mesoporous nanoparticles of MCM-41 for MALDI and nano-LC-MS/MS analysis.

H. Zou, M. Ye, Guanghui Han, 2006, Journal of proteome research.

An overview on enrichment methods for cell surface proteome profiling.

M. Ye, Yanan Li, Hongqiang Qin, 2019, Journal of separation science.

Palladium catalyst imbedded in polymers of intrinsic microporosity for the Suzuki–Miyaura coupling reaction

H. Zhang, M. Ye, Shujuan Ma, 2018, RSC advances.

Identification of microRNA-16-5p and microRNA-21-5p in feces as potential noninvasive biomarkers for inflammatory bowel disease.

M. Ye, Qiu Zhao, Huijie Yang, 2021, Aging.

An efficient approach based on basic strong cation exchange chromatography for enriching methylated peptides with high specificity for methylproteomics analysis.

M. Ye, Yan Wang, Zhen Liu, 2021, Analytica chimica acta.

Highly effective identification of drug targets at the proteome level by pH-dependent protein precipitation

Z. Liu, M. Ye, Yan Wang, 2022, Chemical science.

Proteome-Wide Deconvolution of Drug Targets and Binding Sites by Lysine Reactivity Profiling.

M. Ye, Xiaolei Zhang, Chengfei Ruan, 2022, Analytical chemistry.

A new chromatographic approach to analyze methylproteome with enhanced lysine methylation identification performance.

M. Ye, Yan Wang, Zhen Liu, 2019, Analytica chimica acta.

Functional Nanochannels for Sensing Tyrosine Phosphorylation.

Xinmiao Liang, M. Ye, Guangyan Qing, 2020, Journal of the American Chemical Society.

High-throughput determination of the site-specific N-sialoglycan occupancy rates by differential oxidation of glycoproteins followed with quantitative glycoproteomics analysis.

H. Zou, M. Ye, Jun Zhu, 2014, Analytical chemistry.

Facile preparation of bifunctional adsorbents for efficiently enriching N-glycopeptides and phosphopeptides.

M. Ye, Yating Yao, Jing Dong, 2021, Analytica chimica acta.

One-step synthesis of hydrophilic microspheres for highly selective enrichment of N-linked glycopeptides.

M. Ye, Jing Dong, Junjie Ou, 2020, Analytica chimica acta.

Improvement of performance in label-free quantitative proteome analysis with monolithic electrospray ionization emitter.

Xinning Jiang, Mingliang Ye, Hanfa Zou, 2008, Journal of separation science.

Comprehensive analysis of the N and C terminus of endogenous serum peptides reveals a highly conserved cleavage site pattern derived from proteolytic enzymes

H. Zou, M. Ye, Fangjun Wang, 2012, Protein & Cell.

Identification of phosphopeptides with unknown cleavage specificity by a de novo sequencing assisted database search strategy

H. Zou, M. Ye, Jing Dong, 2014, Proteomics.

Enzyme Kinetics for Complex System Enables Accurate Determination of Specificity Constants of Numerous Substrates in a Mixture by Proteomics Platform*

H. Zou, M. Ye, Yan Wang, 2016, Molecular & Cellular Proteomics.

Advances in chromatographic techniques and methods in shotgun proteome analysis

H. Zou, M. Ye, Xiaogang Jiang, 2007 .

Added value for tandem mass spectrometry shotgun proteomics data validation through isoelectric focusing of peptides.

Ruedi Aebersold, Frédéric Reymond, Mingliang Ye, 2005, Journal of proteome research.

Proteomics analysis reveals the defense priming effect of chitosan oligosaccharides in Arabidopsis-Pst DC3000 interaction.

M. Ye, Xiaochen Jia, H. Yin, 2020, Plant physiology and biochemistry : PPB.

Dendritic Mesoporous Silica Nanoparticles with Abundant Ti4+ for Phosphopeptide Enrichment from Cancer Cells with 96% Specificity.

M. Ye, Yating Yao, Chengzhong Yu, 2018, Analytical Chemistry.

Facile synthesis of guanidyl-functionalized magnetic polymer microspheres for tunable and specific capture of global phosphopeptides or only multiphosphopeptides.

H. Zou, M. Ye, Weibing Zhang, 2014, ACS applied materials & interfaces.

[Recent developments in preparation of monolithic columns and their applications in proteomic analysis].

