V. Kaberdin

发表

Functional effects of variants of the RNA chaperone Hfq.

E. Sonnleitner, Johanna Napetschnig, T. Afonyushkin, 2004, Biochemical and biophysical research communications.

Both RNase E and RNase III control the stability of sodB mRNA upon translational inhibition by the small regulatory RNA RyhB

T. Afonyushkin, B. Večerek, I. Moll, 2005, Nucleic acids research.

Translation initiation and the fate of bacterial mRNAs.

V. Kaberdin, U. Bläsi, 2006, FEMS microbiology reviews.

A comparison of key aspects of gene regulation in Streptomyces coelicolor and Escherichia coli using nucleotide-resolution transcription maps produced in parallel by global and differential RNA sequencing

G. V. van Wezel, V. Kaberdin, L. Mamanova, 2014, Molecular microbiology.

The Effect of Visible Light on Cell Envelope Subproteome during Vibrio harveyi Survival at 20 °C in Seawater

V. Kaberdin, I. Arana, M. Orruño, 2021, Microorganisms.

Survival of Escherichia coli under Nutrient-Deprived Conditions: Effect on Cell Envelope Subproteome

V. Kaberdin, I. Arana, M. Orruño, 2017 .

Changes in the Vibrio harveyi Cell Envelope Subproteome During Permanence in Cold Seawater

V. Kaberdin, I. Arana, I. Barcina, 2016, Microbial Ecology.

Temperature-dependent stability and translation of Escherichia coli ompA mRNA.

T. Afonyushkin, I. Moll, V. Kaberdin, 2003, Biochemical and biophysical research communications.

Revisiting CARD-FISH for Detection of Vibrio spp. in Natural Seawater

V. Kaberdin, I. Arana, M. Orruño, 2020 .

RNA components of Escherichia coli degradosome: evidence for rRNA decay.

C. L. Wei, V. Kaberdin, S. Lin-Chao, 1998, Proceedings of the National Academy of Sciences of the United States of America.

RNase E Cleaves at Multiple Sites in Bubble Regions of RNA I Stem Loops Yielding Products That Dissociate Differentially from the Enzyme*

V. Kaberdin, S. Lin-Chao, Y. Chao, 1996, The Journal of Biological Chemistry.

Defining the transcription landscape of the Gram-negative marine bacterium Vibrio harveyi.

V. Kaberdin, P. Pearman, Ander Hernández Plágaro, 2019, Genomics.

Isolation of Pseudomonas fluorescens species highly resistant to pentachlorobenzene

V. Kaberdin, S. Rodríguez-Couto, A. Kaberdina, 2017, Folia Microbiologica.

Composition and conservation of the mRNA-degrading machinery in bacteria

V. Kaberdin, S. Lin-Chao, Dharam Singh, 2011, Journal of Biomedical Science.

Survival strategies of Escherichia coli and Vibrio spp.: contribution of the viable but nonculturable phenotype to their stress-resistance and persistence in adverse environments

V. Kaberdin, I. Arana, M. Orruño, 2017, World journal of microbiology & biotechnology.

Efficiency and specificity of CARD-FISH probes in detection of marine vibrios.

V. Kaberdin, I. Arana, M. Orruño, 2021, Environmental microbiology reports.

Enhanced cleavage of RNA mediated by an interaction between substrates and the arginine-rich domain of E. coli ribonuclease E.

V. Kaberdin, A. Gabain, K. J. McDowall, 2000, Journal of molecular biology.

Analysis of Acinetobacter baumannii survival in liquid media and on solid matrices as well as effect of disinfectants.

V. Kaberdin, I. Arana, J. Ramos-Vivas, 2019, The Journal of hospital infection.

Quaternary structure and biochemical properties of mycobacterial RNase E/G.

V. Kaberdin, Á. Csanádi, T. Bizebard, 2007, The Biochemical journal.

Quaternary structure and biochemical properties of mycobacterial

V. Kaberdin, Á. Csanádi, T. Bizebard, 2007 .

Analysis of laccase‐like enzymes secreted by fungi isolated from a cave in northern Spain

V. Kaberdin, J. M. García‐Lobo, R. Estrada-Tejedor, 2022, MicrobiologyOpen.

Unveiling the Metabolic Pathways Associated with the Adaptive Reduction of Cell Size During Vibrio harveyi Persistence in Seawater Microcosms

V. Kaberdin, I. Arana, I. Barcina, 2015, Microbial Ecology.

Vibrio harveyi: A brief survey of general characteristics and recent epidemiological traits associated with climate change.

