J. Amend

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Energetics of potential heterotrophic metabolisms in the marine hydrothermal system of Vulcano Island, Italy

K. Rogers, J. Amend, 2006 .

Necromass as a Limited Source of Energy for Microorganisms in Marine Sediments

J. Amend, D. LaRowe, J. Bradley, 2018 .

Metagenome sequencing and 98 microbial genomes from Juan de Fuca Ridge flank subsurface fluids

J. Amend, S. Jungbluth, M. Rappé, 2017, Scientific Data.

Corrigendum: Metagenome sequencing and 98 microbial genomes from Juan de Fuca Ridge flank subsurface fluids

J. Amend, S. Jungbluth, M. Rappé, 2017, Scientific data.

A Genus Definition for Bacteria and Archaea Based on a Standard Genome Relatedness Index

K. Nealson, G. Garrity, J. Amend, 2020, mBio.

Preservation of martian organic and environmental records: final report of the Mars biosignature working group.

Dawn Y Sumner, Gilles Dromart, David J Des Marais, 2011, Astrobiology.

Organic carbon and microbial activity in marine sediments on a global scale throughout the Quaternary

J. Amend, D. LaRowe, S. Arndt, 2020 .

The Cell and the Sum of Its Parts: Patterns of Complexity in Biosignatures as Revealed by Deep UV Raman Spectroscopy

Luther W. Beegle, Victoria J. Orphan, Rohit Bhartia, 2019, Front. Microbiol..

Energetics of overall metabolic reactions of thermophilic and hyperthermophilic Archaea and bacteria.

J. Amend, E. Shock, E L Shock, 2001, FEMS microbiology reviews.

Identification of organic compounds in ocean basement fluids

J. Amend, D. LaRowe, M. Witt, 2017 .

Nanocalorimetric Characterization of Microbial Activity in Deep Subsurface Oceanic Crustal Fluids

K. Nealson, J. Amend, D. LaRowe, 2016, Front. Microbiol..

Dissolved amino acids in oceanic basaltic basement fluids

J. Amend, D. LaRowe, J. Cowen, 2015 .

The Early Earth vs. the Origin of Life

J. Amend, E. Shock, M. Zolotov, 2000 .

A natural laboratory to study arsenic geobiocomplexity

T. Pichler, R. Price, J. Amend, 2006 .

Catabolic rates, population sizes and doubling/replacement times of microorganisms in natural settings

J. Amend, D. LaRowe, 2015, American Journal of Science.

Energy and carbon metabolisms in a deep terrestrial subsurface fluid microbial community

Michael D. Lee, J. Amend, S. Jungbluth, 2017, The ISME Journal.

Thriving or surviving? Evaluating active microbial guilds in Baltic Sea sediment

B. Jørgensen, J. Amend, K. Lloyd, 2017, Environmental microbiology reports.

Unique Geothermal Chemistry Shapes Microbial Communities on Mt. Erebus, Antarctica

J. Amend, Charles K. Lee, S. Cary, 2022, Frontiers in Microbiology.

Genome Sequence of Hydrogenovibrio sp. Strain SC-1, a Chemolithoautotrophic Sulfur and Iron Oxidizer

K. Nealson, J. Amend, B. Tully, 2018, Genome Announcements.

Nanocalorimetry Reveals the Growth Dynamics of Escherichia coli Cells Undergoing Adaptive Evolution during Long-Term Stationary Phase

J. Amend, S. Finkel, A. Robador, 2019, Applied and Environmental Microbiology.

Bacillus rigiliprofundi sp. nov., an endospore-forming, Mn-oxidizing, moderately halophilic bacterium isolated from deep subseafloor basaltic crust.

J. Amend, J. Sylvan, K. Edwards, 2015, International journal of systematic and evolutionary microbiology.

Thermal and geochemical influences on microbial biogeography in the hydrothermal sediments of Guaymas Basin, Gulf of California.

J. Amend, D. LaRowe, A. Teske, 2016, Environmental microbiology reports.

Geothermobacter hydrogeniphilus sp. nov., a mesophilic, iron(III)-reducing bacterium from seafloor/subseafloor environments in the Pacific Ocean, and emended description of the genus Geothermobacter.

