S. Duplessis

发表

The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

M. Gribskov, E. Uberbacher, S. Wessler, 2006, Science.

Forest tree genomics: 10 achievements from the past 10 years and future prospects

A. Déjardin, S. Duplessis, J. Leplé, 2016, Annals of Forest Science.

The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis

Y. Van de Peer, A. Brun, I. V. Grigoriev, 2008, Nature.

Obligate biotrophy features unraveled by the genomic analysis of rust fungi

Christina A. Cuomo, M. Grabherr, E. Mauceli, 2011, Proceedings of the National Academy of Sciences.

Obligate Biotrophy Features Unraveled by the Genomic Analysis of the Rust Fungi, Melampsora larici-populina and Puccinia graminis f. sp. tritici

Christina A. Cuomo, M. Grabherr, E. Mauceli, 2011 .

Elevated Ozone Concentration and Nitrogen Addition Increase Poplar Rust Severity by Shifting the Phyllosphere Microbial Community

S. Duplessis, S. Tao, Yunxia Zhang, 2021, bioRxiv.

Mitogen-Activated Protein Kinase Signaling in Plant-Interacting Fungi: Distinct Messages from Conserved Messengers[W]

S. Duplessis, B. Ellis, Marie-Claude Nicole, 2012, Plant Cell.

T-DNA transfer from Agrobacterium tumefaciens to the ectomycorrhizal fungus Pisolithus microcarpus.

S. Duplessis, F. Martin, D. Tagu, 2005, Revista Argentina de microbiologia.

Structural genomic applied on the rust fungus Melampsora larici-populina reveals two candidate effector proteins adopting cystine-knot and nuclear transport factor 2-like protein folds

A. Padilla, S. Duplessis, P. Barthe, 2019, bioRxiv.

Show me the way: rust effector targets in heterologous plant systems.

S. Duplessis, Cécile Lorrain, Benjamin Petre, 2018, Current opinion in microbiology.

Infection assays in Arabidopsis reveal candidate effectors from the poplar rust fungus that promote susceptibility to bacteria and oomycete pathogens.

S. Duplessis, D. Stewart, A. Séguin, 2018, Molecular plant pathology.

Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis

Bernard Henrissat, Stefano Ghignone, Hadi Quesneville, 2010, Nature.

Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus

Christina A. Cuomo, Q. Zeng, Zehua Chen, 2015, BMC Genomics.

Oak genome reveals facets of long lifespan

Olivier Panaud, Hadi Quesneville, Franck Salin, 2018, Nature Plants.

Toward the Discovery of Itemsets with Significant Variations in Gene Expression Matrices

A. Napoli, S. Duplessis, Mehdi Kaytoue, 2011 .

The poplar Phi class glutathione transferase: expression, activity and structure of GSTF1

S. Duplessis, N. Rouhier, C. Didierjean, 2014, Front. Plant Sci..

Poplar proteomics: update and future challenges.

S. Duplessis, J. Joets, G. Wingsle, 2011 .

Genome-wide identification of NBS resistance genes in Populus trichocarpa

B. Meyers, W. Boerjan, S. Duplessis, 2008, Plant Molecular Biology.

Annotation survey and life-cycle transcriptomics of transcription factors in rust fungi (Pucciniales) identify a possible role for cold shock proteins in dormancy exit.

S. Duplessis, E. Shelest, P. Frey, 2022, Fungal genetics and biology : FG & B.

Expert annotation and life-cycle transcriptomics of transcription factors in rust fungi (Pucciniales) highlight the role of cold shock proteins in dormancy exit

S. Duplessis, E. Shelest, P. Frey, 2021 .

Intraspecific comparative genomics of isolates of the Norway spruce pathogen (Heterobasidion parviporum) and identification of its potential virulence factors

S. Duplessis, E. Morin, F. Asiegbu, 2018, BMC Genomics.

Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen.

A. Salamov, P. Rouzé, J. Grimwood, 2012, The New phytologist.

RNA silencing in the model mycorrhizal fungus Laccaria bicolor: gene knock-down of nitrate reductase results in inhibition of symbiosis with Populus.