H. Zou, M. Ye, Fangjun Wang, 2009, Se pu = Chinese journal of chromatography.

Octadecylated Silica Monolith Capillary Column with Integrated Nanoelectrospray Ionization Emitter for Highly Efficient Proteome Analysis*

H. Zou, M. Ye, Xiaogang Jiang, 2006, Molecular & Cellular Proteomics.

One‐Pot Preparation of Macroporous Organic‐Silica Monolith for the Organics‐/Oil‐Water Separation

Hongwei Wang, M. Ye, Junjie Ou, 2017 .

Selective on-line serum peptide extraction and multidimensional separation by coupling a restricted-access material-based capillary trap column with nanoliquid chromatography-tandem mass spectrometry.

Mingliang Ye, Hanfa Zou, Lianghai Hu, 2009, Journal of chromatography. A.

Analysis of the endogenous human serum peptides by on-line extraction with restricted-access material and HPLC-MS/MS identification.

Mingliang Ye, Hanfa Zou, Lianghai Hu, 2014, Talanta.

Automation of nanoflow liquid chromatography‐tandem mass spectrometry for proteome analysis by using a strong cation exchange trap column

Xinning Jiang, Xiaogang Jiang, Mingliang Ye, 2007, Proteomics.

Matrix with high salt tolerance for the analysis of peptide and protein samples by desorption/ionization time-of-flight mass spectrometry.

H. Zou, M. Ye, Danke Xu, 2006, Analytical chemistry.

Fe3+ immobilized metal affinity chromatography with silica monolithic capillary column for phosphoproteome analysis

H. Zou, M. Ye, Xiaogang Jiang, 2007, Proteomics.

Casein kinase 2 interacts with human mitogen- and stress-activated protein kinase MSK1 and phosphorylates it at multiple sites.

H. Zou, M. Ye, Guanghui Han, 2009, BMB reports.

Quantitative proteomic study of myocardial mitochondria in urea transporter B knockout mice

H. Zou, M. Ye, Baoxue Yang, 2014, Proteomics.

Development of efficient protein extraction methods for shotgun proteome analysis of formalin-fixed tissues.

H. Zou, M. Ye, Xinning Jiang, 2007, Journal of proteome research.

Induction of predominant tenogenic phenotype in human dermal fibroblasts via synergistic effect of TGF-β and elongated cell shape.

W. Liu, H. Zou, Yilin Cao, 2016, American journal of physiology. Cell physiology.

Biphasic Affinity Chromatographic Approach for Deep Tyrosine Phosphoproteome Analysis.

S. Li, H. Zou, M. Ye, 2017, Analytical chemistry.

Integration of monolithic frit into the particulate capillary (IMFPC) column in shotgun proteome analysis.

H. Zou, M. Ye, Fangjun Wang, 2009, Analytica chimica acta.

Automated injection of uncleaned samples using a ten-port switching valve and a strong cation-exchange trap column for proteome analysis.

H. Zou, M. Ye, Xinning Jiang, 2007, Journal of chromatography. A.

Capillary electrochromatography with physically and dynamically absorbed stationary phases

H. Zou, M. Ye, M. Ye, 2000, Electrophoresis.

Separation of enantiomers by nanoliquid chromatography and capillary electrochromatography using a bonded cellulose trisphenylcarbamate stationary phase

H. Zou, M. Ye, Xiaoming Chen, 2002, Electrophoresis.

Global Screening of CK2 Kinase Substrates by an Integrated Phosphoproteomics Workflow

H. Zou, M. Ye, Chunxia Song, 2013, Scientific Reports.

Probing the proteomics dark regions by VAILase cleavage at aliphatic amino acids.

Hongda Wang, M. Ye, Fangjun Wang, 2020, Analytical chemistry.

Sequential extraction leading to improved proteomic analysis of the oleaginous yeast Lipomyces starkeyi.

M. Ye, Kai Cheng, X. Zhao, 2011, Se pu = Chinese journal of chromatography.

Comparative proteomic analysis of Rhodosporidium toruloides during lipid accumulation

H. Zou, M. Ye, Fangjun Wang, 2009, Yeast.

GALNT6 promotes invasion and metastasis of human lung adenocarcinoma cells through O-glycosylating chaperone protein GRP78

M. Ye, Qi Wang, Wenwen Liu, 2020, Cell Death & Disease.

Specific Enrichment of Peptides with N-Terminal Serine/Threonine by a Solid-Phase Capture-Release Approach for Efficient Proteomics Analysis.

