Seoae Cho

Seoae Cho, Woori Kwak, D. Kang, 2017, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

Enhanced Symbiotic Characteristics in Bacterial Genomes with the Disruption of rRNA Operon

Heebal Kim, Hyeonju Ahn, Seoae Cho, 2020, Biology.

Investigation of De Novo Unique Differentially Expressed Genes Related to Evolution in Exercise Response during Domestication in Thoroughbred Race Horses

Heebal Kim, Seoae Cho, Jaemin Kim, 2014, PloS one.

Joint Identification of Multiple Genetic Variants of Obesity in a Korean Genome-wide Association Study

T. Park, Seoae Cho, Sohee Oh, 2010 .

Single high-dose irradiation aggravates eosinophil-mediated fibrosis through IL-33 secreted from impaired vessels in the skin compared to fractionated irradiation.

Seoae Cho, Yoon-Jin Lee, Woori Kwak, 2015, Biochemical and biophysical research communications.

Organization and evolution of mitochondrial gene clusters in human.

Heebal Kim, Seoae Cho, Sunjin Moon, 2008, Genomics.

In silico SARS-CoV-2 vaccine development for Omicron strain using reverse vaccinology

Heebal Kim, Seoae Cho, Chul Lee, 2022, Genes & Genomics.

A set of stage-specific gene transcripts identified in EK stage X and HH stage 3 chick embryos

Heebal Kim, T. Park, Seoae Cho, 2007, BMC Developmental Biology.

Investigation of memory-enhancing effects of Streptococcus thermophilus EG007 in mice and elucidating molecular and metagenomic characteristics using nanopore sequencing

Heebal Kim, Seoae Cho, Jinchul Jo, 2022, Scientific Reports.

False gene and chromosome losses in genome assemblies caused by GC content variation and repeats

R. Durbin, A. Phillippy, K. Howe, 2022, Genome Biology.

Comparative transcriptomic analysis to identify differentially expressed genes in fat tissue of adult Berkshire and Jeju Native Pig using RNA-seq

Sang Pyo Hong, N. Sharma, Heebal Kim, 2014, Molecular Biology Reports.

Methanobrevibacter attenuation via probiotic intervention reduces flatulence in adult human: A non-randomised paired-design clinical trial of efficacy

Heebal Kim, Joon Yoon, Seoae Cho, 2017, PloS one.

Darkness and gulliver2/phyB mutation decrease the abundance of phosphorylated BZR1 to activate brassinosteroid signaling in Arabidopsis

T. Park, Seoae Cho, S. Fujioka, 2014, The Plant journal : for cell and molecular biology.

Native Pig and Chicken Breed Database: NPCDB

Heebal Kim, Seoae Cho, Samsun Sung, 2014, Asian-Australasian journal of animal sciences.

Genome-wide analysis of copy number variations reveals that aging processes influence body fat distribution in Korea Associated Resource (KARE) cohorts

Heebal Kim, Seoae Cho, K. Seo, 2012, Human Genetics.

Deleted copy number variation of Hanwoo and Holstein using next generation sequencing at the population level

Heebal Kim, Seoae Cho, Hyun-Jeong Lee, 2014, BMC Genomics.

African Indigenous Cattle: Unique Genetic Resources in a Rapidly Changing World

O. Hanotte, Seoae Cho, O. Mwai, 2015, Asian-Australasian journal of animal sciences.

The genome landscape of indigenous African cattle

O. Hanotte, Heebal Kim, Seoae Cho, 2017, Genome Biology.

Explorer The genome landscape of indigenous African cattle

O. Hanotte, Heebal Kim, Seoae Cho, 2017 .

Exploring evidence of positive selection signatures in cattle breeds selected for different traits

O. Hanotte, Heebal Kim, Joon Yoon, 2017, Mammalian Genome.

Whole genome scan reveals the genetic signature of African Ankole cattle breed and potential for higher quality beef

O. Hanotte, Heebal Kim, Seoae Cho, 2017, BMC Genetics.

The mosaic genome of indigenous African cattle as a unique genetic resource for African pastoralism

Choongwon Jeong, O. Hanotte, Heebal Kim, 2020, Nature Genetics.

