D. Holloway

发表

Making the body plan: Precision in the genetic hierarchy of Drosophila embryo segmentation

David M. Holloway, Alexander V. Spirov, A. Spirov, 2003, Silico Biol..

Suppression of positional errors in biological development.

L. G. Harrison, D. Holloway, 1999, Mathematical biosciences.

Mid-Embryo Patterning and Precision in Drosophila Segmentation: Krüppel Dual Regulation of hunchback

A. Spirov, D. Holloway, 2015, PloS one.

Stochastic dynamics of gene expression in developing fly embryos

A. Spirov, D. Holloway, 2017, 2017 International Conference on Noise and Fluctuations (ICNF).

Transcriptional bursting in Drosophila development: Stochastic dynamics of eve stripe 2 expression

A. Spirov, D. Holloway, David M Holloway, 2017, PloS one.

Reaction-diffusion theory of localized structures with application to vertebrate organogenesis

D. Holloway, 1995 .

Experimental and Modeling Approaches for Understanding the Effect of Gene Expression Noise in Biological Development

D. Holloway, 2018, Front. Phys..

Order and localization in reaction-diffusion pattern

L. G. Harrison, D. Holloway, 1995 .

Computations of post‐inductive dynamics in axolotl heart formation

L. G. Harrison, D. Holloway, J. B. Armstrong, 1994, Developmental dynamics : an official publication of the American Association of Anatomists.

Using evolutionary computations to understand the design and evolution of gene and cell regulatory networks.

A. Spirov, D. Holloway, 2013, Methods.

Systems Evolutionary Biology of Waddington’s Canalization and Genetic Assimilation

A. Spirov, D. Holloway, M. Sabirov, 2018 .

Using evolutionary algorithms to study the evolution of gene regulatory networks controlling biological development

David M. Holloway, Alexander V. Spirov, A. Spirov, 2016 .

Design of a dynamic model of genes with multiple autonomous regulatory modules by evolutionary computations

David M. Holloway, Alexander V. Spirov, A. Spirov, 2010, ICCS.

In Silico Evolution of Gene Cooption in Pattern-Forming Gene Networks

A. Spirov, D. Holloway, M. Sabirov, 2012, TheScientificWorldJournal.

Quantification reveals early dynamics in Drosophila maternal gradients

N. Golyandina, A. Spirov, D. Holloway, 2020, bioRxiv.

Variable patterning in fruit fly embryos due to basins of attraction in underlying gene regulatory dynamics

A. Spirov, D. Holloway, 2012 .

Gene expression noise in embryonic spatial patterning: Reliable formation of the head-to-tail axis in the fruit fly

A. Spirov, D. Holloway, 2011, 2011 21st International Conference on Noise and Fluctuations.

Recruiting New Genes in Evolving Genetic Networks : Simulation by the Genetic Algorithms Technique

A. Spirov, D. Holloway, 2007 .

Analysis of pattern precision shows that Drosophila segmentation develops substantial independence from gradients of maternal gene products

David Kosman, L. G. Harrison, D. Kosman, 2006, Developmental dynamics : an official publication of the American Association of Anatomists.

Shaped 3D Singular Spectrum Analysis for Quantifying Gene Expression, with Application to the Early Zebrafish Embryo

N. Golyandina, A. Spirov, D. Holloway, 2015, BioMed research international.

Two-stage patterning dynamics in conifer cotyledon whorl morphogenesis

D. Holloway, I. Rozada, Joshua J H Bray, 2018, Annals of botany.

Polar auxin transport dynamics of primary and secondary vein patterning in dicot leaves

D. Holloway, C. Wenzel, 2021, in silico Plants.

Shaped Singular Spectrum Analysis for Quantifying Gene Expression, with Application to the Early Drosophila Embryo

N. Golyandina, A. Spirov, D. Holloway, 2015, BioMed research international.

Retroviral Genetic Algorithms - Implementation with Tags and Validation Against Benchmark Functions

David M. Holloway, Alexander V. Spirov, A. Spirov, 2018, IJCCI.

Spatial Bistability Generates hunchback Expression Sharpness in the Drosophila Embryo

David M. Holloway, Alexander V. Spirov, Francisco J. P. Lopes, 2008, PLoS Comput. Biol..

The Chemical Kinetics of Shape Determination in Plants

D. Holloway, 2012 .

Pattern selection in plants: coupling chemical dynamics to surface growth in three dimensions.