H. Zou, M. Ye, Yating Yao, 2015, Analytical chemistry.

Facile Fabrication of Biomimetic Chitosan Membrane with Honeycomb-Like Structure for Enrichment of Glycosylated Peptides.

M. Ye, Yan Wang, H. Uyama, 2019, Analytical chemistry.

Caffeic acid phenethyl ester (CAPE) revisited: Covalent modulation of XPO1/CRM1 activities and implication for its mechanism of action

H. Zou, M. Ye, Weijie Zhao, 2017, Chemical biology & drug design.

Small-sample learning reveals propionylation in determining global protein homeostasis

M. Ye, Chenwei Wang, Di Peng, 2023, Nature communications.

Phosphoproteome analysis of human liver tissue by long‐gradient nanoflow LC coupled with multiple stage MS analysis

H. Zou, M. Ye, Chunxia Song, 2010 .

Highly Efficient Enrichment of O-GlcNAc Glycopeptides Based on Chemical Oxidation and Reversible Hydrazide Chemistry.

M. Ye, Y. Nie, Luyao Liu, 2021, Analytical chemistry.

A simple integrated system for rapid analysis of sialic‐acid‐containing N‐glycopeptides from human serum

H. Zou, M. Ye, Fangjun Wang, 2013, Proteomics.

Efficient enrichment of glycopeptides using metal-organic frameworks by hydrophilic interaction chromatography.

H. Zou, M. Ye, Yongsheng Ji, 2014, The Analyst.

Thiol-ene polymerization for hierarchically porous hybrid materials by adding degradable polycaprolactone for adsorption of bisphenol A.

H. Zhang, M. Ye, Shujuan Ma, 2019, Journal of hazardous materials.

Facile preparation of polysaccharide functionalized macroporous adsorption resin for highly selective enrichment of glycopeptides.

M. Ye, Jing Dong, Xudong Sun, 2017, Journal of chromatography. A.

Highly Efficient Release of Glycopeptides from Hydrazide Beads by Hydroxylamine Assisted PNGase F Deglycosylation for N-Glycoproteome Analysis.

H. Zou, M. Ye, Yan Wang, 2015, Analytical chemistry.

MicroRNA-205-5p regulates the chemotherapeutic resistance of hepatocellular carcinoma cells by targeting PTEN/JNK/ANXA3 pathway.

M. Ye, De-guang Sun, Li-ming Wang, 2017, American journal of translational research.

Size-selective proteolysis on mesoporous silica-based trypsin nanoreactor for low-MW proteome analysis.

H. Zou, Qianhao Min, M. Ye, 2010, Chemical communications.

Comprehensive two-dimensional HPLC to study the interaction of multiple components in Rheum palmatum L. with HSA by coupling a silica-bonded HSA column to a silica monolithic ODS column.

H. Zou, M. Ye, Lianghai Hu, 2006, Journal of separation science.

Proteomic analysis of protein methylation in the yeast Saccharomyces cerevisiae.

H. Zou, M. Ye, Jiawei Mao, 2015, Journal of proteomics.

Selective enrichment of N-terminal proline peptides via hydrazide chemistry for proteomics analysis.

M. Ye, Jiawei Mao, Weibing Zhang, 2021, Analytica chimica acta.

Dual-Functional Titanium (IV) Immobilized Metal Affinity Chromatography Enables Large-scale Profiling of Protein Mannose-6-Phosphate Glycosylation and Reveals Its Predominant Substrates.

M. Ye, Jing Dong, Lingjun Li, 2019, Analytical chemistry.

Site-specific characterization of cell membrane N-glycosylation with integrated hydrophilic interaction chromatography solid phase extraction and LC-MS/MS.

D. Figeys, H. Zou, M. Ye, 2014, Journal of proteomics.

Centrifugation assisted microreactor enables facile integration of trypsin digestion, hydrophilic interaction chromatography enrichment, and on-column deglycosylation for rapid and sensitive N-glycoproteome analysis.

