Daniel Koenig

发表

Spontaneous epigenetic variation in the Arabidopsis thaliana methylome

Karsten M. Borgwardt, K. Borgwardt, O. Stegle, 2011, Nature.

WOX 4 Promotes Procambial Development 1 [ W ] [ OA ]

Daniel Koenig, Jiabing Ji, Josh Strable, 2010 .

Whole-genome sequencing of multiple Arabidopsis thaliana populations

Karsten M. Borgwardt, K. Borgwardt, C. Lippert, 2011, Nature Genetics.

Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato

Anthony M. Bolger, Michael F. Covington, Upendra Kumar Devisetty, 2013, Proceedings of the National Academy of Sciences.

Accurate indel prediction using paired-end short reads

K. Borgwardt, D. Weigel, D. Grimm, 2013, BMC Genomics.

Improving the Annotation of Arabidopsis lyrata Using RNA-Seq Data

Detlef Weigel, Korbinian Schneeberger, Ahmed Abdelsamad, 2015, PloS one.

Beyond the thale: comparative genomics and genetics of Arabidopsis relatives

D. Weigel, Daniel Koenig, 2015, Nature Reviews Genetics.

The Capsella rubella genome and the genomic consequences of rapid mating system evolution

Mathieu Blanchette, Wei Wang, Hadi Quesneville, 2013, Nature Genetics.

Genetic architecture of nonadditive inheritance in Arabidopsis thaliana hybrids

Karsten M. Borgwardt, Detlef Weigel, Barbara Rakitsch, 2016, Proceedings of the National Academy of Sciences.

Developmental genetics and new sequencing technologies: the rise of nonmodel organisms.

D. Weigel, Daniel Koenig, B. Rowan, 2011, Developmental cell.

Auxin patterns Solanum lycopersicum leaf morphogenesis

E. Bayer, C. Kuhlemeier, Daniel Koenig, 2009, Development.

Long-term balancing selection drives evolution of immunity genes in Capsella

D. Weigel, S. Wright, J. Hagmann, 2018, bioRxiv.

A sister of PIN1 gene in tomato (Solanum lycopersicum) defines leaf and flower organ initiation patterns by maintaining epidermal auxin flux.

Ciera C. Martinez, D. Chitwood, Daniel Koenig, 2016, Developmental biology.

A Sister of PIN1 gene in tomato (Solanum lycopersicum) defines organ initiation patterns by maintaining epidermal auxin flux

Ciera C. Martinez, D. Chitwood, Daniel Koenig, 2016, bioRxiv.

Title: Analysis of allele-specific expression reveals cis-regulatory changes associated with a recent mating system shift and floral adaptation in Capsella Running title: Cis-regulatory evolution in Capsella

Daniel Koenig, D. Scofield, Johan Reimegård, 2015 .

The genome of the stress-tolerant wild tomato species Solanum pennellii

Takayuki Tohge, Fernando Carrari, Hadi Quesneville, 2014, Nature Genetics.

A role for PHANTASTICA in medio-lateral regulation of adaxial domain development in tomato and tobacco leaves.

N. Zoulias, Daniel Koenig, S. McCormick, 2012, Annals of botany.

Evolution of leaf shape: A pattern emerges.

Daniel Koenig, N. Sinha, 2010, Current topics in developmental biology.

LYRATE Is a Key Regulator of Leaflet Initiation and Lamina Outgrowth in Tomato[C][W][OA]

Daniel Koenig, N. Sinha, R. David-Schwartz, 2009, The Plant Cell Online.

Natural Variation in Leaf Morphology Results from Mutation of a Novel KNOX Gene

Daniel Koenig, N. Sinha, S. Kimura, 2008, Current Biology.

Truncation of LEAFY COTYLEDON1 Protein Is Required for Asexual Reproduction in Kalanchoë daigremontiana1[OPEN]

Brad T. Townsley, Daniel Koenig, N. Sinha, 2014, Plant Physiology.