S. Duplessis, F. Martin, M. Kemppainen, 2009, Environmental microbiology.

2000-2019: twenty years of highly influential publications in molecular plant immunity.

S. Duplessis, Benjamin Petre, Clémentine Louet, 2022, Molecular plant-microbe interactions : MPMI.

Identification of symbiosis-regulated genes in Eucalyptus globulus-Pisolithus tinctorius ectomycorrhiza by differential hybridization of arrayed cDNAs: Regulation of gene expression in ectomycorrhiza

S. Duplessis, F. Martin, C. Voiblet, 2008 .

Identification of symbiosis-regulated genes in Eucalyptus globulus-Pisolithus tinctorius ectomycorrhiza by differential hybridization of arrayed cDNAs.

S. Duplessis, F. Martin, C. Voiblet, 2001, The Plant journal : for cell and molecular biology.

The soybean rust pathogen Phakopsora pachyrhizi displays transposable element proliferation that correlates with broad host-range adaptation on legumes

B. Henrissat, Elodie Drula, S. Brommonschenkel, 2022, bioRxiv.

Genomic Patterns of Positive Selection at the Origin of Rust Fungi

Diogo N. Silva, O. Paulo, S. Duplessis, 2015, PloS one.

Gene expression analysis of Populus deltoides roots subjected to copper stress.

S. Duplessis, A. Kohler, F. Martin, 2009 .

A rust fungal effector binds plant DNA and modulates transcription

S. Duplessis, I. Desgagné-Penix, Cécile Lorrain, 2018, Scientific Reports.

Secretomic climax in plant-fungal interactions.

S. Duplessis, H. Kuhn, 2008, The New phytologist.

Living in harmony in the wood underground: ectomycorrhizal genomics.

S. Duplessis, A. Kohler, F. Martin, 2007, Current opinion in plant biology.

Transcriptome analysis of apple leaves infected by the rust fungus Gymnosporangium yamadae at two sporulation stages (spermogonia and aecia) reveals specific host responses, rust pathogenesis-related genes and a shift in the phyllosphere fungal community composition

S. Duplessis, L. Auer, E. Morin, 2019, bioRxiv.

A remarkable expansion of oligopeptide transporter genes in rust fungi (Pucciniales) suggests a specialization in nutrients acquisition for obligate biotrophy

A. Salamov, I. Grigoriev, S. Duplessis, 2022, bioRxiv.

' s personal copy Validation of Melampsora larici-populina reference genes for in planta RT-quantitative PCR expression pro fi ling during time-course infection of poplar leaves

S. Hacquard, S. Duplessis, F. Martin, 2011 .

Comparative transcriptomics of Gymnosporangium spp. teliospores reveals a conserved genetic program at this specific stage of the rust fungal life cycle

S. Duplessis, E. Morin, Yingmei Liang, 2019, BMC Genomics.

The application of genetic approaches for investigations of mycorrhizal symbioses

S. Duplessis, D. Tagu, S. Barker, 2002, Plant and Soil.

Rust fungal effectors mimic host transit peptides to translocate into chloroplasts

S. Duplessis, J. Skłenar, S. Kamoun, 2015, bioRxiv.

Editorial: Genomics Research on Non-model Plant Pathogens: Delivering Novel Insights into Rust Fungus Biology

S. Duplessis, D. Joly, G. Bakkeren, 2016, Front. Plant Sci..

Effector proteins of rust fungi

S. Duplessis, D. Joly, Benjamin Petre, 2014, Front. Plant Sci..

Isolation of differentially expressed genes during interactions between tomato cells and a protective or a non-protective strain of Fusarium oxysporum

S. Duplessis, Floriane L’Haridon, C. Alabouvette, 2011 .

A decade after the first Pucciniales genomes: A bibliometric snapshot of (post) genomics studies in three model rust fungi

S. Duplessis, Benjamin Petre, 2022, Frontiers in Microbiology.

Breeding poplars with durable resistance to Melampsora larici-populina leaf rust: a multidisciplinary approach to understand and delay pathogen adaptation

M. Villar, F. Bitton, S. Duplessis, 2012 .

454-pyrosequencing of Coffea arabica leaves infected by the rust fungus Hemileia vastatrix reveals in planta-expressed pathogen-secreted proteins and plant functions in a late compatible plant-rust interaction.

