Haopeng Yu

发表

An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation

Ying Wang, Haopeng Yu, Yuling Jiao, 2014 .

Deciphering the rules of mRNA structure differentiation in Saccharomyces cerevisiae in vivo and in vitro with deep neural networks

Haopeng Yu, Yuanhui Mao, Wenjing Meng, 2019, RNA biology.

Deciphering the rules which mRNA structures differs from vivo and 1 vitro in Saccharomyces cerevisiae by deep neural networks

Haopeng Yu, Yuanhui Mao, Wenjing Meng, 2018 .

Deciphering the rules of mRNA structure differentiation in vivo and in vitro with deep neural networks in Saccharomyces cerevisiae

Haopeng Yu, Yuanhui Mao, Wenjing Meng, 2018, bioRxiv.

RSVdb: a comprehensive database of transcriptome RNA structure

Haopeng Yu, Yi Zhang, Qing Sun, 2020, Briefings Bioinform..

Analysis of Anasplatyrhynchos genome resequencing data reveals genetic signatures of artificial selection

K. Schachtschneider, Haopeng Yu, Zhengkui Zhou, 2019, PloS one.

Deep Learning in RNA Structure Studies

Yiliang Ding, Haopeng Yu, Yiman Qi, 2022, Frontiers in Molecular Biosciences.

A gene expression map of shoot domains reveals regulatory mechanisms

N. Provart, E. Meyerowitz, Caihuan Tian, 2019, Nature Communications.

Identiﬁcation of the hub genes in gastric cancer through weighted gene co-expression network analysis

Chunyang Li, Haopeng Yu, Wei Zhang, 2020 .

Guide RNA engineering enables efficient CRISPR editing with a miniature Syntrophomonas palmitatica Cas12f1 nuclease.

Haopeng Yu, Q. Ji, Yujue Wang, 2022, Cell reports.

Phase separation of OCT4 controls TAD reorganization to promote cell fate transitions.

Jianlong Wang, Haopeng Yu, Yujie Sun, 2021, Cell stem cell.

piRBase: integrating piRNA annotation in all aspects

Yi Zhao, Runsheng Chen, Shunmin He, 2021, Nucleic Acids Res..

Single-cell transcriptome analysis reveals widespread monoallelic gene expression in individual rice mesophyll cells.

Xiu-Jie Wang, Wenfeng Qian, Haopeng Yu, 2017, Science bulletin.

Programmed genome editing by a miniature CRISPR-Cas12f nuclease

Haopeng Yu, Q. Ji, Changlong Liu, 2021, Nature Chemical Biology.

Comparative Population Genomics of Bread Wheat (Triticum aestivum) Reveals Its Cultivation and Breeding History in China

Xiangfeng Wang, Haofeng Chen, Caihuan Tian, 2019, bioRxiv.

Transcriptome Survey of the Contribution of Alternative Splicing to Proteome Diversity in Arabidopsis thaliana.

Caihuan Tian, Haopeng Yu, Yuling Jiao, 2016, Molecular plant.

A network‐based variable selection approach for identification of modules and biomarker genes associated with end‐stage kidney disease

Chunyang Li, Haopeng Yu, H. Hong, 2019, Nephrology.

Transcriptome Association Identifies Regulators of Wheat Spike Architecture1[OPEN]

Xiangfeng Wang, Caixia Gao, Caihuan Tian, 2017, Plant Physiology.

Wheat in vivo RNA structure landscape reveals a prevalent role of RNA structure in modulating translational subgenome expression asymmetry

Bao Liu, R. Ramírez-González, Yiliang Ding, 2021, Genome biology.

Impact of Allergic Rhinitis and Asthma on COVID-19 Infection, Hospitalization, and Mortality

Geoffrey Liu, Haopeng Yu, Yongbo Zheng, 2021, The Journal of Allergy and Clinical Immunology: In Practice.

RSVdb: A comprehensive database of in vivo mRNA structure

Yi Zhang, Haopeng Yu, Shiheng Tao, 2019, bioRxiv.

Single-Cell Transcriptome Profiling Identifies Phagocytosis-Related Dual-Feature Cells in A Model of Acute Otitis Media in Rats

Haopeng Yu, Yu-fang Rao, Yu Zhao, 2021, Frontiers in Immunology.

ANGPTL4-Mediated Promotion of Glycolysis Facilitates the Colonization of Fusobacterium nucleatum in Colorectal Cancer

R. Liu, Haopeng Yu, Xuedong Zhou, 2021, Cancer Research.

Identification of hub genes with diagnostic values in pancreatic cancer by bioinformatics analyses and supervised learning methods

Chunyang Li, Haopeng Yu, Wei Zhang, 2018, World Journal of Surgical Oncology.

Suppression of Photosynthetic Gene Expression in Roots Is Required for Sustained Root Growth under Phosphate Deficiency1[W][OPEN]

Caihuan Tian, Haopeng Yu, Yuling Jiao, 2014, Plant Physiology.

RNA G-quadruplex structure contributes to cold adaptation in plants

J. Zhang, Yiliang Ding, C. Kwok, 2022, bioRxiv.

The Molecular Mechanism of Ethylene-Mediated Root Hair Development Induced by Phosphate Starvation

Haopeng Yu, Yuling Jiao, Dong Liu, 2016, PLoS genetics.

CRISPR-CBEI: a Designing and Analyzing Tool Kit for Cytosine Base Editor-Mediated Gene Inactivation

Shiheng Tao, Haopeng Yu, Zhaowei Wu, 2020, mSystems.

Identification of the hub genes in gastric cancer through weighted gene co-expression network analysis

Chunyang Li, Haopeng Yu, Wei Zhang, 2021, PeerJ.

Identi cation and Validation of the Hub Genes in Gastric Cancer Through Weighted Gene Co- Expression Network Analysis

Chunyang Li, Haopeng Yu, Yajing Sun, 2020 .

Structure and engineering of miniature Acidibacillus sulfuroxidans Cas12f1

Haopeng Yu, Q. Ji, Xingxu Huang, 2023, bioRxiv.

A cytosolic pentatricopeptide repeat protein is essential for tapetal plastid development by regulating OsGLK1 transcript levels in rice.

H. Zhou, Yiliang Ding, Haopeng Yu, 2022, The New phytologist.

G4Atlas: a comprehensive transcriptome-wide G-quadruplex database

Yiliang Ding, Haopeng Yu, Xiaofei Yang, 2022, Nucleic Acids Res..

An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.

Jun He, Caihuan Tian, Xiaoni Zhang, 2014 .

Manipulation of TAD reorganization by chemical-dependent genome linking

Haopeng Yu, Q. Ma, Jia Wang, 2021, STAR protocols.

Transcriptome Association Identifies Regulators of Wheat Spike Architecture1[OPEN]

Xiangfeng Wang, Caixia Gao, Caihuan Tian, 2017, Plant Physiology.

Molecular Systems Biology Peer Review Process File an Organ Boundary-enriched Gene Regulatory Network Uncovers Regulatory Hierarchies Underlying Axillary Meristem Initiation Transaction Report

Jun He, Caihuan Tian, Xiaoni Zhang, 2022 .