J. Amend, I. Pérez-Rodríguez, Jessica K. Choi, 2021, International journal of systematic and evolutionary microbiology.

In situ electrochemical enrichment and isolation of a magnetite‐reducing bacterium from a high pH serpentinizing spring

A. Okamoto, K. Nealson, J. Amend, 2017, Environmental microbiology.

Isolation and Characterization of Electrochemically Active Subsurface Delftia and Azonexus Species

J. Amend, M. El-Naggar, Yamini Jangir, 2016, bioRxiv.

methyl-coenzyme reductase genes in a deep-subseafloor Archaeoglobi.

B. Woodcroft, P. Evans, J. Amend, 2019 .

Divergent methyl-coenzyme M reductase genes in a deep-subseafloor Archaeoglobi

B. Woodcroft, P. Evans, G. Tyson, 2018, The ISME Journal.

Concentrations, distributions, and energy yields of dissolved neutral aldoses in a shallow hydrothermal vent system of Vulcano, Italy

K. Rogers, J. Amend, A. Skoog, 2007 .

Data Descriptor: Metagenome sequencing and 98 microbial genomes from Juan de Fuca Ridge ﬂ ank subsurface ﬂ uids

J. Amend, S. Jungbluth, M. Rappé, 2017 .

Minireview: demystifying microbial reaction energetics

J. Amend, D. LaRowe, 2019, Environmental microbiology.

Sulfur biogeochemistry : past and present

J. Amend, K. Edwards, T. Lyons, 2004 .

Organic carbon and microbial activity in marine sediments on a global scale throughout the Quaternary

J. Amend, D. LaRowe, S. Arndt, 2020, Geochimica et Cosmochimica Acta.

Genome Sequence of Mariprofundus sp. Strain EBB-1, a Novel Marine Autotroph Isolated from an Iron-Sulfur Mineral

K. Nealson, J. Amend, B. Tully, 2019, Microbiology Resource Announcements.

Spatially resolved capture of hydrogen sulfide from the water column and sedimentary pore waters for abundance and stable isotopic analysis

J. Amend, V. Orphan, D. Fike, 2017 .

Changes in Microbial Energy Metabolism Measured by Nanocalorimetry during Growth Phase Transitions

K. Nealson, J. Amend, S. Finkel, 2018, Front. Microbiol..

Establishment of the Deep Mine Microbial Observatory (DeMMO), South Dakota, USA, a Geochemically Stable Portal Into the Deep Subsurface

J. Amend, M. Osburn, A. Masterson, 2019, Front. Earth Sci..

Genome Sequence of Geothermobacter sp. Strain EPR-M, a Deep-Sea Hydrothermal Vent Iron Reducer

J. Amend, B. Tully, I. Pérez-Rodríguez, 2017, Genome Announcements.

Structure and metabolic potential of the prokaryotic communities from the hydrothermal system of Paleochori Bay, Milos, Greece

V. Pawlowsky-Glahn, J. Egozcue, J. Amend, 2023, Frontiers in Microbiology.

Biogeochemistry of silicious biofilms in geothermal ecosystems

J. Amend, D. Meyer-dombard, E. Shock, 2006 .

Effects of trace element concentrations on culturing thermophiles

J. Amend, D. Meyer-dombard, E. Shock, 2012, Extremophiles.

Archaeal and bacterial communities in geochemically diverse hot springs of Yellowstone National Park, USA

J. Amend, D. Meyer-dombard, E. Shock, 2005 .

Enhanced geochemical gradients in a marine shallow-water hydrothermal system: Unusual arsenic speciation in horizontal and vertical pore water profiles

T. Pichler, R. Price, J. Amend, 2007 .

Processes influencing extreme As enrichment in shallow-sea hydrothermal fluids of Milos Island, Greece

T. Pichler, R. Price, J. Amend, 2013 .

Geochemistry and microbial ecology in alkaline hot springs of Ambitle Island, Papua New Guinea

J. Amend, D. Meyer-dombard, D. Meyer-Dombard, 2014, Extremophiles.

Genomic Description of ‘Candidatus Abyssubacteria,’ a Novel Subsurface Lineage Within the Candidate Phylum Hydrogenedentes