Ana Vieira, Julie Poulain, Sébastien Duplessis, 2012, Molecular plant pathology.

Expression profiling of genes involved in the biotrophic colonisation of Coffea arabica leaves by Hemileia vastatrix

O. Paulo, S. Duplessis, D. Fernandez, 2012, European Journal of Plant Pathology.

12 Rust Fungi: Achievements and Future Challenges on Genomics and Host–Parasite Interactions

S. Duplessis, D. Fernandez, P. Talhinhas, 2013 .

Living Together Underground A Molecular Glimpse of the Ectomycorrhizal Symbiosis

S. Duplessis, F. Martin, D. Tagu, 2002 .

Validation of RT-qPCR reference genes for in planta expression studies in Hemileia vastatrix, the causal agent of coffee leaf rust.

O. Paulo, S. Duplessis, D. Fernandez, 2011, Fungal biology.

Effector-Mining in the Poplar Rust Fungus Melampsora larici-populina Secretome

Sébastien Duplessis, S. Duplessis, Cécile Lorrain, 2015, Front. Plant Sci..

T‐DNA insertion, plasmid rescue and integration analysis in the model mycorrhizal fungus Laccaria bicolor

S. Duplessis, F. Martin, M. Kemppainen, 2008, Microbial biotechnology.

Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus

Q. Zeng, Zehua Chen, B. Henrissat, 2015, BMC Genomics.

Genomic Signatures of a Major Adaptive Event in the Pathogenic Fungus Melampsora larici-populina

K. Barry, I. Grigoriev, S. Duplessis, 2021, bioRxiv.

Poplar and Pathogen Interactions: Insights from Populus Genome-Wide Analyses of Resistance and Defense Gene Families and Gene Expression Profiling

S. Duplessis, I. Major, F. Martin, 2009 .

Validation of Melampsora larici-populina reference genes for in planta RT-quantitative PCR expression profiling during time-course infection of poplar leaves

S. Hacquard, S. Duplessis, F. Martin, 2011 .

Transcript patterns associated with ectomycorrhiza development in Eucalyptus globulus and Pisolithus microcarpus.

Francis Martin, Sébastien Duplessis, Denis Tagu, 2004, The New phytologist.

Photosynthetic and respiratory changes in leaves of poplar elicited by rust infection

S. Duplessis, I. Major, A. Séguin, 2010, Photosynthesis Research.

Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies

Hadi Quesneville, Franck Salin, Karine Labadie, 2016, Molecular ecology resources.

Transposable Elements in Fungi: Coevolution With the Host Genome Shapes, Genome Architecture, Plasticity and Adaptation

E. Stukenbrock, S. Duplessis, Ursula Oggenfuss, 2021 .

Genome-wide patterns of segregation and linkage disequilibrium: the construction of a linkage genetic map of the poplar rust fungus Melampsora larici-populina

S. Duplessis, P. Frey, S. De Mita, 2014, Front. Plant Sci..

Host-specialized transcriptome of plant-associated organisms.

E. Stukenbrock, S. Duplessis, Cécile Lorrain, 2020, Current opinion in plant biology.

Computational Methods for Predicting Effectors in Rust Pathogens.

Jennifer M. Taylor, S. Duplessis, P. Dodds, 2017, Methods in molecular biology.

Overview of the functional virulent genome of the coffee leaf rust pathogen Hemileia vastatrix with an emphasis on early stages of infection

Julie Poulain, Sébastien Duplessis, Corinne Da Silva, 2014, Front. Plant Sci..

Structural genomics applied to the rust fungus Melampsora larici-populina reveals two candidate effector proteins adopting cystine knot and NTF2-like protein folds

A. Padilla, S. Duplessis, P. Barthe, 2019, Scientific Reports.

Two stripe rust effectors impair wheat resistance by suppressing import of host Fe-S protein into chloroplasts.

