Jiamu Du

发表

Dual Binding of Chromomethylase Domains to H3K9me2-Containing Nucleosomes Directs DNA Methylation in Plants

D. Patel, Jonathan Hetzel, S. Jacobsen, 2012, Cell.

Binding of guide piRNA triggers methylation of the unstructured N-terminal region of Aub leading to assembly of the piRNA amplification complex

R. Sachidanandam, D. Patel, A. Aravin, 2020, Nature Communications.

Arabidopsis AGDP1 links H3K9me2 to DNA methylation in heterochromatin

W. Tao, Jian‐Kang Zhu, Xin‐Jian He, 2018, Nature Communications.

DNA methylation pathways and their crosstalk with histone methylation

D. Patel, S. Jacobsen, Jiamu Du, 2015, Nature Reviews Molecular Cell Biology.

A novel protein complex that regulates active DNA demethylation in Arabidopsis

Huan-Wei Huang, Jian‐Kang Zhu, Jiamu Du, 2020, bioRxiv.

A H3K9me2-Binding Protein AGDP3 Limits DNA Methylation and Transcriptional Gene Silencing in Arabidopsis

R. Liu, Jian‐Kang Zhu, Jiamu Du, 2021, bioRxiv.

Dual recognition of H3K4me3 and H3K27me3 by a plant histone reader SHL

Wei Chen, J. Denu, Xuehua Zhong, 2018, Nature Communications.

EBS is a bivalent histone reader that regulates floral phase transition in Arabidopsis

Lloyd M. Smith, M. Scalf, J. Denu, 2018, Nature Genetics.

Embryonic resetting of the parental vernalized state by two B3 domain transcription factors in Arabidopsis

Jiamu Du, Hongmiao Hu, Zeng Tao, 2019, Nature Plants.

Residues Asp164 and Glu165 at the substrate entryway function potently in substrate orientation of alanine racemase from E. coli: Enzymatic characterization with crystal structure analysis

Hualiang Jiang, Xu Shen, T. Hu, 2008, Protein science : a publication of the Protein Society.

Dysfunction of histone demethylase IBM1 in Arabidopsis causes autoimmunity and reshapes the root microbiome

Jiamu Du, Xiaoxuan Wu, Ziwei Zuo, 2022, The ISME Journal.

Acetylproteomics analyses reveal critical features of lysine-ε-acetylation in Arabidopsis and a role of 14-3-3 protein acetylation in alkaline response

Jian-Kang Zhu, Jiamu Du, Heng Zhang, 2022, Stress Biology.

A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis

Jiamu Du, Wannian Yang, Wenya Yuan, 2016, Nature Genetics.

Resistance protein Pit interacts with the GEF OsSPK1 to activate OsRac1 and trigger rice immunity

K. Shimamoto, Jiamu Du, Y. Kawano, 2018, Proceedings of the National Academy of Sciences.

Making a 6mA demethylase

Jiamu Du, Sisi Li, 2022, Nature Chemical Biology.

Cofactor-assisted dicing: insights from structural snapshots

D. Patel, Jiamu Du, 2022, Cell Research.

Mechanism of siRNA production by a plant Dicer-RNA complex in dicing-competent conformation

S. Jacobsen, J. Zhai, S. Feng, 2021, Science.

Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis

D. Patel, S. Jacobsen, Xuehua Zhong, 2013, Nature Structural & Molecular Biology.

Structure and mechanism of histone methylation dynamics in Arabidopsis.

Jiamu Du, Hongmiao Hu, 2022, Current opinion in plant biology.

Coupling of H3K27me3 recognition with transcriptional repression through the BAH-PHD-CPL2 complex in Arabidopsis

Jian‐Kang Zhu, Jiamu Du, Guiping Zhang, 2020, Nature Communications.

Mouse MORC3 is a GHKL ATPase that localizes to H3K4me3 marked chromatin

William A. Pastor, A. Burlingame, D. Patel, 2016, Proceedings of the National Academy of Sciences.

Corrigendum: SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation

Christopher J. Hale, M. Pellegrini, D. Patel, 2017, Nature.

SRA/SET domain-containing proteins link RNA polymerase V occupancy to DNA methylation

Christopher J. Hale, M. Pellegrini, D. Patel, 2014, Nature.

Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1

Brian D. Strahl, Krzysztof Krajewski, Julie A. Law, 2013, Nature.

Molecular Mechanism of Action of Plant DRM De Novo DNA Methyltransferases

Christopher J. Hale, D. Patel, J. Chory, 2014, Cell.

Transgenerationally inherited piRNAs trigger piRNA biogenesis by changing the chromatin of piRNA clusters and inducing precursor processing

R. Sachidanandam, D. Patel, A. Aravin, 2014, Genes & development.

Structure of plant RNA-DEPENDENT RNA POLYMERASE 2, an enzyme involved in small interfering RNA production.

Jiamu Du, A. Ariza, Sisi Li, 2022, The Plant Cell.