J. Amend, L. Momper, H. Aronson, 2018, Front. Microbiol..

Microbial Arsenic Metabolism and Reaction Energetics

J. Amend, C. Saltikov, Jaime Hernández, 2014 .

Microbial diversity and potential for arsenic and iron biogeochemical cycling at an arsenic rich, shallow-sea hydrothermal vent (Tutum Bay, Papua New Guinea)

J. Amend, D. Meyer-dombard, M. Osburn, 2013 .

Prokaryotic Populations in Arsenic-Rich Shallow-Sea Hydrothermal Sediments of Ambitle Island, Papua New Guinea

T. Pichler, R. Price, J. Amend, 2012 .

Microbial diversity and potential for arsenic and iron biogeochemical cycling at an arsenic rich , shallow-sea hydrothermal vent ( Tutum Bay , Papua New Guinea ) D '

J. Amend, M. Osburn, Arcy R. Meyer-Dombard, 2012 .

The Energetics of Fermentation in Natural Settings

J. Amend, D. LaRowe, 2019, Geomicrobiology Journal.

Energetics of Biomolecule Synthesis on Early Earth

J. Amend, T. McCollom, 2009 .

A thermodynamic assessment of energy requirements for biomass synthesis by chemolithoautotrophic micro‐organisms in oxic and anoxic environments

J. Amend, T. McCollom, 2005 .

Calculation of the standard molal thermodynamic properties of aqueous biomolecules at elevated temperatures and pressures II. Unfolded proteins.

J. Amend, H. Helgeson, 2000, Biophysical chemistry.

Energetics of amino acid synthesis in hydrothermal ecosystems.

J. Amend, E. Shock, E L Shock, 1998, Science.

Calculation of the standard molal thermodynamic properties ofaqueous biomolecules at elevated temperatures and pressures Part1L-α-Amino acids

J. Amend, H. Helgeson, 1997 .

Patterns of in situ Mineral Colonization by Microorganisms in a ~60°C Deep Continental Subsurface Aquifer

R. Bhartia, J. Amend, V. Orphan, 2020, Frontiers in Microbiology.

Determination of volatile fatty acids in the hot springs of Vulcano, Aeolian Islands, Italy

J. Amend, M. Valenza, Andrea C. Amend, 1998 .

The Energetic Potential for Undiscovered Manganese Metabolisms in Nature

J. Amend, D. LaRowe, H. Carlson, 2021, Frontiers in Microbiology.

Quantifying inorganic sources of geochemical energy in hydrothermal ecosystems, Yellowstone National Park, USA

J. Amend, D. Meyer-dombard, E. Shock, 2010 .

Bioenergetic potentials in terrestrial, shallow-sea and deep-sea hydrothermal systems

J. Amend, D. LaRowe, G. Lu, 2021 .

Carbohydrates in thermophile metabolism: calculation of the standard molal thermodynamic properties of aqueous pentoses and hexoses at elevated temperatures and pressures

Andrey V. Plyasunov, J. Amend, Jan P. Amend, 2001 .

Relative stabilities of biomolecules at high temperatures and pressures

J. Amend, H. Helgeson, 1994 .

Group additivity equations of state for calculating the standard molal thermodynamic properties of aqueous organic species at elevated temperatures and pressures.

J. Amend, H. Helgeson, 1997 .

Modeling microbial reaction rates in a submarine hydrothermal vent chimney wall

Andrew W. Dale, Pierre Regnier, Ivan L'Heureux, 2014 .

Methane-Linked Mechanisms of Electron Uptake from Cathodes by Methanosarcina barkeri

P. Girguis, J. Amend, A. Bose, 2018, mBio.

Evolutionary tradeoffs in cellular composition across diverse bacteria

John Doyle, Tori Hoehler, J. Doyle, 2016, The ISME Journal.

