M. Suwa

发表

Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones

Kanako O. Koyanagi, Michael A. Thomas, H. Mewes, 2004, PLoS Biology.

Statistical analysis and prediction of functional residues effective for GPCR-G-protein coupling selectivity.

M. Suwa, T. Muramatsu, 2006, Protein engineering, design & selection : PEDS.

Discrimination of outer membrane proteins using machine learning algorithms

Makiko Suwa, M Michael Gromiha, M. Gromiha, 2006, Proteins.

Discrimination of Golgi Type II Membrane Proteins Based on Their Hydropathy Profiles and the Amino Acid Propensities of Their Transmembrane Regions

T. Hirokawa, K. Tomii, M. Suwa, 2011, Bioscience, biotechnology, and biochemistry.

Species-specific variation of alternative splicing and transcriptional initiation in six eukaryotes.

O. Gotoh, Masanori Arita, Hideki Nagasaki, 2005, Gene.

Structural Basis for a Broad But Selective Ligand Spectrum of a Mouse Olfactory Receptor: Mapping the Odorant-Binding Site

Makiko Suwa, Takatsugu Hirokawa, Kazushige Touhara, 2005, The Journal of Neuroscience.

Variation of amino acid properties in all-beta globular and outer membrane protein structures.

Makiko Suwa, M Michael Gromiha, M. Gromiha, 2003, International journal of biological macromolecules.

Sequence analysis Discrimination of outer membrane proteins using support vector machines

M. Gromiha, M. Suwa, P. Horton, 2005 .

Combining sensitive database searches with multiple intermediates to detect distant homologues.

C A Orengo, M B Swindells, A A Salamov, 1999, Protein engineering.

Genome analysis: Assigning protein coding regions to three‐dimensional structures

C A Orengo, M B Swindells, A A Salamov, 1999 .

Correction: Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones

Kanako O. Koyanagi, Michael A. Thomas, Gopal R. Gopinath, 2004, PLoS biology.

Influence of cation–π interactions in protein–DNA complexes

M. Michael Gromiha, Makiko Suwa, C. Santhosh, 2004 .

Polarity Difference Score : A New Measure for Recognition and Classification of Transmembrane Protein Structures

Y. Masuho, M. Suwa, S. Mitaku, 2001 .

Polarity Difference Score

Y. Masuho, M. Suwa, S. Mitaku, 2000 .

SEVENS: a database for comprehensive GPCR genes obtained from genomes

M. Suwa, M. Ikeda, M. Sugihara, 2018, Biophysics and physicobiology.

SEVENS: Comprehensive Collection of Human Seven Transmembrane Helix Receptors

H. Aburatani, Masanori Arita, K. Asai, 2002 .

Dynamics of bovine opsin bound to G-protein fragments.

M. Suwa, A. Bondar, M. Sugihara, 2014, Journal of structural biology.

Identification of Glycosyltransferases Focusing on Golgi Transmembrane Region

K. Asai, Y. Akiyama, T. Hirokawa, 2007 .

Identification of a binding element for the cytoplasmic regulator FROUNT in the membrane-proximal C-terminal region of chemokine receptors CCR2 and CCR5.

K. Matsushima, M. Suwa, I. Shimada, 2014, The Biochemical journal.

The New Paradigm of the GPCR Analysis: The Knowledge that We Obtained from Comparison of New Structures

M. Suwa, 2008 .

Computational overview of GPCR gene universe to support reverse chemical genomics study.

M. Suwa, Yukiteru Ono, 2009, Methods in molecular biology.

Highly Selective Tuning of a Silkworm Olfactory Receptor to a Key Mulberry Leaf Volatile

R. Yamaoka, M. Suwa, K. Touhara, 2009, Current Biology.

A simple statistical method for discriminating outer membrane proteins with better accuracy

M. Michael Gromiha, Makiko Suwa, M. Gromiha, 2005, Bioinform..

Discrimination of β-Barrel Membrane Proteins Using Machine Learning Techniques

M. Gromiha, M. Suwa, 2006 .

The functional diversity of GPCR genes observed from comparative genome analysis

M. Suwa, Yukiteru Ono, 2009 .

Control of Local Rho GTPase Crosstalk by Abr

Makiko Suwa, Yukiteru Ono, Ryohei Yamaoka, 2011, Current Biology.