Expression, purification, crystallization, and preliminary X-ray diffraction analysis of the human TLE1 Q domain.

Jiamu Du, H. Tang, S. Wang, 2011, Acta biochimica et biophysica Sinica.

Structural Basis for the Blockage of IL-2 Signaling by Therapeutic Antibody Basiliximab

Jianping Ding, Jiamu Du, Ya-jun Guo, 2009, The Journal of Immunology.

Structural basis for recognition of H3T3ph and Smac/DIABLO N-terminal peptides by human Survivin.

Jiamu Du, D. Patel, Jiamu Du, 2012, Structure.

Emodin targets the β-hydroxyacyl-acyl carrier protein dehydratase from Helicobacter pylori: enzymatic inhibition assay with crystal structural and thermodynamic characterization

Hualiang Jiang, Xu Shen, Jianping Ding, 2009, BMC Microbiology.

Structure and function of the bacterial decapping enzyme NudC

D. Patel, Jiamu Du, Katharina Höfer, 2016, Nature chemical biology.

Multiplex CRISPR-Cas9 editing of DNA methyltransferases in rice uncovers a class of non-CG methylation specific for GC-rich regions.

Li Feng, Jinbu Jia, J. Zhai, 2021, The Plant cell.

The roles of non-CG methylation in Arabidopsis

D. Patel, S. Jacobsen, Xuehua Zhong, 2013, Nature Structural &Molecular Biology.

Structural biology-based insights into combinatorial readout and crosstalk among epigenetic marks.

D. Patel, Jiamu Du, 2014, Biochimica et biophysica acta.

Structural basis of immunosuppression by the therapeutic antibody daclizumab

Jianping Ding, Jiamu Du, Ya-jun Guo, 2010, Cell Research.

Crystal structure of human copper homeostasis protein CutC reveals a potential copper-binding site.

Jianping Ding, Jiamu Du, Peng Zhang, 2010, Journal of structural biology.

Crystal structure of chimeric antibody C2H7 Fab in complex with a CD20 peptide.

Jianping Ding, Jiamu Du, Ya-jun Guo, 2008, Molecular immunology.

Molecular basis of the plant ROS1-mediated active DNA demethylation

Jiamu Du, Maojun Yang, Sisi Li, 2023, Nature Plants.

A histone H3K4me1-specific binding protein is required for siRNA accumulation and DNA methylation at a subset of loci targeted by RNA-directed DNA methylation

Jian‐Kang Zhu, Jiamu Du, Zhaobo Lang, 2020, Nature Communications.

Recognition of H3K9me1 by Maize RNA-directed DNA methylation factor SHH2.

R. Liu, Jiamu Du, Heng Zhang, 2021, Journal of integrative plant biology.

Structure and Mechanism of Plant DNA Methyltransferases.

Jiamu Du, 2016, Advances in experimental medicine and biology.

Mechanistic insights into plant SUVH family H3K9 methyltransferases and their binding to context-biased non-CG DNA methylation

Wei Chen, S. Jacobsen, Jiamu Du, 2018, Proceedings of the National Academy of Sciences.

Structural insights into the multivalent binding of the Arabidopsis FLOWERING LOCUS T promoter by the CO-NF-Y master transcription factor complex.

Jiamu Du, Hongmiao Hu, Chanhong Kim, 2021, The Plant cell.

Progressive chromatin silencing of ABA biosynthesis gene permits seed germination in Arabidopsis

Yufeng Wu, Jiamu Du, Xi Chen, 2021, bioRxiv.

Structure of human MRG15 chromo domain and its binding to Lys36-methylated histone H3

Jianping Ding, Bingfa Sun, Jiamu Du, 2006, Nucleic acids research.

A DNA methylation reader complex that enhances gene transcription

S. Jacobsen, Wanlu Liu, Jiamu Du, 2018, Science.

The MRG domain of human MRG15 uses a shallow hydrophobic pocket to interact with the N‐terminal region of PAM14

Jianping Ding, Jiamu Du, P. Zhang, 2006, Protein science : a publication of the Protein Society.

Structure of human MRG 15 chromo domain and its binding to Lys 36-methylated histone H 3

Jianping Ding, Bingfa Sun, Jiamu Du, 2006 .

Functional and structural characterization of DNMT2 from Spodoptera frugiperda.

Jianping Ding, Jiamu Du, Hui Yang, 2013, Journal of molecular cell biology.

Structure and mechanism of plant histone mark readers

Wei Chen, Jiamu Du, Rui Liu, 2018, Science China Life Sciences.

Structural Basis for the Unique Multivalent Readout of Unmodified H3 Tail by Arabidopsis ORC1b BAH-PHD Cassette.

D. Patel, S. Jacobsen, Jiamu Du, 2016, Structure.

Structural Basis for Recognition of CD20 by Therapeutic Antibody Rituximab*

Jianping Ding, Jiamu Du, Ya-jun Guo, 2007, Journal of Biological Chemistry.