H. Zou, Xinmiao Liang, M. Ye, 2012, Analytical chemistry.

A fully automated system with online sample loading, isotope dimethyl labeling and multidimensional separation for high-throughput quantitative proteome analysis.

H. Zou, M. Ye, Chunxia Song, 2010, Analytical chemistry.

Functionalization of hybrid monolithic columns via thiol-ene click reaction for proteomics analysis.

H. Zou, Hongwei Wang, M. Ye, 2017, Journal of chromatography. A.

Specific phosphopeptide enrichment with immobilized titanium ion affinity chromatography adsorbent for phosphoproteome analysis.

Xinning Jiang, Mingliang Ye, Hanfa Zou, 2008, Journal of proteome research.

Sensitive profiling of cell surface proteome by using an optimized biotinylation method.

M. Ye, Yanan Li, Yan Wang, 2019, Journal of proteomics.

Precipitate-Supported Thermal Proteome Profiling Coupled with Deep Learning for Comprehensive Screening of Drug Target Proteins.

Z. Liu, M. Ye, Yanan Li, 2022, ACS chemical biology.

A bead-based cleavage method for large-scale identification of protease substrates

Chunli Wang, Yangyang Bian, Mingliang Ye, 2016, Scientific Reports.

The Introduction of Detergents in Thermal Proteome Profiling Requires Lowering the Applied Temperatures for Efficient Target Protein Identification

M. Ye, Yan Wang, Xiaolei Zhang, 2023, Molecules.

Integrative multi-omics and drug–response characterization of patient-derived prostate cancer primary cells

M. Ye, Jiying Zhu, Minjia Tan, 2023, Signal transduction and targeted therapy.

Corrigendum: A multi-omic map of the lipid-producing yeast Rhodosporidium toruloides

H. Zou, M. Ye, Guojie Jin, 2013, Nature Communications.

Glycoproteomics Analysis Reveals Differential Expression of Site-Specific Glycosylation in Human Milk Whey during Lactation.

M. Ye, I. Szeto, Yan Jin, 2021, Journal of agricultural and food chemistry.

Capture and dimethyl labeling of glycopeptides on hydrazide beads for quantitative glycoproteomics analysis.

H. Zou, M. Ye, Fangjun Wang, 2012, Analytical chemistry.

Zirconium phosphonate-modified porous silicon for highly specific capture of phosphopeptides and MALDI-TOF MS analysis.

H. Zou, M. Ye, Guanghui Han, 2006, Journal of proteome research.

Differential analysis of N-glycoproteome between hepatocellular carcinoma and normal human liver tissues by combination of multiple protease digestion and solid phase based labeling

H. Zou, M. Ye, Fangjun Wang, 2014, Clinical Proteomics.

Preparation and evaluation of rigid porous polyacrylamide-based strong cation-exchange monolithic columns for capillary electrochromatography.

H. Zou, M. Ye, Jing Dong, 2007, Journal of separation science.

In-Depth Analysis of Glycoprotein Sialylation in Serum Using a Dual-Functional Material with Superior Hydrophilicity and Switchable Surface Charge.

H. Zou, Xinmiao Liang, M. Ye, 2017, Analytical chemistry.

Sol-gel preparation of titanium (IV)-immobilized hierarchically porous organosilica hybrid monoliths.

H. Zhang, M. Ye, Yating Yao, 2019, Analytica chimica acta.

Analysis of therapeutic monoclonal antibody glycoforms by mass spectrometry for pharmacokinetics study.

H. Zou, M. Ye, Lianghai Hu, 2017, Talanta.

Development of Glycoprotein Capture-Based Label-Free Method for the High-throughput Screening of Differential Glycoproteins in Hepatocellular Carcinoma*

Hongyang Wang, H. Zou, M. Ye, 2011, Molecular & Cellular Proteomics.

Endo-M Mediated Chemoenzymatic Approach Enables Reversible Glycopeptide Labeling for O-GlcNAcylation Analysis.

M. Ye, Y. Nie, Feng Tang, 2022, Angewandte Chemie.

Highly Efficient Analysis of Glycoprotein Sialylation in Human Serum by Simultaneous Quantification of Glycosites and Site-specific Glycoforms.

Mingming Dong, Zhimou Guo, Jiawei Mao, 2019, Journal of proteome research.