Whole genome detection of signature of positive selection in African cattle reveals selection for thermotolerance.

O. Hanotte, Heebal Kim, Seoae Cho, 2017, Animal science journal = Nihon chikusan Gakkaiho.

Analysis of copy number variation in 8,842 Korean individuals reveals 39 genes associated with hepatic biomarkers AST and ALT.

Heebal Kim, Seoae Cho, Samsun Sung, 2010, BMB reports.

Microbial Identification Using rRNA Operon Region: Database and Tool for Metataxonomics with Long-Read Sequence

Seoae Cho, Woori Kwak, Samsun Sung, 2022, Microbiology spectrum.

Exploring the genomes of East African Indicine cattle breeds reveals signature of selection for tropical environmental adaptation traits

Heebal Kim, Seoae Cho, H. Lee, 2018 .

Gut microbiota Modulated by Probiotics and Garcinia cambogia Extract Correlate with Weight Gain and Adipocyte Sizes in High Fat-Fed Mice

Heebal Kim, Hyeonju Ahn, Joon Yoon, 2016, Scientific Reports.

Complete Genome Sequence of the Newly Developed Lactobacillus acidophilus Strain With Improved Thermal Adaptability

Heebal Kim, Seoae Cho, M. Seo, 2021, Frontiers in Microbiology.

Comparative genomic analysis of Lactobacillus plantarum GB-LP4 and identification of evolutionarily divergent genes in high-osmolarity environment

Seoae Cho, Woori Kwak, D. Kang, 2017, Genes & Genomics.

Genetic variants and signatures of selective sweep of Hanwoo population (Korean native cattle)

Heebal Kim, Seoae Cho, Taeheon Lee, 2013, BMB reports.

Whole genome sequencing of Gyeongbuk Araucana, a newly developed blue-egg laying chicken breed, reveals its origin and genetic characteristics

Heebal Kim, Seoae Cho, J. Ha, 2016, Scientific Reports.

Rules of amino acid convergence: Not how many, but who in avian vocal learning clades

Andreas R. Pfenning, E. Jarvis, M. Rivas, 2020 .

Genetic and phenotypic characterization of the novel mouse substrain C57BL/6N Korl with increased body weight

Seoae Cho, S. Chung, Kwondo Kim, 2017, Scientific Reports.

Positive Effect of Lactobacillus acidophilus EG004 on Cognitive Ability of Healthy Mice by Fecal Microbiome Analysis Using Full-Length 16S-23S rRNA Metagenome Sequencing

Seoae Cho, Heebal Kim, Jinchul Jo, 2022, Microbiology spectrum.

A novel genetic variant database for Korean native cattle (Hanwoo): HanwooGDB

Heebal Kim, Seoae Cho, Woori Kwak, 2014, Genes & Genomics.

Comparative Transcriptome Analysis of Adipose Tissues Reveals that ECM-Receptor Interaction Is Involved in the Depot-Specific Adipogenesis in Cattle

Seoae Cho, Woori Kwak, J. Jeong, 2013, PloS one.

Neuronal Genes for Subcutaneous Fat Thickness in Human and Pig Are Identified by Local Genomic Sequencing and Combined SNP Association Study

J. Ott, Heebal Kim, Sang-Haeng Choi, 2011, PloS one.

Cattle genome-wide analysis reveals genetic signatures in trypanotolerant N’Dama

Jung-Woo Ha, O. Hanotte, Heebal Kim, 2017, BMC Genomics.

Explorer Cattle genome-wide analysis reveals genetic signatures in trypanotolerant

O. Hanotte, Heebal Kim, Seoae Cho, 2017 .

Genome-wide DNA Methylation Profiles of Small Intestine and Liver in Fast-growing and Slow-growing Weaning Piglets

Heebal Kim, Seoae Cho, Woori Kwak, 2014, Asian-Australasian journal of animal sciences.