S. Duplessis, Xiaodong Wang, Z. Kang, 2021, Plant physiology.

Heterologous Expression Screens in Nicotiana benthamiana Identify a Candidate Effector of the Wheat Yellow Rust Pathogen that Associates with Processing Bodies

S. Duplessis, J. Skłenar, S. Kamoun, 2016, PloS one.

Candidate Effector Proteins of the Rust Pathogen Melampsora larici-populina Target Diverse Plant Cell Compartments.

S. Duplessis, J. Skłenar, S. Kamoun, 2015, Molecular plant-microbe interactions : MPMI.

The Poplar-Poplar Rust Interaction: Insights from Genomics and Transcriptomics

S. Hacquard, S. Duplessis, N. Rouhier, 2011, Journal of pathogens.

Analysis of expressed sequence tags from the ectomycorrhizal basidiomycetes Laccaria bicolor and Pisolithus microcarpus.

M. Chalot, S. Duplessis, A. Kohler, 2003, The New phytologist.

Genome-wide analysis of eukaryote thaumatin-like proteins (TLPs) with an emphasis on poplar

S. Duplessis, I. Major, N. Rouhier, 2011, BMC Plant Biology.

Phylogenetics and Phylogenomics of Rust Fungi.

S. Duplessis, A. McTaggart, M. C. Aime, 2017, Advances in genetics.

Transcript Profiling of Poplar Leaves upon Infection with Compatible and Incompatible Strains of the Foliar Rust Melampsora larici-populina1[W]

P. Wincker, A. Couloux, S. Duplessis, 2007, Plant Physiology.

Poplar Peroxiredoxin Q. A Thioredoxin-Linked Chloroplast Antioxidant Functional in Pathogen Defense1

S. Duplessis, J. Jacquot, E. Gelhaye, 2004, Plant Physiology.

Gene expression patterns of trembling aspen trees following long-term exposure to interacting elevated CO2 and tropospheric O3.

S. Duplessis, F. Martin, D. F. Karnosky, 2005, The New phytologist.

Developmental cross talking in the ectomycorrhizal symbiosis: signals and communication genes.

S. Duplessis, F. Martin, H. Lagrange, 2001, The New phytologist.

Cloning and expression analysis of a new hydrophobin cDNA from the ectomycorrhizal basidiomycete Pisolithus

S. Duplessis, F. Martin, D. Tagu, 2001, Current Genetics.

Melampsora larici-populina transcript profiling during germination and timecourse infection of poplar leaves reveals dynamic expression patterns associated with virulence and biotrophy.

S. Hacquard, S. Duplessis, A. Kohler, 2011, Molecular plant-microbe interactions : MPMI.

Transcriptome analysis of poplar rust telia reveals overwintering adaptation and tightly coordinated karyogamy and meiosis processes

S. Hacquard, S. Duplessis, A. Kohler, 2013, Front. Plant Sci..

Mining gene expression data with pattern structures in formal concept analysis

Amedeo Napoli, Mehdi Kaytoue-Uberall, Sergei O. Kuznetsov, 2011, Inf. Sci..

Advances in understanding obligate biotrophy in rust fungi.

S. Duplessis, Cécile Lorrain, Arnaud Hecker, 2019, The New phytologist.

A comprehensive analysis of genes encoding small secreted proteins identifies candidate effectors in Melampsora larici-populina (poplar leaf rust).

P. Rouzé, Y. van de Peer, S. Hacquard, 2012, Molecular plant-microbe interactions : MPMI.

In planta expression screens of candidate effector proteins from the wheat yellow rust fungus reveal processing bodies as a pathogen-targeted plant cell compartment

S. Duplessis, S. Kamoun, J. Win, 2015, bioRxiv.

Major proliferation of transposable elements shaped the genome of the soybean rust pathogen Phakopsora pachyrhizi

B. Henrissat, Elodie Drula, S. Brommonschenkel, 2023, Nature Communications.

A rust fungal effector binds plant DNA and modulates transcription

S. Duplessis, I. Desgagné-Penix, Cécile Lorrain, 2018, Scientific Reports.

Transcript Profiling Reveals Novel Marker Genes Involved in Fruiting Body Formation in Tuber borchii

Francis Martin, Barbara Montanini, Paola Bonfante, 2005, Eukaryotic Cell.

