Mingchen Chen

发表

Protein Structure Prediction in CASP13 using AWSEM-Suite.

Wei Lu, Xun Chen, Peter G Wolynes, 2020, Journal of chemical theory and computation.

Exploring the F-actin/CPEB3 interaction and its possible role in the molecular mechanism of long-term memory

Nicholas P. Schafer, M. Waxham, P. Wolynes, 2020, Proceedings of the National Academy of Sciences.

Surveying the Energy Landscapes of Aβ Fibril Polymorphism.

Nicholas P. Schafer, P. Wolynes, N. Schafer, 2018, The journal of physical chemistry. B.

Frustration and the Kinetic Repartitioning Mechanism of Substrate Inhibition in Enzyme Catalysis

P. Wolynes, Mingchen Chen, Wenfei Li, 2022, The journal of physical chemistry. B.

Exploring the Interplay between Disordered and Ordered Oligomer Channels on the Aggregation Energy Landscapes of α-Synuclein.

P. Wolynes, Mingchen Chen, Xun Chen, 2022, The journal of physical chemistry. B.

Computationally exploring the mechanism of bacteriophage T7 gp4 helicase translocating along ssDNA

P. Wolynes, Shikai Jin, Mingchen Chen, 2022, Proceedings of the National Academy of Sciences of the United States of America.

Assemblies of calcium/calmodulin-dependent kinase II with actin and their dynamic regulation by calmodulin in dendritic spines

Nicholas P. Schafer, M. Waxham, P. Wolynes, 2019, Proceedings of the National Academy of Sciences.

The Associative Memory, Water Mediated, Structure and Energy Model (AWSEM)-Amylometer: Predicting Amyloid Propensity and Fibril Topology Using an Optimized Folding Landscape Model.

P. Wolynes, N. Schafer, Mingchen Chen, 2018, ACS chemical neuroscience.

Exploring the interplay between fibrillization and amorphous aggregation channels on the energy landscapes of tau repeat isoforms

Nicholas P. Schafer, P. Wolynes, N. Schafer, 2020, Proceedings of the National Academy of Sciences.

Forging tools for refining predicted protein structures

Wei Lu, Xun Chen, Mingchen Chen, 2019, Proceedings of the National Academy of Sciences.

Multiple Binding Configurations of Fis Protein Pairs on DNA: Facilitated Dissociation versus Cooperative Dissociation.

P. Wolynes, Mingchen Chen, M. Tsai, 2019, Journal of the American Chemical Society.

Multiple Binding Configurations of Fis Protein Pairs on DNA: Facilitated Dissociation versus Cooperative Dissociation

P. Wolynes, Mingchen Chen, M. Tsai, 2019, bioRxiv.

AWSEM-Suite: a protein structure prediction server based on template-guided, coevolutionary-enhanced optimized folding landscapes

Wei Lu, Xun Chen, Mingchen Chen, 2020, Nucleic Acids Res..

The Aggregation Free Energy Landscapes of Polyglutamine Repeats.

Peter G Wolynes, Mingchen Chen, Weihua Zheng, 2016, Journal of the American Chemical Society.

Exploring the aggregation free energy landscape of the amyloid-β protein (1–40)

Mingchen Chen, Peter G. Wolynes, Weihua Zheng, 2016, Proceedings of the National Academy of Sciences.

The AWSEM-Amylometer: predicting amyloid propensity and fibril topology using an optimized folding landscape model

Mingchen Chen, Peter G. Wolynes, Weihua Zheng, 2017, bioRxiv.

Frustration Dynamics and Electron-Transfer Reorganization Energies in Wild-Type and Mutant Azurins

P. Wolynes, Mingchen Chen, Xun Chen, 2022, Journal of the American Chemical Society.

Aggregation landscapes of Huntingtin exon 1 protein fragments and the critical repeat length for the onset of Huntington’s disease

Peter G Wolynes, Mingchen Chen, P. Wolynes, 2017, Proceedings of the National Academy of Sciences.

OpenAWSEM with Open3SPN2: A fast, flexible, and accessible framework for large-scale coarse-grained biomolecular simulations

Xun Chen, Mingchen Chen, Peter G. Wolynes, 2020, bioRxiv.

Protein Folding and Structure Prediction from the Ground Up II: AAWSEM for α/β Proteins.

Wei Lu, Peter G Wolynes, Mingchen Chen, 2017, The journal of physical chemistry. B.

Energy landscapes of a mechanical prion and their implications for the molecular mechanism of long-term memory

Peter G Wolynes, Mingchen Chen, Weihua Zheng, 2016, Proceedings of the National Academy of Sciences.

Surveying biomolecular frustration at atomic resolution

Cecilia Clementi, Peter G Wolynes, Xun Chen, 2020, Nature Communications.

Template-Guided Protein Structure Prediction and Refinement Using Optimized Folding Landscape Force Fields.

Peter G Wolynes, Wei Lu, Mingchen Chen, 2018, Journal of chemical theory and computation.

Protein Structure Refinement Guided by Atomic Packing Frustration Analysis

Wei Lu, Mingchen Chen, Peter G. Wolynes, 2020, bioRxiv.

The marionette mechanism of domain–domain communication in the antagonist, agonist, and coactivator responses of the estrogen receptor

P. Wolynes, Shikai Jin, Mingchen Chen, 2023, Proceedings of the National Academy of Sciences of the United States of America.

Molecular-replacement phasing using predicted protein structures from AWSEM-Suite

Xun Chen, Mingchen Chen, Peter G. Wolynes, 2020, IUCrJ.

Protein Folding and Structure Prediction from the Ground Up: The Atomistic Associative Memory, Water Mediated, Structure and Energy Model.

Peter G Wolynes, Mingchen Chen, Xingcheng Lin, 2016, The journal of physical chemistry. B.