Automation of nanoflow liquid chromatography‐tandem mass spectrometry for proteome and peptide profiling analysis by using a monolithic analytical capillary column

H. Zou, M. Ye, Fangjun Wang, 2008, Electrophoresis.

MiCroKit 3.0: an integrated database of midbody, centrosome and kinetochore

Yu Xue, Zhaolei Zhang, Zexian Liu, 2009, Nucleic Acids Res..

Enantioseparation of tetrahydropalmatine and Tröger's base by molecularly imprinted monolith in capillary electrochromatography.

H. Zou, M. Ye, Jing Dong, 2007, Journal of biochemical and biophysical methods.

A new method for quantitative analysis of cell surface glycoproteome

H. Zou, M. Ye, Rui Chen, 2012, Proteomics.

Temporal Tracking of Insulin Action on the Cell Surface of Proteins at a Resolution of Ten Seconds.

M. Ye, Yanan Li, Yan Wang, 2023, Analytical chemistry.

O-Search-Pattern: A Searching Tool Utilizing the Y-Ion Pattern to Enhance O-Glycopeptide Identification for the Analysis of O-GalNAc Glycoproteome.

M. Ye, He Zhu, M. Dong, 2023, Analytical chemistry.

One-pot synthesis of magnetic colloidal nanocrystal clusters coated with chitosan for selective enrichment of glycopeptides.

H. Zou, M. Ye, Shun Feng, 2014, Analytica chimica acta.

Enhanced Interfacial H-Bond Networks Promote Glycan-Glycan Recognition and Interaction.

Ch Lai, M. Ye, Fangjun Wang, 2023, ACS applied materials & interfaces.

Enrichment of Methylated Peptides Using an Antibody‐free Approach for Global Methylproteomics Analysis

M. Ye, Keyun Wang, 2018, Current protocols in protein science.

Effects of organic modifiers on solute retention and electrokinetic migrations in micellar electrokinetic capillary chromatography

Z. Liu, H. Zou, M. Ye, 1999, Electrophoresis.

Proteomics analysis of site-specific glycoforms by a virtual multistage mass spectrometry method.

M. Ye, Jiawei Mao, Kai Cheng, 2019, Analytica chimica acta.

Trypsin-catalyzed N-terminal labeling of peptides with stable isotope-coded affinity tags for proteome analysis.

M. Ye, Kai Cheng, Keyun Wang, 2014, Analytical chemistry.

N-terminal labeling of peptides by trypsin-catalyzed ligation for quantitative proteomics.

M. Ye, Chunxia Song, Fangjun Wang, 2013, Angewandte Chemie.

Classification filtering strategy to improve the coverage and sensitivity of phosphoproteome analysis.

Xinning Jiang, Mingliang Ye, Hanfa Zou, 2010, Analytical chemistry.

Reversed-phase-reversed-phase liquid chromatography approach with high orthogonality for multidimensional separation of phosphopeptides.

Xinning Jiang, Mingliang Ye, Hanfa Zou, 2010, Analytical chemistry.

Improvement of proteome coverage using hydrophobic monolithic columns in shotgun proteome analysis.

M. Ye, Fangjun Wang, Jing Dong, 2009, Journal of chromatography. A.

The proteomic analysis improved by cleavage kinetics‐based fractionation of tryptic peptides

M. Ye, Jiawei Mao, Yangyang Bian, 2015, Proteomics.

MicroRNA-2055 p regulates the chemotherapeutic resistance of hepatocellular carcinoma cells by targeting PTEN / JNK / ANXA 3 pathway

M. Ye, Wang, De-guang Sun, 2017 .

Development of an Integrated Platform for the Simultaneous Enrichment and Characterization of N- and O-Linked Intact Glycopeptides.

Xinmiao Liang, M. Ye, Yan Wang, 2023, Analytical chemistry.

A chemoenzymatic approach enables the site‐specific conjugation of recombinant proteins

M. Ye, Yan Wang, M. Dong, 2019, Electrophoresis.

Chemoenzymatic Approach for the Proteomics Analysis of Mucin-Type Core-1 O-Glycosylation in Human Serum.

Xinmiao Liang, M. Ye, Yating Yao, 2018, Analytical chemistry.

