Hui Liu

发表

Transcriptional Regulation Functions of Nucleosome Positioning: a Survey*: Transcriptional Regulation Functions of Nucleosome Positioning: a Survey*

J. Guan, Shuigeng Zhou, Hui Liu, 2012 .

PredPRBA: Prediction of Protein-RNA Binding Affinity Using Gradient Boosted Regression Trees

Lei Deng, Hui Liu, L. Deng, 2019, Front. Genet..

miRFANs: an integrated database for Arabidopsis thaliana microRNA function annotations

J. Guan, Shuigeng Zhou, Hui Liu, 2012, BMC Plant Biology.

RMDB: An Integrated Database of Single-cytosine-resolution DNA Methylation in Oryza Sativa

J. Guan, Shuigeng Zhou, Hui Liu, 2019, Current Bioinformatics.

D2VCB: A Hybrid Deep Neural Network for the Prediction of in-vivo Protein-DNA Binding from Combined DNA Sequence

Hui Liu, Lei Deng, Hui Wu, 2019, 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Identifying Mammalian MicroRNA Targets Based on Supervised Distance Metric Learning

Hui Liu, Shuigeng Zhou, Jihong Guan, 2013, IEEE Journal of Biomedical and Health Informatics.

Inferring new indications for approved drugs via random walk on drug-disease heterogenous networks

Hui Liu, Jihong Guan, Yinglong Song, 2016, BMC Bioinformatics.

Detecting microarray data supported microRNA-mRNA interactions

Hui Liu, Shuigeng Zhou, Jihong Guan, 2010, Int. J. Data Min. Bioinform..

SynLethDB: synthetic lethality database toward discovery of selective and sensitive anticancer drug targets

Hui Liu, Jing Guo, Jie Zheng, 2015, Nucleic Acids Res..

DeepD2V: A Novel Deep Learning-Based Framework for Predicting Transcription Factor Binding Sites from Combined DNA Sequence

L. Deng, Hui Liu, Hui Wu, 2021, International journal of molecular sciences.

Graph2MDA: a multi-modal variational graph embedding model for predicting microbe-drug associations pdf

Lei Deng, Yibiao Huang, Xuejun Liu, 2021, Bioinform..

Screening lifespan-extending drugs in Caenorhabditis elegans via label propagation on drug-protein networks

Hui Liu, Jihong Guan, Ting Xue, 2016, BMC Systems Biology.

Histone modifications involved in cassette exon inclusions: a quantitative and interpretable analysis

Shuigeng Zhou, Jihong Guan, Hui Liu, 2014, BMC Genomics.

DeepDDS: deep graph neural network with attention mechanism to predict synergistic drug combinations

Lei Deng, Xuejun Liu, Hui Liu, 2021, bioRxiv.

Generalized logical model based on network topology to capture the dynamical trends of cellular signaling pathways

Fan Zhang, Hui Liu, Teresa M. Przytycka, 2016, BMC Systems Biology.

Selecting high-quality negative samples for effectively predicting protein-RNA interactions

Yang Wang, Hui Liu, Kai Huang, 2017, BMC Systems Biology.

DrugCombDB: a comprehensive database of drug combinations toward the discovery of combinatorial therapy

Lei Deng, Bo Zou, Hui Liu, 2019, Nucleic Acids Res..

Knowledge-guided fuzzy logic modeling to infer cellular signaling networks from proteomic data

Jie Zheng, Fan Zhang, Shuigeng Zhou, 2016, Scientific Reports.

Improving compound–protein interaction prediction by building up highly credible negative samples

Hui Liu, Shuigeng Zhou, Jihong Guan, 2015, Bioinform..

A comparative evaluation on prediction methods of nucleosome positioning

Wei Xiong, Hui Liu, Shuigeng Zhou, 2014, Briefings Bioinform..

Accurate prediction of protein-lncRNA interactions by diffusion and HeteSim features across heterogeneous network

Yun Xiao, L. Deng, Hui Liu, 2018, BMC Bioinformatics.

Predicting circRNA-disease associations using meta path-based representation learning on heterogenous network

Lei Deng, Hui Liu, Jing Yang, 2020, 2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

MADOKA: an ultra-fast approach for large-scale protein structure similarity searching

Hui Liu, Lei Deng, Judong Luo, 2019, BMC Bioinformatics.

A new hybrid method for learning bayesian networks: Separation and reunion

Hui Liu, Wai Lam, Shuigeng Zhou, 2017, Knowl. Based Syst..

Improving compound-protein interaction prediction by building up highly credible negative samples.

J. Guan, Shuigeng Zhou, Hui Liu, 2015, Bioinformatics.

Effectively Identifying Compound-Protein Interactions by Learning from Positive and Unlabeled Examples

Hui Liu, Yang Wang, Shuigeng Zhou, 2018, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Effectively predicting protein functions by collective classification — An extended abstract

Wei Xiong, Hui Liu, Shuigeng Zhou, 2012, 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops.

Protein function prediction by collective classification with explicit and implicit edges in protein-protein interaction networks

Wei Xiong, Hui Liu, Shuigeng Zhou, 2013, BMC Bioinformatics.

Inferring Minimal Feasible Metabolic Networks of Escherichia coli

Y. Chen, Hui Liu, Shuigeng Zhou, 2010, Applied biochemistry and biotechnology.

The centrality of cancer proteins in human protein-protein interaction network: a revisit

Wei Xiong, Hui Liu, Shuigeng Zhou, 2014, Int. J. Comput. Biol. Drug Des..

PredCSO: an ensemble method for the prediction of S-sulfenylation sites in proteins.

Lei Deng, Hui Liu, L. Deng, 2018, Molecular omics.

SynLethDB: synthetic lethality database toward discovery of selective and sensitive anticancer drug targets

Hui Liu, Jie Zheng, Jing Guo, 2015, Nucleic Acids Res..

Accurate prediction of protein-lncRNA interactions by diffusion and HeteSim features across heterogeneous network

Hui Liu, Zixiang Wang, Lei Deng, 2018, BMC Bioinformatics.

A deep neural network approach using distributed representations of RNA sequence and structure for identifying binding site of RNA-binding proteins

Hui Liu, Lei Deng, Youzhi Liu, 2019, 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).