Rohan Maddamsetti

发表

A universal RNAi-based logic evaluator that operates in mammalian cells

R. Weiss, Y. Benenson, Sairam Subramanian, 2007, Nature Biotechnology.

Parallels and promising directions in the study of genetic, cultural, and moral evolution

Rohan Maddamsetti, Jacob Bower-Bir, Jacob S. Bower-Bir, 2018, 1810.00501.

Sustained fitness gains and variability in fitness trajectories in the long-term evolution experiment with Escherichia coli

Joshua R. Nahum, Michael J. Wiser, E. J. Baird, 2015, bioRxiv.

Sustained fitness gains and variability in fitness trajectories in the long-term evolution experiment with Escherichia coli

Michael J. Wiser, E. J. Baird, R. Lenski, 2015, bioRxiv.

Genome-wide discovery of epistatic loci affecting antibiotic resistance in Neisseria gonorrhoeae using evolutionary couplings

Debora S. Marks, Benjamin Schubert, Rohan Maddamsetti, 2018, Nature Microbiology.

Maintenance of Metabolic Plasticity Despite Relaxed Selection in a Long-Term Evolution Experiment with Escherichia coli

R. Lenski, Rohan Maddamsetti, Nkrumah A. Grant, 2020, bioRxiv.

Core Genes Evolve Rapidly in the Long-Term Evolution Experiment with Escherichia coli

Anna G. Green, R. Lenski, D. Marks, 2016, bioRxiv.

Universal Constraints on Protein Evolution in the Long-Term Evolution Experiment with Escherichia coli

Rohan Maddamsetti, 2020, bioRxiv.

Genome-wide discovery of epistatic loci affecting antibiotic resistance using evolutionary couplings

D. Marks, J. Nyman, B. Schubert, 2018, bioRxiv.

Haplotype-Phased Synthetic Long Reads from Short-Read Sequencing

Timothy A. Whitehead, D. Burton, C. T. Brown, 2015, bioRxiv.

Synonymous Genetic Variation in Natural Isolates of Escherichia coli Does Not Predict Where Synonymous Substitutions Occur in a Long-Term Experiment

Jeffrey E. Barrick, R. Lenski, J. Barrick, 2015, Molecular biology and evolution.

Proteome-scale discovery of protein interactions with residue-level resolution using sequence coevolution

Anna G. Green, D. Marks, O. Kohlbacher, 2019, bioRxiv.

Discovery of positive and purifying selection in metagenomic time series of hypermutator microbial populations

Rohan Maddamsetti, Nkrumah A. Grant, 2022, bioRxiv.

Phylogenomic analysis of the uracil-DNA glycosylase superfamily.

M. Lynch, Rohan Maddamsetti, J. I. Lucas-Lledó, 2011, Molecular biology and evolution.

Genomic and phenotypic evolution of Escherichia coli in a novel citrate-only resource environment

Jeffrey E. Barrick, R. Lenski, J. Barrick, 2020, bioRxiv.

Adaptation, Clonal Interference, and Frequency-Dependent Interactions in a Long-Term Evolution Experiment with Escherichia coli

Jeffrey E. Barrick, Rohan Maddamsetti, Jeffrey E Barrick, 2015, Genetics.

Large-scale discovery of protein interactions at residue resolution using co-evolution calculated from genomic sequences

Anna G. Green, D. Marks, O. Kohlbacher, 2021, Nature Communications.

Selection Maintains Protein Interactome Resilience in the Long-Term Evolution Experiment with Escherichia coli

Rohan Maddamsetti, 2021, bioRxiv.

Divergent Evolution of Mutation Rates and Biases in the Long-Term Evolution Experiment with Escherichia coli

Rohan Maddamsetti, Nkrumah A. Grant, 2020, bioRxiv.

Maintenance of Metabolic Plasticity despite Relaxed Selection in a Long-Term Evolution Experiment with Escherichia coli*

R. Lenski, Rohan Maddamsetti, Nkrumah A. Grant, 2021, The American Naturalist.

Idiosyncratic Purifying Selection on Metabolic Enzymes in the Long-Term Evolution Experiment with Escherichia coli

Rohan Maddamsetti, 2021, bioRxiv.

Horizontal gene transfer may explain variation in {\theta}s

Jeffrey E. Barrick, R. Lenski, J. Barrick, 2012, 1210.0050.

Analysis of bacterial genomes from an evolution experiment with horizontal gene transfer shows that recombination can sometimes overwhelm selection

R. Lenski, Rohan Maddamsetti, 2017, bioRxiv.

Core Genes Evolve Rapidly in the Long-Term Evolution Experiment with Escherichia coli

Anna G. Green, R. Lenski, D. Marks, 2016, bioRxiv.

Gain‐of‐function experiments with bacteriophage lambda uncover residues under diversifying selection in nature

Stephanie J. Spielman, D. Marks, Rohan Maddamsetti, 2018, Evolution; international journal of organic evolution.

Viral gain-of-function experiments uncover residues under diversifying selection in nature

Stephanie J. Spielman, D. Marks, Rohan Maddamsetti, 2018, bioRxiv.

A simple test to infer mode of selection in metagenomics time series of evolving asexual populations

Rohan Maddamsetti, Nkrumah A. Grant, 2020 .

Gene flow in microbial communities could explain unexpected patterns of synonymous variation in the Escherichia coli core genome

Rohan Maddamsetti, 2016, Mobile genetic elements.

Genome-wide discovery of epistatic loci affecting antibiotic resistance in Neisseria gonorrhoeae using evolutionary couplings

D. Marks, J. Nyman, B. Schubert, 2018, Nature Microbiology.

Intra- and interpopulation transposition of mobile genetic elements driven by antibiotic selection

L. You, Rohan Maddamsetti, Shangying Wang, 2022, Nature Ecology & Evolution.