Power limits for microbial life

J. Amend, D. LaRowe, 2015, Front. Microbiol..

Microbial Organic Matter Degradation Potential in Baltic Sea Sediments Is Influenced by Depositional Conditions and In Situ Geochemistry

B. Jørgensen, J. Amend, C. Glombitza, 2018, Applied and Environmental Microbiology.

Unique mobile elements and scalable gene flow at the prokaryote–eukaryote boundary revealed by circularized Asgard archaea genomes

I. Antoshechkin, J. Amend, V. Orphan, 2022, Nature Microbiology.

The energetics of organic synthesis inside and outside the cell

J. Amend, E. Shock, D. LaRowe, 2013, Philosophical Transactions of the Royal Society B: Biological Sciences.

Energetics of chemolithoautotrophy in the hydrothermal system of Vulcano Island, southern Italy

K. Rogers, J. Amend, E. Shock, 2003 .

Sources and Fluxes of Organic Carbon and Energy to Microorganisms in Global Marine Sediments

J. Amend, D. LaRowe, S. Arndt, 2022, Frontiers in Microbiology.

Widespread energy limitation to life in global subseafloor sediments

J. Amend, D. LaRowe, S. Arndt, 2020, Science Advances.

Survival of the fewest: Microbial dormancy and maintenance in marine sediments through deep time

J. Amend, D. LaRowe, J. Bradley, 2018, Geobiology.

Metabolism of organic compounds in anaerobic, hydrothermal sulphate-reducing marine sediments.

D. Lovley, J. Amend, J. M. Tor, 2003, Environmental microbiology.

Divergent methyl-coenzyme M reductase genes in a deep-subseafloor Archaeoglobi

B. Woodcroft, P. Evans, G. Tyson, 2018, bioRxiv.

Drivers of Bacterial Maintenance and Minimal Energy Requirements

D. Wolpert, E. Libby, J. Amend, 2017, Front. Microbiol..

The potential for biologically catalyzed anaerobic methane oxidation on ancient Mars.

B. Ehlmann, J. Amend, D. LaRowe, 2014, Astrobiology.

Nitrogen Cycling of Active Bacteria within Oligotrophic Sediment of the Mid-Atlantic Ridge Flank

P. Girguis, J. Amend, D. LaRowe, 2018 .

Alkaline vents and steep Na+ gradients from ridge-flank basalts—Implications for the origin and evolution of life

L. Wehrmann, R. Price, J. Amend, 2017 .

Chemolithotrophy in the continental deep subsurface: Sanford Underground Research Facility (SURF), USA

J. Amend, D. LaRowe, M. Osburn, 2014, Front. Microbiol..

Energetics of Overall Metabolic Reactions of Thermophilic and Hyperthermophilic Archaea and Bacteria

Everett L. Shock, J. Amend, E. Shock, 2001 .

Archaeal diversity and geochemical energy yields in a geothermal well on Vulcano Island, Italy

J. Amend, K. Rogers, Karyn L. Rogers, 2005 .

Archaeal and bacterial diversity in an arsenic-rich shallow-sea hydrothermal system undergoing phase separation

Ryan A. Lesniewski, T. Pichler, R. Price, 2013, Front. Microbiol..

Thermogladius shockii gen. nov., sp. nov., a hyperthermophilic crenarchaeote from Yellowstone National Park, USA

J. Amend, M. Osburn, 2010, Archives of Microbiology.

Temporal changes in fluid chemistry and energy profiles in the vulcano island hydrothermal system.

K. Rogers, J. Amend, S. Gurrieri, 2007, Astrobiology.

Activity and phylogenetic diversity of sulfate-reducing microorganisms in low-temperature subsurface fluids within the upper oceanic crust

Sean P. Jungbluth, Douglas E. LaRowe, R. M. Bowers, 2015, Front. Microbiol..