A point mutation and large deletion at the candidate avirulence locus AvrMlp7 in the poplar rust fungus correlate with poplar RMlp7 resistance breakdown

S. Duplessis, P. Frey, A. Persoons, 2021, Molecular ecology.

Gene expression patterns of trembling aspen trees following long-term exposure to interacting elevated CO2 and tropospheric O3.

S. Duplessis, F. Martin, D. F. Karnosky, 2005, The New phytologist.

Advancing Knowledge on Biology of Rust Fungi Through Genomics

R. Hamelin, S. Duplessis, G. Bakkeren, 2014 .

Patterns of genomic variation in the poplar rust fungus Melampsora larici-populina identify pathogenesis-related factors

S. Duplessis, E. Morin, C. Delaruelle, 2014, Front. Plant Sci..

Host Adaptation and Virulence in Heteroecious Rust Fungi.

S. Duplessis, M. C. Aime, P. Dodds, 2021, Annual review of phytopathology.

The rust fungus Melampsora larici-populina expresses a conserved genetic program and distinct sets of secreted protein genes during infection of its two host plants, larch and poplar

S. Hacquard, S. Duplessis, C. Delaruelle, 2017, bioRxiv.

Isolation and Characterization of Differentially Expressed Genes in the Mycelium and Fruit Body of Tuber borchii

Francis Martin, Paola Bonfante, S. Duplessis, 2002, Applied and Environmental Microbiology.

A comprehensive collection of transcriptome data to support life cycle analysis of the poplar rust fungus Melampsora larici-populina

S. Duplessis, A. Kohler, E. Morin, 2021, bioRxiv.

RNA-Seq of Early-Infected Poplar Leaves by the Rust Pathogen Melampsora larici-populina Uncovers PtSultr3;5, a Fungal-Induced Host Sulfate Transporter

J. Poulain, S. Hacquard, S. Duplessis, 2012, PloS one.

Laser capture microdissection of uredinia formed by Melampsora larici-populina revealed a transcriptional switch between biotrophy and sporulation.

S. Hacquard, S. Duplessis, A. Kohler, 2010, Molecular plant-microbe interactions : MPMI.

A Short Review of Anti-Rust Fungi Peptides: Diversity and Bioassays

S. Duplessis, Guillaume Dubrulle, Benjamin Petre, 2022, Frontiers in Agronomy.

The Poplar Rust-Induced Secreted Protein (RISP) Inhibits the Growth of the Leaf Rust Pathogen Melampsora larici-populina and Triggers Cell Culture Alkalinisation

S. Duplessis, N. Rouhier, A. Séguin, 2016, Front. Plant Sci..

The rust fungus Melampsora larici-populina expresses a conserved genetic program and distinct sets of secreted protein genes during infection of its two host plants, larch and poplar

S. Hacquard, S. Duplessis, C. Delaruelle, 2017, bioRxiv.

Genome analysis of poplar LRR-RLP gene clusters reveals RISP, a defense-related gene coding a candidate endogenous peptide elicitor

S. Hacquard, S. Duplessis, N. Rouhier, 2014, Front. Plant Sci..

On the current status of Phakopsora pachyrhizi genome sequencing

V. Beneš, R. Reinhardt, B. Usadel, 2014, Front. Plant Sci..

Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen.

A. Salamov, P. Rouzé, J. Grimwood, 2012, The New phytologist.

Phylogenetics and Phylogenomics of Rust Fungi.

S. Duplessis, A. McTaggart, M. C. Aime, 2017, Advances in genetics.

Barbara Tuber borchii in Genes Involved in Fruiting Body Formation Transcript Profiling Reveals Novel Marker

S. Duplessis, B. Montanini, P. Bonfante, 2005 .

Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies

P. Wincker, A. Couloux, V. Barbe, 2016, Molecular ecology resources.