Iminodiacetic acid derivatized porous silicon as a matrix support for sample pretreatment and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry analysis.

M. Ye, Houjiang Zhou, Xin Li, 2006, Rapid communications in mass spectrometry : RCM.

Synthesis and characterization of a new boronate affinity monolithic capillary for specific capture of cis-diol-containing compounds.

M. Ye, Zhen Liu, M. Dong, 2009, Journal of chromatography. A.

ACR-Based Probe for the Quantitative Profiling of Histidine Reactivity in the Human Proteome.

Yangyu Huang, M. Ye, Guosheng Wang, 2023, Journal of the American Chemical Society.

Development of Glycoprotein Capture-Based Label-Free Method for the High-throughput Screening of Differential Glycoproteins in Hepatocellular Carcinoma*

Hongyang Wang, M. Ye, Yexiong Tan, 2011, Molecular & Cellular Proteomics.

Enrichment and separation techniques for large-scale proteomics analysis of the protein post-translational modifications.

M. Ye, Fangjun Wang, Junfeng Huang, 2014, Journal of chromatography. A.

Large-scale characterization of intact N-glycopeptides using an automated glycoproteomic method.

D. Figeys, M. Ye, Rui Chen, 2014, Journal of proteomics.

High-throughput determination of the site-specific N-sialoglycan occupancy rates by differential oxidation of glycoproteins followed with quantitative glycoproteomics analysis.

M. Ye, Jun Zhu, Zhen Sun, 2014, Analytical Chemistry.

A fully automated system with online sample loading, isotope dimethyl labeling and multidimensional separation for high-throughput quantitative proteome analysis.

M. Ye, Chunxia Song, Fangjun Wang, 2010, Analytical chemistry.

Reversed-phase-reversed-phase liquid chromatography approach with high orthogonality for multidimensional separation of phosphopeptides.

M. Ye, Chunxia Song, Xinning Jiang, 2010, Analytical chemistry.

A large-scale protein phosphorylation analysis reveals novel phosphorylation motifs and phosphoregulatory networks in Arabidopsis.

M. Ye, Kai Cheng, Junxian He, 2013, Journal of proteomics.

Recent developments in methods and technology for analysis of biological samples by MALDI-TOF-MS

M. Ye, Houjiang Zhou, C. Pan, 2006, Analytical and bioanalytical chemistry.

Specific phosphopeptide enrichment with immobilized titanium ion affinity chromatography adsorbent for phosphoproteome analysis.

M. Ye, Xinning Jiang, Guanghui Han, 2008, Journal of proteome research.

Effects of organic modifiers on retention mechanism and selectivity in micellar electrokinetic capillary chromatography studied by linear solvation energy relationships.

M. Ye, J. Ni, Z. Liu, 1999, Journal of chromatography. A.

Au–cysteine modified macroporous adsorption resin: preparation and highly selective enrichment and identification of N-linked glycopeptides from the complex biological sample

M. Ye, Jing Dong, Xudong Sun, 2016 .

Xinmiao Liang, M. Ye, Fangjun Wang, 2012, Analytical chemistry.

Investigating the Relationship between the Substrates' Consumption and Their Abundances in a Complex Enzymatic System.

M. Ye, Yan Wang, Jiawei Mao, 2017, Analytical chemistry.

Combined comparative and chemical proteomics on the mechanisms of levo-tetrahydropalmatine-induced antinociception in the formalin test.

M. Ye, Chen Wang, Shuowen Wang, 2010, Journal of proteome research.

Shotgun approach based comparative proteomic analysis of levo-tetrahydropalmatine-induced apoptosis in hepatocytes.

M. Ye, Chen Wang, Shuowen Wang, 2010, Toxicology Letters.

Hydrogen bond based smart polymer for highly selective and tunable capture of multiply phosphorylated peptides

J. Liu, Xinmiao Liang, M. Ye, 2017, Nature Communications.

Comprehensive and reliable phosphorylation site mapping of individual phosphoproteins by combination of multiple stage mass spectrometric analysis with a target-decoy database search.

Xuebiao Yao, Xinning Jiang, Mingliang Ye, 2009, Analytical chemistry.

Study of physically adsorbed stationary phases for open tubular capillary electrochromatography

M. Ye, Yukui Zhang, J. Ni, 1999 .