Ubiquitous Polygenicity of Human Complex Traits: Genome-Wide Analysis of 49 Traits in Koreans

Bok-Ghee Han, Jian Yang, Seoae Cho, 2013, PLoS genetics.

Peeling Back the Evolutionary Layers of Molecular Mechanisms Responsive to Exercise-Stress in the Skeletal Muscle of the Racing Horse

Seungwoo Hwang, J. Bhak, Hak-Min Kim, 2013, DNA research : an international journal for rapid publication of reports on genes and genomes.

False gene and chromosome losses affected by assembly and sequence errors

R. Durbin, A. Phillippy, K. Howe, 2021, bioRxiv.

Widespread false gene gains caused by duplication errors in genome assemblies

K. Howe, E. Jarvis, A. Rhie, 2021, bioRxiv.

Differential Evolution between Monotocous and Polytocous Species

Heebal Kim, Hyeonju Ahn, Kyu-Won Kim, 2014, Asian-Australasian journal of animal sciences.

Transcriptome profiling of differentially expressed genes in floral buds and flowers of male sterile and fertile lines in watermelon

Seoae Cho, Sun-Ju Rhee, Yoon-Jeong Jang, 2015, BMC Genomics.

A genome-wide scan for signatures of directional selection in domesticated pigs

R. Nielsen, M. Groenen, Namshin Kim, 2015, BMC Genomics.

Genetic Traceability of Black Pig Meats Using Microsatellite Markers

Seoae Cho, H. Lee, K. Song, 2014, Asian-Australasian journal of animal sciences.

Genome-wide Association Study of Integrated Meat Quality-related Traits of the Duroc Pig Breed

Heebal Kim, Seoae Cho, Taeheon Lee, 2014, Asian-Australasian journal of animal sciences.

The Genetic Origin of Short Tail in Endangered Korean Dog, DongGyeongi

Heebal Kim, Seoae Cho, D. Lim, 2017, Scientific Reports.

Exploring evidence of positive selection reveals genetic basis of meat quality traits in Berkshire pigs through whole genome sequencing

Heebal Kim, Seoae Cho, Jaemin Kim, 2015, BMC Genetics.

Auxin stimulates DWARF4 expression and brassinosteroid biosynthesis in Arabidopsis.

T. Park, Seoae Cho, S. Fujioka, 2011, The Plant journal : for cell and molecular biology.

Comprehensive Identification of Sexual Dimorphism-Associated Differentially Expressed Genes in Two-Way Factorial Designed RNA-Seq Data on Japanese Quail (Coturnix coturnix japonica)

Heebal Kim, S. Rodriguez-Zas, Seoae Cho, 2015, PloS one.

Cetaceans evolution: insights from the genome sequences of common minke whales

D. Burt, Kyu-Won Kim, Seoae Cho, 2015, BMC Genomics.

Copy Number Deletion Has Little Impact on Gene Expression Levels in Racehorses

Seoae Cho, Jaemin Kim, H. Lee, 2014, Asian-Australasian journal of animal sciences.

Genome-wide association study of copy number variations associated with pulmonary function measures in Korea Associated Resource (KARE) cohorts.

Heebal Kim, Seoae Cho, Bo-Young Lee, 2011, Genomics.

HGTree v2.0: a comprehensive database update for horizontal gene transfer (HGT) events detected by the tree-reconciliation method

Heebal Kim, Seoae Cho, Saetbyeol Lee, 2022, Nucleic Acids Res..

Metagenome Analysis of Protein Domain Collocation within Cellulase Genes of Goat Rumen Microbes

Heebal Kim, Seoae Cho, Sooyeon Lim, 2013, Asian-Australasian journal of animal sciences.