V. Kaberdin, I. Montánchez, 2020, Marine environmental research.

Analysis of Vibrio harveyi adaptation in sea water microcosms at elevated temperature provides insights into the putative mechanisms of its persistence and spread in the time of global warming

V. Kaberdin, I. Arana, J. Gómez-Garrido, 2019, Scientific Reports.

Assessing pH‐dependent activities of virulence factors secreted by Candida albicans

V. Kaberdin, G. Quindós, E. Sevillano, 2023, MicrobiologyOpen.

Reprogramming of gene expression in Escherichia coli cultured on pyruvate versus glucose

V. Kaberdin, S. Lin-Chao, A. Kaberdina, 2019, Molecular Genetics and Genomics.

Cleavage of poly(A) tails on the 3'-end of RNA by ribonuclease E of Escherichia coli.

V. Kaberdin, K. J. McDowall, A. von Gabain, 2001, Nucleic acids research.

Proteins associated with RNase E in a multicomponent ribonucleolytic complex.

V. Kaberdin, S. Lin-Chao, A. Miczak, 1996, Proceedings of the National Academy of Sciences of the United States of America.

Expanding the use of zymography by the chemical linkage of small, defined substrates to the gel matrix.

V. Kaberdin, K. J. McDowall, K. McDowall, 2003, Genome research.

A new custom microarray for sRNA profiling in Escherichia coli.

V. Kaberdin, E. Hajnsdorf, Olatz Ruiz-Larrabeiti, 2016, FEMS microbiology letters.

The endoribonucleolytic N-terminal half of Escherichia coli RNase E is evolutionarily conserved in Synechocystis sp. and other bacteria but not the C-terminal half, which is sufficient for degradosome assembly.

V. Kaberdin, S. Lin-Chao, A. Gabain, 1998, Proceedings of the National Academy of Sciences of the United States of America.

RNA polyadenylation and its consequences in prokaryotes

V. Kaberdin, E. Hajnsdorf, 2018, Philosophical Transactions of the Royal Society B: Biological Sciences.

NAD+ capping of RNA in Archaea and Mycobacteria

V. Kaberdin, L. Krásný, Hana Cahová, 2021, bioRxiv.

Coincident Hfq binding and RNase E cleavage sites on mRNA and small regulatory RNAs.

T. Afonyushkin, I. Moll, V. Kaberdin, 2003, RNA.

Combined Transcriptomic and Proteomic Profiling of E. coli under Microaerobic versus Aerobic Conditions: The Multifaceted Roles of Noncoding Small RNAs and Oxygen-Dependent Sensing in Global Gene Expression Control

V. Kaberdin, S. Lin-Chao, G. Liou, 2022, International journal of molecular sciences.

Characterization of Aquifex aeolicus RNase E/G.

V. Kaberdin, T. Bizebard, 2005, Biochemical and biophysical research communications.

Regulation of ribonuclease E activity by the L4 ribosomal protein of Escherichia coli

V. Kaberdin, Pei-Hsun Lin, S. Lin-Chao, 2009, Proceedings of the National Academy of Sciences.

The long-term survival of Acinetobacter baumannii ATCC 19606T under nutrient-deprived conditions does not require the entry into the viable but non-culturable state

V. Kaberdin, I. Arana, I. Barcina, 2016, Archives of Microbiology.

Site-specific RNase E cleavage of oligonucleotides and inhibition by stem–loops

Stanley N Cohen, V. Kaberdin, S. Lin-Chao, 1995, Nature.

Mycobacterial RNase E‐Associated Proteins

V. Kaberdin, Á. Csanádi, A. Miczak, 2005, Microbiology and immunology.

mRNA Stability

V. Kaberdin, 2020, eLS.

Survival strategies of Escherichia coli and Vibrio spp.: contribution of the viable but nonculturable phenotype to their stress-resistance and persistence in adverse environments

V. Kaberdin, I. Arana, M. Orruño, 2017, World journal of microbiology & biotechnology.

Reprogramming of Vibrio harveyi gene expression during adaptation in cold seawater.

V. Kaberdin, I. Arana, I. Barcina, 2014, FEMS microbiology ecology.

Translational activation by the noncoding RNA DsrA involves alternative RNase III processing in the rpoS 5'-leader.

T. Afonyushkin, V. Kaberdin, U. Bläsi, 2008, RNA.

Interaction of the RNA chaperone Hfq with mRNAs: direct and indirect roles of Hfq in iron metabolism of Escherichia coli

Branislav Vecerek, Isabella Moll, Udo Bläsi, 2003, Molecular microbiology.