WOX4 promotes procambial development

Daniel Koenig, Jiabing Ji, Josh Strable, 2009 .

Interspecific RNA Interference of SHOOT MERISTEMLESS-Like Disrupts Cuscuta pentagona Plant Parasitism[C][W][OA]

Brad T. Townsley, Daniel Koenig, N. Sinha, 2012, Plant Cell.

The genetic architecture of recurrent segregation distortion in Arabidopsis thaliana

D. Weigel, Daniel Koenig, Danelle K. Seymour, 2017, bioRxiv.

The Fate of Deleterious Variants in a Barley Genomic Prediction Population.

Kevin P. Smith, J. Fay, P. Morrell, 2019, Genetics.

Accurate indel prediction using paired-end short reads

K. Borgwardt, D. Weigel, D. Grimm, 2013, BMC Genomics.

Plant secondary siRNA production determined by microRNA-duplex structure

Detlef Weigel, D. Weigel, Daniel Koenig, 2012, Proceedings of the National Academy of Sciences.

Evolution of DNA Methylation Patterns in the Brassicaceae is Driven by Differences in Genome Organization

D. Weigel, J. Hagmann, Daniel Koenig, 2014, PLoS genetics.

The Fate of Deleterious Variants in a Barley Genomic Prediction Population

Kevin P. Smith, J. Fay, P. Morrell, 2019, Genetics.

Leaf Asymmetry as a Developmental Constraint Imposed by Auxin-Dependent Phyllotactic Patterning[OA]

Cris Kuhlemeier, Aashish Ranjan, Daniel H. Chitwood, 2012, Plant Cell.

Mating system shifts and transposable element evolution in the plant genus Capsella

D. Weigel, S. Wright, Daniel Koenig, 2014, BMC Genomics.

Genetic and morphological differentiation in Washingtonia (Arecaceae): solving a century-old palm mystery

Daniel Koenig, J. Landis, E. Ezcurra, 2021, Botanical Journal of the Linnean Society.

WOX4 Promotes Procambial Development1[W][OA]

Daniel Koenig, Jiabing Ji, Josh Strable, 2009, Plant Physiology.

Cis-Regulatory Changes Associated with a Recent Mating System Shift and Floral Adaptation in Capsella

Douglas G. Scofield, Daniel Koenig, D. Scofield, 2015, bioRxiv.

Analysis of allele-specific expression reveals cis-regulatory changes 2 associated with a recent mating system shift and floral adaptation in Capsella 3 4 Running title : Cis-regulatory evolution in Capsella 5 6

Tanja, Daniel Koenig, D. Scofield, 2015 .

Coordination of leaf development via regulation of KNOX1 genes

Daniel Koenig, N. Sinha, S. Kimura, 2009, Journal of Plant Research.

Transmission ratio distortion is frequent in Arabidopsis thaliana controlled crosses

D. Weigel, Daniel Koenig, Danelle K. Seymour, 2018, Heredity.

A KARRIKIN INSENSITIVE2 paralog in lettuce mediates highly sensitive germination responses to karrikinolide

Daniel Koenig, N. Shabek, Stephanie E. Martinez, 2021, bioRxiv.

Tissue-Speci fi c Silencing of Arabidopsis SU ( VAR ) 3-9 HOMOLOG 8 by miR 171 a * 1 [ W ] [ OA ]

H. Burbano, D. Weigel, I. Rubio-Somoza, 2013 .

Tissue-Specific Silencing of Arabidopsis SU(VAR)3-9 HOMOLOG8 by miR171a*1[W][OA]

H. Burbano, D. Weigel, I. Rubio-Somoza, 2012, Plant Physiology.

The Fate of Deleterious Variants in a Barley Genomic Prediction Population

Kevin P. Smith, Justin C. Fay, J. Fay, 2018, Genetics.

Measuring hidden phenotype: Quantifying the shape of barley seeds using the Euler Characteristic Transform

E. Munch, D. Chitwood, Daniel Koenig, 2021, bioRxiv.