L. G. Harrison, D. Holloway, David M Holloway, 2007, Annals of botany.

Algal morphogenesis: modelling interspecific variation in Micrasterias with reaction–diffusion patterned catalysis of cell surface growth

L. G. Harrison, D. Holloway, 1999 .

In silico evolution of the hunchback gene indicates redundancy in cis-regulatory organization and spatial gene expression

David M. Holloway, Alexander V. Spirov, Elizaveta A. Zagrijchuk, 2014, J. Bioinform. Comput. Biol..

Reaction-Diffusion Patterns in Plant Tip Morphogenesis: Bifurcations on Spherical Caps

D. Holloway, W. Nagata, H. Zangeneh, 2013, Bulletin of Mathematical Biology.

Dynamic regulation of growing domains for elongating and branching morphogenesis in plants

David M. Holloway, Lionel G. Harrison, Richard J. Adams, 2012, Biosyst..

The role of chemical dynamics in plant morphogenesis(1).

D. Holloway, 2010, Biochemical Society transactions.

Reaction-Diffusion Patterns in Plant Tip Morphogenesis: Bifurcations on Spherical Caps

D. Holloway, W. Nagata, H. Zangeneh, 2013, Bulletin of Mathematical Biology.

Measuring Gene Expression Noise in Early Drosophila Embryos: The Highly Dynamic Compartmentalized Micro-environment of the Blastoderm Is One of the Main Sources of Noise

David M. Holloway, Alexander V. Spirov, Nina Golyandina, 2012, EvoBIO.

Measuring Gene Expression Noise in Early Drosophila Embryos: Nucleus-to-nucleus Variability

David M. Holloway, Alexander V. Spirov, Konstantin Usevich, 2012, ICCS.

Two-Exponential Models of Gene Expression Patterns for Noisy Experimental Data

Nina Golyandina, Theodore Alexandrov, Alexander Spirov, 2017, J. Comput. Biol..

Experimental Determination of Intrinsic Drosophila Embryo Coordinates by Evolutionary Computation

David M. Holloway, Alexander V. Spirov, Ekaterina N. Spirova, 2013, PRIB.

Modeling the Evolution of Gene Regulatory Networks for Spatial Patterning in Embryo Development

David M. Holloway, Alexander V. Spirov, A. Spirov, 2013, ICCS.

Gene Expression Noise in Spatial Patterning: hunchback Promoter Structure Affects Noise Amplitude and Distribution in Drosophila Segmentation

Luciano da Fontoura Costa, David M. Holloway, Alexander V. Spirov, 2011, PLoS Comput. Biol..

The Effects of Gene Recruitment on the Evolvability and Robustness of Pattern-Forming Gene Networks

David M. Holloway, Alexander V. Spirov, A. Spirov, 2009 .

Noise in the segmentation gene network of Drosophila with implications for mechanisms of body axis specification

David M. Holloway, Alexander V. Spirov, Lionel G. Harrison, 2003, SPIE International Symposium on Fluctuations and Noise.

Evolutionary Techniques for Image Processing a Large Dataset of Early Drosophila Gene Expression

David M. Holloway, Alexander V. Spirov, A. Spirov, 2003, EURASIP J. Adv. Signal Process..

New Approaches to Designing Genes by Evolution in the Computer

David M. Holloway, Alexander V. Spirov, A. Spirov, 2012 .

Forced evolution in silico by artificial transposons and their genetic operators: The ant navigation problem

Juan Julián Merelo Guervós, Leonid Zamdborg, David M. Holloway, 2015, Inf. Sci..

Complex morphogenesis of surfaces: theory and experiment on coupling of reaction-diffusion patterning to growth.

L G Harrison, L. G. Harrison, D. Holloway, 2002, Faraday discussions.

Evolution in silico of genes with multiple regulatory modules on the example of the Drosophila segmentation gene hunchback

David M. Holloway, Alexander V. Spirov, A. Spirov, 2012, 2012 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB).

Sequential construction of a model for modular gene expression control, applied to spatial patterning of the Drosophila gene hunchback

David M. Holloway, Alexander V. Spirov, Ekaterina M. Myasnikova, 2016, J. Bioinform. Comput. Biol..

Size regulation of the lateral organ initiation zone and its role in determining cotyledon number in conifers

D. Holloway, R. Saunders, C. Wenzel, 2023, Frontiers in Plant Science.

A quantitative study of cotyledon positioning in conifer development

D. Holloway, Michael Wu, Joohyun Kang, 2016 .

Using EA to study the evolution of GRNs controlling biological development

A. Spirov, D. Holloway, 2016 .

Evolutionary Design of Gene Networks: Forced Evolution by Genomic Parasites

David M. Holloway, Alexander V. Spirov, Elizaveta A. Zagrijchuk, 2014, Parallel Process. Lett..