Contrasting Variable and Stable Subsurface Microbial Populations: an ecological time series analysis from the Deep Mine Microbial Observatory, South Dakota, USA

J. Amend, T. Flynn, M. Osburn, 2020, bioRxiv.

Sulfur and oxygen isotope insights into sulfur cycling in shallow-sea hydrothermal vents, Milos, Greece

R. Price, J. Amend, D. Fike, 2014, Geochemical Transactions.

Subsurface hydrothermal processes and the bioenergetics of chemolithoautotrophy at the shallow-sea vents off Panarea Island (Italy)

T. Pichler, R. Price, F. Italiano, 2015 .

Microbial activity in biogeochemical gradients – new aspects of research

J. Amend, K. Straub, P. Grathwohl, 2005 .

Energy yields from chemolithotrophic metabolisms in igneous basement of the Juan de Fuca ridge flank system

J. Amend, J. Cowen, Huei-Ting Lin, 2013 .

Expanding frontiers in deep subsurface microbiology

J. Amend, A. Teske, 2005 .

Energy Limits for Life in the Subsurface

J. Amend, D. LaRowe, 2019, Deep Carbon.

Catabolic and anabolic energy for chemolithoautotrophs in deep-sea hydrothermal systems hosted in different rock types

Thomas M. McCollom, Wolfgang Bach, J. Amend, 2011 .

Sediment Microbial Communities Influenced by Cool Hydrothermal Fluid Migration

C. Wheat, J. Amend, B. Orcutt, 2018, Front. Microbiol..

Functional Characterization of the Microbial Community in Geothermally Heated Marine Sediments

J. Amend, A. Rusch, 2008, Microbial Ecology.

Another chemolithotrophic metabolism missing in nature: sulfur comproportionation

J. Amend, D. LaRowe, J. Macalady, 2020, Environmental microbiology.

Another chemolithotrophic metabolism missing in nature—sulfur comproportionation

J. Amend, D. LaRowe, J. Macalady, 2019, bioRxiv.

Life at Subseafloor Extremes

Kentaro Nakamura, J. Amend, D. LaRowe, 2014 .

Novel nitrite reductase domain structure suggests a chimeric denitrification repertoire in the phylum Chloroflexi

J. Amend, L. T. Rangel, C. Magnabosco, 2022, MicrobiologyOpen.

Energy sources for chemolithotrophs in an arsenic‐ and iron‐rich shallow‐sea hydrothermal system

T. Pichler, R. Price, J. Amend, 2011, Geobiology.

Rectinema subterraneum sp. nov, a chemotrophic spirochaete isolated from the deep terrestrial subsurface.

J. Amend, H. Imachi, M. Miyazaki, 2020, International journal of systematic and evolutionary microbiology.

Major phylum‐level differences between porefluid and host rock bacterial communities in the terrestrial deep subsurface

J. Amend, G. Wanger, D. Moser, 2017, Environmental microbiology reports.

Thermodynamic limitations on microbially catalyzed reaction rates

Andrew W. Dale, Douglas E. LaRowe, Philippe Van Cappellen, 2012 .

Inorganic chemistry, gas compositions and dissolved organic carbon in fluids from sedimented young basaltic crust on the Juan de Fuca Ridge flanks

M. Lilley, E. Olson, J. Amend, 2012 .

Order-specific 16S rRNA-targeted oligonucleotide probes for (hyper)thermophilic archaea and bacteria

J. Amend, A. Rusch, 2004, Extremophiles.

Concentration and distribution of dissolved amino acids in a shallow hydrothermal system, Vulcano Island (Italy)

J. Amend, A. Skoog, Elisabeth Svensson, 2004 .

Burkholderia insulsa sp. nov., a facultatively chemolithotrophic bacterium isolated from an arsenic-rich shallow marine hydrothermal system.

J. Amend, A. Rusch, P. Savalia, 2015, International journal of systematic and evolutionary microbiology.

Sulfur disproportionating microbial communities in a dynamic, microoxic-sulfidic karst system

J. Amend, D. LaRowe, J. Macalady, 2023, bioRxiv.

Electrochemical evidence for in situ microbial activity at the Deep Mine Microbial Observatory (DeMMO), South Dakota, USA

J. Amend, A. Rowe, M. Osburn, 2020, Geobiology.

In Situ Electrochemical Studies of the Terrestrial Deep Subsurface Biosphere at the Sanford Underground Research Facility, South Dakota, USA

J. Amend, C. Anderson, G. Wanger, 2019, bioRxiv.

Metastable Iron (Mono)sulfides in the Shallow-Sea Hydrothermal Sediments of Milos, Greece

R. Price, J. Amend, E. Kotopoulou, 2022, ACS Earth and Space Chemistry.

Temperature and volume of global marine sediments

J. Amend, D. LaRowe, S. Arndt, 2017 .

IODP Deep Biosphere Research Workshop report - a synthesis of recent investigations, and discussion of new research questions and drilling targets

Heath J. Mills, Julie A. Huber, Beth N. Orcutt, 2014 .

