J. Ray

发表

Bistable responses in bacterial genetic networks: designs and dynamical consequences.

O. Igoshin, Abhinav Tiwari, J. Ray, 2011, Mathematical biosciences.

Non-transcriptional regulatory processes shape transcriptional network dynamics

Oleg A. Igoshin, J. Christian J. Ray, Jeffrey J. Tabor, 2011, Nature Reviews Microbiology.

Lineage space and the propensity of bacterial cells to undergo growth transitions

J. Ray, A. Bandyopadhyay, Huijing Wang, 2018 .

Survival of Phenotypic Information during Cellular Growth Transitions

J. Ray, 2016, ACS synthetic biology.

Stress-response balance drives the evolution of a network module and its host genome

M. Manhart, A. Morozov, G. Balázsi, 2015, Molecular systems biology.

Dynamical predictors of an imminent phenotypic switch in bacteria

J. Ray, Huijing Wang, 2017, bioRxiv.

Diversity in lac Operon Regulation among Diverse Escherichia coli Isolates Depends on the Broader Genetic Background but Is Not Explained by Genetic Relatedness

Gábor Balázsi, J. Christian J. Ray, Tim F. Cooper, 2019, mBio.

A novel metric reveals previously unrecognized distortion in dimensionality reduction of scRNA-seq data

Eric J. Deeds, J. Christian J. Ray, Shamus M. Cooley, 2019, bioRxiv.

Synergy between Individual TNF-Dependent Functions Determines Granuloma Performance for Controlling Mycobacterium tuberculosis Infection1

J. Christian J. Ray, Denise E. Kirschner, JoAnne L. Flynn, 2009, The Journal of Immunology.

Amino acid positions subject to multiple coevolutionary constraints can be robustly identified by their eigenvector network centrality scores

Liskin Swint-Kruse, J Christian J Ray, J. Ray, 2015, Proteins.

Interplay of Gene Expression Noise and Ultrasensitive Dynamics Affects Bacterial Operon Organization

Oleg A. Igoshin, J. Christian J. Ray, O. Igoshin, 2012, PLoS Comput. Biol..

Cellular Growth Arrest and Persistence from Enzyme Saturation

Gábor Balázsi, J. Christian J. Ray, Tim F. Cooper, 2016, PLoS Comput. Biol..

Adaptive Evolution of the Lactose Utilization Network in Experimentally Evolved Populations of Escherichia coli

Gábor Balázsi, J. Christian J. Ray, Tim F. Cooper, 2012, PLoS genetics.

Adaptable Functionality of Transcriptional Feedback in Bacterial Two-Component Systems

Oleg A. Igoshin, J. Christian J. Ray, J. C. Ray, 2010, PLoS Comput. Biol..

Lineage space and the propensity of bacterial cells to undergo growth transitions

Arnab Bandyopadhyay, Huijing Wang, J Christian J Ray, 2018, bioRxiv.

The timing of TNF and IFN-gamma signaling affects macrophage activation strategies during Mycobacterium tuberculosis infection.

John Chan, Jian Wang, J Christian J Ray, 2008, Journal of theoretical biology.

Requirement for multiple activation signals by anti-inflammatory feedback in macrophages.

J Christian J Ray, Denise E Kirschner, D. Kirschner, 2006, Journal of theoretical biology.

Overlapping stimulons arising in response to divergent stresses in Escherichia coli

J. Ray, Huijing Wang, Andrew D Hecht, 2021, bioRxiv.

A framework for evaluating edited cell libraries created by massively parallel genome engineering

Andrea L. Halweg-Edwards, D. Church, S. Cawley, 2021, bioRxiv.

Stress-response balance drives the evolution of a network module and its host genome

A. Morozov, G. Balázsi, R. Adams, 2015 .

Stress-response balance drives the evolution of a network module and its host genome

A. Morozov, G. Balázsi, R. Adams, 2015 .

Mathematical and Computational Analyses of Immunological Signaling Networks Affecting Mycobacterium tuberculosis Infection.

J. Ray, 2008 .