Structural modeling and biochemical studies reveal insights into the molecular basis of the recognition of β‐2‐microglobulin by antibody BBM.1

Jianping Ding, Jiamu Du, Hui Yang, 2009, Journal of molecular recognition : JMR.

Crystal Structure of HAb18G/CD147

Ning Wen, Jian Zhang, Xu Shen, 2008, Journal of Biological Chemistry.

Structure of the Fab fragment of therapeutic antibody Ofatumumab provides insights into the recognition mechanism with CD20.

Jianping Ding, Jiamu Du, Ya-jun Guo, 2009, Molecular immunology.

Enzymatic characterization and crystal structure analysis of the D‐alanine‐D‐alanine ligase from Helicobacter pylori

Hualiang Jiang, Xu Shen, Dalei Wu, 2008, Proteins.

Dual recognition of H3K4me3 and H3K27me3 by a plant histone reader SHL

Wei Chen, J. Denu, Xuehua Zhong, 2018, Nature Communications.

The Arabidopsis H3K27me3 demethylase JUMONJI 13 is a temperature and photoperiod dependent flowering repressor

Jiamu Du, Hongmiao Hu, Sisi Li, 2019, Nature Communications.

Structure of the Arabidopsis JMJ14-H3K4me3 Complex Provides Insight into the Substrate Specificity of KDM5 Subfamily Histone Demethylases[OPEN]

W. Tao, Jiamu Du, Hongmiao Hu, 2017, Plant Cell.

Mechanism of DNA methylation-directed histone methylation by KRYPTONITE.

Christopher J. Hale, D. Patel, S. Jacobsen, 2014, Molecular cell.

Progressive chromatin silencing of ABA biosynthesis genes permits seed germination in Arabidopsis.

Yufeng Wu, Jiamu Du, L. Qu, 2022, The Plant cell.

Embryonic resetting of the parental vernalized state by two B3 domain transcription factors in Arabidopsis

Jiamu Du, Hongmiao Hu, Zeng Tao, 2019, Nature Plants.

TEM1 combinatorially binds to FLOWERING LOCUS T and recruits a Polycomb factor to repress the floral transition in Arabidopsis

Jiamu Du, Hongmiao Hu, Sisi Li, 2021, Proceedings of the National Academy of Sciences.

Dual Recognition of H3K4me3 and DNA by the ISWI Component ARID5 Regulates the Floral Transition in Arabidopsis

She Chen, Lin Li, Xin‐Jian He, 2020, Plant Cell.

Molecular Basis of Recognition of Human Osteopontin by 23C3, a Potential Therapeutic Antibody for Treatment of Rheumatoid Arthritis

Jianping Ding, Jiamu Du, Ya-jun Guo, 2008, Journal of molecular biology.

Structure and mechanism of the plant RNA polymerase V

S. Jacobsen, Jiamu Du, Hongmiao Hu, 2023, Science.

Molecular basis of CONSTANS oligomerization in FLOWERING LOCUS T activation.

Hang He, Jiamu Du, Yuehui He, 2022, Journal of integrative plant biology.

The Arabidopsis H3K27me3 demethylase JUMONJI 13 is a temperature and photoperiod dependent flowering repressor

Jiamu Du, Hongmiao Hu, Sisi Li, 2019, Nature Communications.

Molecular basis of locus-specific H3K9 methylation catalyzed by SUVH6 in plants

Jiamu Du, Cheng-Guo Duan, Li Peng, 2022, Proceedings of the National Academy of Sciences of the United States of America.

A SYBR Gold-based Label-free in vitro Dicing Assay.

J. Zhai, S. Feng, Jiamu Du, 2022, Bio-protocol.

A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis

Jiamu Du, Wannian Yang, Wenya Yuan, 2016, Nature Genetics.

Mechanistic insights into plant SUVH family H3K9 methyltransferases and their binding to context-biased non-CG DNA methylation

S. Jacobsen, Jiamu Du, C. Harris, 2018, Proceedings of the National Academy of Sciences.

Arabidopsis AGDP1 links H3K9me2 to DNA methylation in heterochromatin

W. Tao, Jian‐Kang Zhu, Xin‐Jian He, 2018, Nature Communications.

Molecular Mechanism of Action of Plant DRM De Novo DNA Methyltransferases

Christopher J. Hale, D. Patel, J. Chory, 2014, Cell.

Structure and mechanism of plant histone mark readers

Wei Chen, Jiamu Du, Rui Liu, 2017, Science China Life Sciences.

Molecular basis of chromatin remodelling by DDM1 involved in plant DNA methylation.

Jiamu Du, Hongmiao Hu, Changshi Wang, 2024, Nature plants.

Crystal Structure of HAb18G/CD147

Jian Zhang, Hualiang Jiang, Xu Shen, 2008, Journal of Biological Chemistry.

Molecular mechanisms of the RNA polymerases in plant RNA-directed DNA methylation.

Jiamu Du, Hongmiao Hu, Xuan Du, 2023, Trends in biochemical sciences.