Mitonuclear incompatibility as a hidden driver behind the genome ancestry of African admixed cattle

Choongwon Jeong, O. Hanotte, Heebal Kim, 2022, BMC biology.

Prediction of Genes Related to Positive Selection Using Whole-Genome Resequencing in Three Commercial Pig Breeds

Heebal Kim, Seoae Cho, K. Seo, 2015, Genomics & informatics.

Genome sequence of pacific abalone (Haliotis discus hannai): the first draft genome in family Haliotidae

Heebal Kim, Joon Yoon, Seoae Cho, 2017, GigaScience.

Evolutionary constraints over microsatellite abundance in larger mammals as a potential mechanism against carcinogenic burden

Heebal Kim, Seoae Cho, Jaemin Kim, 2016, Scientific Reports.

Thoroughbred Horse Single Nucleotide Polymorphism and Expression Database: HSDB

Heebal Kim, Seoae Cho, Woori Kwak, 2014, Asian-Australasian journal of animal sciences.

Genome-wide Association Study of Chicken Plumage Pigmentation

Heebal Kim, Kyung-Tai Lee, Seoae Cho, 2013, Asian-Australasian journal of animal sciences.

A novel genetic variant database for Korean native cattle (Hanwoo): HanwooGDB

Heebal Kim, Seoae Cho, Woori Kwak, 2014, Genes & Genomics.

Deciphering signature of selection affecting beef quality traits in Angus cattle

Heebal Kim, Joon Yoon, Seoae Cho, 2017, Genes & Genomics.

Detecting Positive Selection of Korean Native Goat Populations Using Next-Generation Sequencing

Heebal Kim, Seoae Cho, Samsun Sung, 2016, Molecules and cells.

Time-Calibrated Phylogenomics of the Classical Swine Fever Viruses: Genome-Wide Bayesian Coalescent Approach

Heebal Kim, Kyu-Won Kim, Seoae Cho, 2015, PloS one.

Exploring the Genetic Signature of Body Size in Yucatan Miniature Pig

Namshin Kim, Heebal Kim, Tae-Hun Kim, 2014, PloS one.

An integrated approach to infer causal associations among gene expression, genotype variation, and disease.

Taesung Park, Seoae Cho, Eunjee Lee, 2009, Genomics.

Distinctive origin and evolution of endemic thistle of Korean volcanic island: Structural organization and phylogenetic relationships with complete chloroplast genome

Seoae Cho, Won-Jae Chi, S. Jhang, 2023, PloS one.

Genome-wide detection and characterization of positive selection in Korean Native Black Pig from

Heebal Kim, Seoae Cho, Jaemin Kim, 2015 .

Genome-wide detection and characterization of positive selection in Korean Native Black Pig from Jeju Island

Heebal Kim, Seoae Cho, Jaemin Kim, 2015, BMC Genetics.

Identification of Differentially Evolved Genes: An Alternative Approach to Detection of Accelerated Molecular Evolution from Genome-Wide Comparative Data

D. Burt, Heebal Kim, Kyu-Won Kim, 2013, Evolutionary bioinformatics online.

Exploring evidence of positive selection reveals genetic basis of meat quality traits in Berkshire pigs through whole genome sequencing

Heebal Kim, Seoae Cho, Jaemin Kim, 2015, BMC Genetics.

Genome-wide analysis of copy number variations reveals that aging processes influence body fat distribution in Korea Associated Resource (KARE) cohorts

Heebal Kim, Seoae Cho, K. Seo, 2012, Human Genetics.

Identification of genetic polymorphisms in FABP3 and FABP4 and putative association with back fat thickness in Korean native cattle.

H. Shin, H. Cheong, Seoae Cho, 2008, BMB reports.

Uncovering Genomic Features and Maternal Origin of Korean Native Chicken by Whole Genome Sequencing

Heebal Kim, Seoae Cho, Woori Kwak, 2014, PloS one.