Odorant Receptor Map in the Mouse Olfactory Bulb: In Vivo Sensitivity and Specificity of Receptor-Defined Glomeruli

Y. Yoshihara, M. Suwa, K. Touhara, 2006, Neuron.

An integrated analysis and database system for full-length cDNA.

K. Nagai, T. Ota, T. Nishikawa, 2000, Genome informatics. Workshop on Genome Informatics.

Automatic gene collection system for genome-scale overview of G-protein coupled receptors in eukaryotes.

Makiko Suwa, Yukiteru Ono, Wataru Fujibuchi, 2005, Gene.

HUNT: launch of a full-length cDNA database from the Helix Research Institute

Hiroshi Matsui, Tomoyuki Yamamoto, Yutaka Suzuki, 2001, Nucleic Acids Res..

Using the CATH domain database to assign structures and functions to the genome sequences.

J M Thornton, M B Swindells, A A Salamov, 2000, Biochemical Society transactions.

TMFunction: database for functional residues in membrane proteins

M. Michael Gromiha, Yukimitsu Yabuki, Kazuhiko Fukui, 2008, Nucleic Acids Res..

Pivotal function for cytoplasmic protein FROUNT in CCR2-mediated monocyte chemotaxis

K. Matsushima, M. Suwa, M. Murai, 2005, Nature Immunology.

Large-scale analysis of human alternative protein isoforms: pattern classification and correlation with subcellular localization signals

Kenta Nakai, Makiko Suwa, Chie Motono, 2005, Nucleic acids research.

A bioinformatics strategy to produce a cyclically developing project structure

Makiko Suwa, Yukiteru Ono, M. Suwa, 2010 .

A bioinformatics strategy to produce a project structure of spiral development

M. Suwa, Yukiteru Ono, 2009 .

Functional and Structural Overview of G-Protein-Coupled Receptors Comprehensively Obtained from Genome Sequences

Makiko Suwa, Yukiteru Ono, M. Suwa, 2011, Pharmaceuticals.

Structural analysis of residues involving cation-pi interactions in different folding types of membrane proteins.

M. Gromiha, M. Suwa, 2005, International journal of biological macromolecules.

Neural network‐based prediction of transmembrane β‐strand segments in outer membrane proteins

Shandar Ahmad, M. Michael Gromiha, Makiko Suwa, 2004, J. Comput. Chem..

A novel measure characterized by a polar energy surface approximation for recognition and classification of transmembrane protein structures

Y. Masuho, M. Suwa, S. Mitaku, 2000, Proteins.

The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts

Teruyoshi Hishiki, Katsuhiko Murakami, Yoshihiro Kawahara, 2007, Nucleic Acids Res..

Ca2+-ATPase Molecules as a Calcium-Sensitive Membrane-Endoskeleton of Sarcoplasmic Reticulum

Y. Komeiji, M. Suwa, C. Sato, 2021, International journal of molecular sciences.

A Continuum theory for the prediction of lateral and rotational positioning of α‐helices in membrane proteins: Bacteriorhodopsin

T. Hirokawa, M. Suwa, Shigeki Mitaku, 1995, Proteins.

Role of non-covalent interactions for determining the folding rate of two-state proteins.

Makiko Suwa, M Michael Gromiha, M. Gromiha, 2004, Biophysical chemistry.

GPCR and G-protein Coupling Selectivity Prediction Based on SVM with Physico-Chemical Parameters

Yukimitsu Yabuki, Makiko Suwa, Takatsugu Hirokawa, 2005 .

Neural network-based prediction of transmembrane beta-strand segments in outer membrane proteins.

Makiko Suwa, M Michael Gromiha, M. Gromiha, 2004, Journal of computational chemistry.

Structural elements of the signal propagation pathway in squid rhodopsin and bovine rhodopsin.

