Jinzen Ikebe

发表

Enhanced and effective conformational sampling of protein molecular systems for their free energy landscapes

Haruki Nakamura, J. Higo, Jinzen Ikebe, 2012, Biophysical Reviews.

Conformational requirement on peptides to exert laminin's activities and search for protein segments with laminin's activities

Haruki Nakamura, J. Higo, Jinzen Ikebe, 2009, Biopolymers.

Adaptive lambda square dynamics simulation: An efficient conformational sampling method for biomolecules

H. Kono, Jinzen Ikebe, S. Sakuraba, 2014, J. Comput. Chem..

H3 Histone Tail Conformation within the Nucleosome and the Impact of K14 Acetylation Studied Using Enhanced Sampling Simulation

Hidetoshi Kono, Jinzen Ikebe, Shun Sakuraba, 2016, PLoS Comput. Biol..

Theory for trivial trajectory parallelization of multicanonical molecular dynamics and application to a polypeptide in water

Haruki Nakamura, Junichi Higo, Narutoshi Kamiya, 2011, J. Comput. Chem..

Accessibility of the histone H3 tail in the nucleosome for binding of paired readers

H. Kono, Jinzen Ikebe, C. Musselman, 2017, Nature Communications.

Covalent Modifications of Histone H3K9 Promote Binding of CHD3.

Wei Li, H. Kono, B. Strahl, 2017, Cell reports.

Enhanced sampling simulations to construct free-energy landscape of protein–partner substrate interaction

J. Higo, Jinzen Ikebe, K. Umezawa, 2016, Biophysical Reviews.

Enzyme modification using mutation site prediction method for enhancing the regioselectivity of substrate reaction sites

Jinzen Ikebe, T. Kameda, Munenori Suzuki, 2021, Scientific Reports.

Enhanced and effective conformational sampling of protein molecular systems for their free energy landscapes

Haruki Nakamura, J. Higo, Jinzen Ikebe, 2012, Biophysical Reviews.

Simulation study on the disordered state of an Alzheimer's β amyloid peptide Aβ(12–36) in water consisting of random‐structural, β‐structural, and helical clusters

Junichi Higo, Narutoshi Kamiya, Jinzen Ikebe, 2007, Protein science : a publication of the Protein Society.

Ab initio simulation of a 57‐residue protein in explicit solvent reproduces the native conformation in the lowest free‐energy cluster

Haruki Nakamura, Junichi Higo, Jinzen Ikebe, 2011, Protein science : a publication of the Protein Society.

Conformational Ensembles of an Intrinsically Disordered Protein pKID with and without a KIX Domain in Explicit Solvent Investigated by All-Atom Multicanonical Molecular Dynamics

Haruki Nakamura, Mitsunori Takano, Junichi Higo, 2012, Biomolecules.

Structure dependency of a 24-residue peptide humanin on solvent and preferential solvation by trifluoroethanol studied by multicanonical sampling

Junichi Higo, Narutoshi Kamiya, Jinzen Ikebe, 2008 .

Conformational sampling of a 40-residue protein consisting of α and β secondary-structure elements in explicit solvent

Haruki Nakamura, Junichi Higo, Narutoshi Kamiya, 2007 .

Conformational requirement on peptides to exert laminin's activities and search for protein segments with laminin's activities

Haruki Nakamura, J. Higo, Jinzen Ikebe, 2009, Biopolymers.

H3 Histone Tail Structure within the Nucleosome and the Impact of the Acetylation

H. Kono, Jinzen Ikebe, S. Sakuraba, 2017 .