Microbial communities near the oxic/anoxic interface in the hydrothermal system of Vulcano Island, Italy

J. Amend, S. Gurrieri, E. Walpersdorf, 2005 .

Novel nitrite reductase domain structure suggests a chimeric denitrification repertoire in Phylum Chloroflexi

J. Amend, L. T. Rangel, C. Magnabosco, 2021 .

A "follow the energy" approach for astrobiology.

J. Amend, E. Shock, T. Hoehler, 2007, Astrobiology.

Organic carbon and microbial activity in marine sediments on a global scale throughout 1 the Quaternary 2 3

J. Amend, D. LaRowe, S. Arndt, 2019 .

13. Energetic constraints on life in marine deep sediments

J. Amend, D. LaRowe, Jan P. Amend, 2014 .

Solubilities of the common L-α-amino acids as a function of temperature and solution pH

J. Amend, J. P. Amend, H. C. Helgeson, 1997 .

The energetics of anabolism in natural settings

J. Amend, D. LaRowe, 2016, The ISME Journal.

Spatially and temporally variable sulfur cycling in shallow-sea hydrothermal vents, Milos, Greece

J. Amend, D. Fike, A. Godelitsas, 2019, Marine Chemistry.

Bioenergetic Controls on Microbial Ecophysiology in Marine Sediments

J. Amend, D. LaRowe, J. Bradley, 2018, Front. Microbiol..

Amorphous As-sulfide precipitates from the shallow-water hydrothermal vents off Milos Island (Greece)

T. Pichler, R. Price, J. Amend, 2015 .

Geochemistry and microbial ecology in alkaline hot springs of Ambitle Island, Papua New Guinea

J. Amend, D. Meyer-Dombard, 2014, Extremophiles.

Well-hidden methanogenesis in deep, organic-rich sediments of Guaymas Basin.

B. Baker, J. Amend, D. LaRowe, 2023, The ISME journal.

Bioenergetic characterization of a shallow-sea hydrothermal vent system: Milos Island, Greece

R. Price, J. Amend, D. LaRowe, 2020, PloS one.

Submarine Hydrothermal Vents of the Aeolian Islands: Relationship Between Microbial Communities and Thermal Fluids

Salvatore Inguaggiato, Francesco Italiano, F. Italiano, 1999 .

Palaeococcus helgesonii sp. nov., a facultatively anaerobic, hyperthermophilic archaeon from a geothermal well on Vulcano Island, Italy

J. Amend, S. Sheth, N. Zolotova, 2003, Archives of Microbiology.

Thiovibrio frasassiensis gen. nov., sp. nov., an autotrophic, elemental sulphur disproportionating bacterium isolated from sulphidic karst sediment, and proposal of Thiovibrionaceae fam. nov.

J. Amend, J. Macalady, R. Barco, 2023, International journal of systematic and evolutionary microbiology.

The potential for biologically catalyzed anaerobic methane oxidation on ancient Mars.

B. Ehlmann, J. Amend, D. LaRowe, 2014, Astrobiology.

Sulfur disproportionation is exergonic in the vicinity of marine hydrothermal vents.

J. Amend, K. Alain, Maxime Allioux, 2022, Environmental microbiology.

Thiovibrio frasassiensis gen. nov., sp. nov., an autotrophic, elemental sulfur disproportionating bacterium isolated from sulfidic karst sediment, and proposal of Thiovibrionaceae fam. nov.

J. Amend, M. Bhattacharyya, J. Macalady, 2022, bioRxiv.

Genome Sequence of Geothermobacter sp. Strain HR-1, an Iron Reducer from the Lō‘ihi Seamount, Hawai’i

J. Amend, B. Tully, D. Emerson, 2018, Genome Announcements.