W. Fujibuchi, M. Suwa, M. Sugihara, 2011, The journal of physical chemistry. B.

Development of a Machine Learning Method to Predict Membrane Protein-Ligand Binding Residues Using Basic Sequence Information

M. Michael Gromiha, M. Xavier Suresh, Makiko Suwa, 2015, Adv. Bioinformatics.

Neural network based prediction of protein structure and Function: Comparison with other machine learning methods

Shandar Ahmad, M. Michael Gromiha, Makiko Suwa, 2008, 2008 IEEE International Joint Conference on Neural Networks (IEEE World Congress on Computational Intelligence).

Discovering Functional Sites of Amino Acid Sequences Using Sorted Variable Generalization

Takashi Ishikawa, Takao Terano, Makiko Suwa, 1996 .

TMB Finding Pipeline: Novel Approach for Detecting β-Barrel Membrane Proteins in Genomic Sequences.

M. Michael Gromiha, Yukimitsu Yabuki, Makiko Suwa, 2008 .

TMB Finding Pipeline: Novel Approach for Detecting β-Barrel Membrane Proteins in Genomic Sequences

M. Michael Gromiha, Yukimitsu Yabuki, Makiko Suwa, 2007, J. Chem. Inf. Model..

TMBETADISC-RBF: Discrimination of beta-barrel membrane proteins using RBF networks and PSSM profiles

Yu-Yen Ou, M. Michael Gromiha, Makiko Suwa, 2008, Comput. Biol. Chem..

Influence of amino acid properties for discriminating outer membrane proteins at better accuracy.

Makiko Suwa, M Michael Gromiha, M. Gromiha, 2006, Biochimica et biophysica acta.

GRIFFIN: a system for predicting GPCR–G-protein coupling selectivity using a support vector machine and a hidden Markov model

Yukimitsu Yabuki, Makiko Suwa, Takatsugu Hirokawa, 2005, Nucleic Acids Res..

Bioinformatics tools for predicting GPCR gene functions.

Makiko Suwa, M. Suwa, 2014, Advances in experimental medicine and biology.

TMBETA-NET: discrimination and prediction of membrane spanning β-strands in outer membrane proteins

Shandar Ahmad, M. Michael Gromiha, Makiko Suwa, 2005, Nucleic Acids Res..

Interaction stabilizing tertiary structure of bacteriorhodopsin studied by denaturation experiments

F. Kukita, H. Itoh, M. Suwa, 1995, Proteins.

Ca2+ Dependent Formation/Collapse of Cylindrical Ca2+-ATPase Crystals in Scallop Sarcoplasmic Reticulum (SR) Vesicles: A Possible Dynamic Role of SR in Regulation of Muscle Contraction

M. Suwa, J. Nakamura, G. Tajima, 2023, International journal of molecular sciences.

Elongation and Contraction of Scallop Sarcoplasmic Reticulum (SR): ATP Stabilizes Ca2+-ATPase Crystalline Array Elongation of SR Vesicles

M. Suwa, C. Sato, J. Nakamura, 2022, International journal of molecular sciences.

Theoretical Prediction of Positioning, Orientation and Tilt Angles of Helices of a Small Membrane Protein Without Structural Template

T. Hirokawa, M. Suwa, S. Mitaku, 1995 .

Discrimination of outer membrane proteins using support vector machines

Paul Horton, M. Michael Gromiha, Makiko Suwa, 2005, Bioinform..

Folding elastic transmembrane helices to fit in a low-resolution image by electron microscopy.

M. Suwa, K. Kawasaki, Y. Ueno, 2011, Journal of bioinformatics and computational biology.

TMBETA-GENOME: database for annotated β-barrel membrane proteins in genomic sequences

M. Michael Gromiha, Yukimitsu Yabuki, Makiko Suwa, 2006, Nucleic Acids Res..

Automated classification of alternative splicing and transcriptional initiation and construction of visual database of classified patterns

Masanori Arita, Makiko Suwa, Tatsuya Nishizawa, 2006, Bioinform..