Chaitanya Rastogi

发表

Evolving insights on how cytosine methylation affects protein–DNA binding

Tianyin Zhou, A. C. Dantas Machado, R. Rohs, 2014, Briefings in functional genomics.

22 Evolving insights on how cytosine methylation affects protein-DNA binding

Tianyin Zhou, R. Rohs, H. Bussemaker, 2015, Journal of biomolecular structure & dynamics.

Accurate and sensitive quantification of protein-DNA binding affinity

R. Mann, H. Bussemaker, William Freed-Pastor, 2018, Proceedings of the National Academy of Sciences.

Annual Review of Cell and Developmental Biology Low-Affinity Binding Sites and the Transcription Factor Specificity Paradox in Eukaryotes

Chaitanya Rastogi, R. Mann, H. Bussemaker, 2019 .

SelexGLM differentiates androgen and glucocorticoid receptor DNA-binding preference over an extended binding site

H. Bussemaker, J. Houtman, Chaitanya Rastogi, 2017, bioRxiv.

Context-Dependent Gene Regulation by Homeodomain Transcription Factor Complexes Revealed by Shape-Readout Deficient Proteins.

R. Mann, H. Bussemaker, Chaitanya Rastogi, 2020, Molecular cell.

Context-dependent gene regulation by transcription factor complexes

R. Mann, H. Bussemaker, Chaitanya Rastogi, 2019, bioRxiv.

SELEX-seq: a method for characterizing the complete repertoire of binding site preferences for transcription factor complexes.

R. Mann, Matthew Slattery, H. Bussemaker, 2014, Methods in molecular biology.

A unified approach for quantifying and interpreting DNA shape readout by transcription factors

Chaitanya Rastogi, H. Bussemaker, Chaitanya Rastogi, 2018, Molecular systems biology.

Prediction of protein–ligand binding affinity from sequencing data with interpretable machine learning

R. Mann, H. Bussemaker, Neel H. Shah, 2022, Nature Biotechnology.

Probing molecular specificity with deep sequencing and biophysically interpretable machine learning

R. Mann, H. Bussemaker, Neel H. Shah, 2021, bioRxiv.

Transcription factor paralogs orchestrate alternative gene regulatory networks by context-dependent cooperation with multiple cofactors

R. Mann, H. Bussemaker, Chaitanya Rastogi, 2022, Nature Communications.

In vivo Hox binding specificity revealed by systematic changes to a single cis regulatory module

R. Mann, H. Bussemaker, Chaitanya Rastogi, 2019, Nature Communications.

Dewetting of the thin liquid bilayers on topographically patterned substrates: formation of microchannel and microdot arrays.

Ashutosh Sharma, Chaitanya Rastogi, D. Bandyopadhyay, 2008, Langmuir.

Optimisation of TP53 reporters by systematic dissection of synthetic TP53 response elements

H. Bussemaker, B. van Steensel, Chaitanya Rastogi, 2023, bioRxiv.

Low-Affinity Binding Sites and the Transcription Factor Specificity Paradox in Eukaryotes.

H. Bussemaker, Chaitanya Rastogi, J. Kribelbauer, 2019, Annual Review of Cell and Developmental Biology.