Hfq (HF1) stimulates ompA mRNA decay by interfering with ribosome binding.

I. Moll, V. Kaberdin, U. Bläsi, 2000, Genes & development.

Translation initiationand the fate of bacterialmRNAs

V. Kaberdin, U. Bläsi, 2006 .

RNA processing in Aquifex aeolicus involves RNase E/G and an RNase P-like activity.

V. Kaberdin, T. Lombo, 2008, Biochemical and biophysical research communications.

Translation initiation factor a/eIF2(-γ) counteracts 5′ to 3′ mRNA decay in the archaeon Sulfolobus solfataricus

V. Kaberdin, U. Bläsi, P. Londei, 2008, Proceedings of the National Academy of Sciences.

The AGUAAA motif in cspA1/A2 mRNA is important for adaptation of Yersinia enterocolitica to grow at low temperature

V. Kaberdin, K. Neuhaus, S. Scherer, 2003, Molecular microbiology.

Characterization of the structure and melting behavior of the loop I fragment of ColE1 RNA I.

V. Kaberdin, S. Lin-Chao, H. Lin, 1996, Journal of biomolecular structure & dynamics.

The long-term survival of Acinetobacter baumannii ATCC 19606T under nutrient-deprived conditions does not require the entry into the viable but non-culturable state

V. Kaberdin, I. Arana, I. Barcina, 2016, Archives of Microbiology.

Distinct and overlapping binding sites of Pseudomonas aeruginosa Hfq and RsmA proteins on the non-coding RNA RsmY.

E. Sonnleitner, V. Kaberdin, U. Bläsi, 2007, Biochemical and biophysical research communications.

Unveiling the Metabolic Pathways Associated with the Adaptive Reduction of Cell Size During Vibrio harveyi Persistence in Seawater Microcosms

V. Kaberdin, I. Arana, I. Barcina, 2015, Microbial Ecology.

Addressing the Joint Impact of Temperature and pH on Vibrio harveyi Adaptation in the Time of Climate Change

V. Kaberdin, H. Eguiraun, I. Arana, 2023, Microorganisms.

Analysis of Vibrio harveyi adaptation in sea water microcosms at elevated temperature provides insights into the putative mechanisms of its persistence and spread in the time of global warming

V. Kaberdin, I. Arana, J. Gómez-Garrido, 2019, Scientific Reports.

Changes in the Vibrio harveyi Cell Envelope Subproteome During Permanence in Cold Seawater

V. Kaberdin, I. Arana, I. Barcina, 2016, Microbial Ecology.

Effects of abiotic and biotic factors on Vibrio harveyi ATCC 14126T survival dynamics in seawater microcosms

V. Kaberdin, I. Arana, M. Orruño, 2019, Aquatic Microbial Ecology.

Determination of the Catalytic Parameters of the N-terminal Half of Escherichia coli Ribonuclease E and the Identification of Critical Functional Groups in RNA Substrates*

V. Kaberdin, J. Grasby, C. Adams, 2003, Journal of Biological Chemistry.

Bacterial helicases in post-transcriptional control.

V. Kaberdin, U. Bläsi, 2013, Biochimica et biophysica acta.

Membrane binding of Escherichia coli RNase E catalytic domain stabilizes protein structure and increases RNA substrate affinity

V. Kaberdin, S. Lin-Chao, Oleg N. Murashko, 2012, Proceedings of the National Academy of Sciences.

[An effective method for site-directed mutagenesis in plasmids and cloning single-stranded DNA fragments].

V. Kaberdin, O. Koroleva, V. Drutsa, 1991, Bioorganicheskaia khimiia.

Sodium Fluoride Exposure Leads to ATP Depletion and Altered RNA Decay in Escherichia coli under Anaerobic Conditions

V. Kaberdin, S. Lin-Chao, Oleg N. Murashko, 2023, Microbiology spectrum.

Use of oligonucleotides and nick translation for site-directed mutagenesis in plasmids.

V. Kaberdin, Drutsa Vl, 1992, Nucleic acids research.

Reprogramming of gene expression in Escherichia coli cultured on pyruvate versus glucose

V. Kaberdin, S. Lin-Chao, A. Kaberdina, 2019, Molecular Genetics and Genomics.

Unraveling new roles for minor components of the E. coli RNA degradosome

V. Kaberdin, S. Lin-Chao, 2009, RNA biology.