VCS: Tool for Visualizing Copy Number Variation and Single Nucleotide Polymorphism

Heebal Kim, Tae-Hun Kim, Seoae Cho, 2014, Asian-Australasian journal of animal sciences.

HGTree: database of horizontally transferred genes determined by tree reconciliation

Heebal Kim, Minseok Seo, Seoae Cho, 2015, Nucleic Acids Res..

Changes in cell membrane fatty acid composition of Streptococcus thermophilus in response to gradually increasing heat temperature.

Seoae Cho, Heebal Kim, Bonggyu Min, 2020, Journal of microbiology and biotechnology.

RNA-seq analysis for detecting quantitative trait-associated genes

Seoae Cho, Minseok Seo, Heebal Kim, 2016, Scientific Reports.

Complete genome analysis of Lactobacillus fermentum SK152 from kimchi reveals genes associated with its antimicrobial activity.

Heebal Kim, Seoae Cho, D. Kang, 2017, FEMS microbiology letters.

Establishment and evaluation of prediction model for multiple disease classification based on gut microbial data

Heebal Kim, Seoae Cho, S. Kim, 2019, Scientific Reports.

Characterizing Milk Production Related Genes in Holstein Using RNA-seq

Heebal Kim, Seoae Cho, J. Jeong, 2016, Asian-Australasian journal of animal sciences.

Accurate and Strict Identification of Probiotic Species Based on Coverage of Whole-Metagenome Shotgun Sequencing Data

Hyo-Sun Kwak, Woojung Lee, Sewook Park, 2019, Front. Microbiol..

Genome-wide Association Study (GWAS) and Its Application for Improving the Genomic Estimated Breeding Values (GEBV) of the Berkshire Pork Quality Traits

Seoae Cho, Y. Ryu, H. Kim, 2015, Asian-Australasian journal of animal sciences.

Comparative Analysis of the Complete Genome of Lactobacillus plantarum GB-LP2 and Potential Candidate Genes for Host Immune System Enhancement.

Seoae Cho, Woori Kwak, D. Kang, 2016, Journal of microbiology and biotechnology.

Comparative transcriptomic analysis to identify differentially expressed genes in fat tissue of adult Berkshire and Jeju Native Pig using RNA-seq

Sang Pyo Hong, N. Sharma, Heebal Kim, 2014, Molecular Biology Reports.

Complete mitochondrial genome sequences of Korean native horse from Jeju Island: uncovering the spatio-temporal dynamics

Heebal Kim, Seoae Cho, Jaemin Kim, 2017, Molecular Biology Reports.

Effects of Onion Extracts on Growth Performance, Carcass Characteristics and Blood Profiles of White Mini Broilers

Seoae Cho, Sungtaek Oh, S. Kim, 2014, Asian-Australasian journal of animal sciences.

Developmental Dynamic Analysis of the Excreted Microbiome of Chickens Using Next-Generation Sequencing

Seoae Cho, S. Choi, Soohyun Cho, 2015, Journal of Molecular Microbiology and Biotechnology.

Comparative genomics reveals insights into avian genome evolution and adaptation

Andreas R. Pfenning, Michael N Romanov, T. Warnow, 2014, Science.

Transcriptome profiling of differentially expressed genes in floral buds and flowers of male sterile and fertile lines in watermelon

Seoae Cho, Sun-Ju Rhee, Yoon-Jeong Jang, 2015, BMC Genomics.

Complete genome sequence and potential pathogenic assessment of Flavobacterium plurextorum RSG‐18 isolated from the gut of Schlegel's black rockfish, Sebastes schlegelii

Seoae Cho, Donghyeok Seol, Ki-Eun Lee, 2024, Environmental microbiology reports.

Deciphering signature of selection affecting beef quality traits in Angus cattle

Heebal Kim, Joon Yoon, Seoae Cho, 2017, Genes & Genomics.

Organization and evolution of mitochondrial gene clusters in human.

Heebal Kim, Seoae Cho, Sunjin Moon, 2008, Genomics.