Jeongbin Park

发表

Digenome-seq: genome-wide profiling of CRISPR-Cas9 off-target effects in human cells

Jong-il Kim, Jin-Soo Kim, Daesik Kim, 2015, Nature Methods.

Genome-wide target specificities of CRISPR-Cas9 nucleases revealed by multiplex Digenome-seq

Jin-Soo Kim, Sojung Kim, Daesik Kim, 2016, Genome research.

Deciphering programs of transcriptional regulation by combined deconvolution of multiple omics layers

R. Eils, M. Schlesner, C. Herrmann, 2017, bioRxiv.

Protein conformational dynamics dictate the binding affinity for a ligand

Hak-Sung Kim, Jeongbin Park, Eunkyung Kim, 2014, Nature Communications.

Pheno-seq – linking visual features and gene expression in 3D cell culture systems

Fabian J Theis, C. Conrad, R. Eils, 2019, Scientific Reports.

Sequence analysis Cas-Designer : a web-based tool for choice of CRISPR-Cas 9 target sites

Jin-Soo Kim, S. Bae, Jeongbin Park, 2015 .

Response to “Unexpected mutations after CRISPR–Cas9 editing in vivo”

M. Schlesner, Sang-Tae Kim, Jin-Soo Kim, 2018, Nature Methods.

Reference-based cell type matching of spatial transcriptomics data

Brian R. Long, Jeremy A. Miller, E. Lein, 2022, bioRxiv.

Modeling glioblastoma invasion using human brain organoids and single-cell transcriptomics

C. Conrad, R. Eils, Jeongbin Park, 2019, bioRxiv.

CRISPR/Cas9-mediated gene knockout screens and target identification via whole-genome sequencing uncover host genes required for picornavirus infection

Jeongbin Park, Sangsu Bae, Eunji Kim, 2017, The Journal of Biological Chemistry.

Screening drug effects in patient‐derived cancer cells links organoid responses to genome alterations

Roland Eils, Jeongbin Park, Andreas Trumpp, 2017, Molecular systems biology.

Resolving drug effects in patient-derived cancer cells links organoid responses to genome alterations

C. Conrad, R. Eils, A. Trumpp, 2017, bioRxiv.

Cas-OFFinder: a fast and versatile algorithm that searches for potential off-target sites of Cas9 RNA-guided endonucleases

Jin-Soo Kim, Jeongbin Park, Sangsu Bae, 2014, Bioinform..

pheno-seq – linking morphological features to gene expression in 3D cell culture systems

Fabian J Theis, C. Conrad, R. Eils, 2018, bioRxiv.

pheno-seq – linking 3D phenotypes of clonal tumor spheroids to gene expression

Fabian J Theis, C. Conrad, R. Eils, 2018 .

Methylation profiling identifies two subclasses of squamous cell carcinoma related to distinct cells of origin

B. Brors, Jeongbin Park, E. Herpel, 2018, Nature Communications.

Reference-based cell type matching of spatial transcriptomics data

Brian R. Long, Jeremy A. Miller, E. Lein, 2022, bioRxiv.

Cell segmentation-free inference of cell types from in situ transcriptomics data

Roland Eils, Jeongbin Park, Wonyl Choi, 2019, Nature Communications.

ShinyButchR: Interactive NMF-based decomposition workflow of genome-scale datasets

Philipp Rentzsch, Roland Eils, Carl Herrmann, 2020, Biology methods & protocols.

Development of Spleen Targeting H2S Donor Loaded Liposome for the Effective Systemic Immunomodulation and Treatment of Inflammatory Bowel Disease.

Jeongbin Park, Somin Lee, Han Na Jung, 2023, ACS nano.

RAS-pathway mutation patterns define epigenetic subclasses in juvenile myelomonocytic leukemia

Melanie Boerries, Jeongbin Park, Manuel Wiesenfarth, 2017, Nature Communications.

Cas-analyzer: an online tool for assessing genome editing results using NGS data

Jin-Soo Kim, Jeongbin Park, Sangsu Bae, 2016, Bioinform..

Cas-Database: web-based genome-wide guide RNA library design for gene knockout screens using CRISPR-Cas9

Jin-Soo Kim, Jeongbin Park, Sangsu Bae, 2016, Bioinform..

IG-MYC + neoplasms with precursor B-cell phenotype are molecularly distinct from Burkitt lymphomas.

W. Klapper, R. Siebert, E. Jaffe, 2018, Blood.

Functional States in Tumor-Initiating Cell Differentiation in Human Colorectal Cancer

C. Conrad, R. Eils, M. Kriegsmann, 2021, Cancers.

Cas-Designer: a web-based tool for choice of CRISPR-Cas9 target sites

Jin-Soo Kim, Jeongbin Park, Sangsu Bae, 2015, Bioinform..

Author Correction: Cell segmentation-free inference of cell types from in situ transcriptomics data

Lars E. Borm, R. Eils, T. Nguyen, 2021, Nature Communications.

Questioning unexpected CRISPR off-target mutations in vivo

M. Schlesner, Sang-Tae Kim, Jin-Soo Kim, 2017, bioRxiv.

Long-Term Outcomes of Bilateral Subthalamic Nucleus Deep Brain Stimulation for Patients With Parkinson's Disease: 10 Years and Beyond

Yong Hoon Lim, S. Paek, Han-Joon Kim, 2022, Neurosurgery.

Web-based design and analysis tools for CRISPR base editing

R. Eils, Sang-Tae Kim, Jin-Soo Kim, 2018, bioRxiv.

Methylation profiling identifies two subclasses of squamous cell carcinoma related to distinct cells of origin

B. Brors, Jeongbin Park, E. Herpel, 2018, Nature Communications.

READRetro: Natural Product Biosynthesis Planning with Retrieval-Augmented Dual-View Retrosynthesis

Jeongbin Park, S. Hwang, Seul Lee, 2023, bioRxiv.

Generation of Super-resolution Images from Barcode-based Spatial Transcriptomics Using Deep Image Prior

Jeongbin Park, Seungho Cook, Hongjun Choi, 2023, bioRxiv.

Reference-based cell type matching of in situ image-based spatial transcriptomics data on primary visual cortex of mouse brain

Brian R. Long, E. Lein, R. Scheuermann, 2023, Scientific reports.

Web-based design and analysis tools for CRISPR base editing

Jin-Soo Kim, Roland Eils, Jeongbin Park, 2018, BMC Bioinformatics.

IAMSAM : Image-based Analysis of Molecular signatures using the Segment-Anything Model

Jeongbin Park, Seungho Cook, Hongjun Choi, 2023, bioRxiv.

Cpf1-Database: web-based genome-wide guide RNA library design for gene knockout screens using CRISPR-Cpf1

Jeongbin Park, Sangsu Bae, Jeongbin Park, 2018, Bioinform..