J. Casas-Finet

发表

Decomposing Dynamical Couplings in Mutated scFv Antibody Fragments into Stabilizing and Destabilizing Effects.

D. Jacobs, Azhagiya Singam Ettayapuram Ramaprasad, S. Uddin, 2017, Journal of the American Chemical Society.

Mutations in Antibody Fragments Modulate Allosteric Response Via Hydrogen-Bond Network Fluctuations.

D. Jacobs, D. Livesay, Amit Srivastava, 2016, Biophysical journal.

Investigation of the complexes of EcoRI endonuclease with decanucleotides containing canonical and modified recognition sequences using fluorescence and optical detection of magnetic resonance spectroscopy.

J. Casas-Finet, P. Modrich, N. Jhon, 1988, Biochimica et biophysica acta.

Mammalian heterogeneous ribonucleoprotein A1 and its constituent domains. Nucleic acid interaction, structural stability and self-association.

A. Kumar, R. Karpel, S. H. Wilson, 1993, Journal of molecular biology.

Spectroscopic characterization of the copper(I)‐thiolate cluster in the DNA‐binding domain of yeast ACE1 transcription factor

D. Hamer, R. Karpel, J. Casas-Finet, 1991, FEBS letters.

A systematic multitechnique approach for detection and characterization of reversible self-association during formulation development of therapeutic antibodies.

J. Casas-Finet, H. Sathish, D. Hayes, 2013, Journal of pharmaceutical sciences.

Real‐time DNA binding measurements of the ETSl recombinant oncoproteins reveal significant kinetic differences between the p42 and p51 isoforms

J. Erickson, J. Casas-Finet, R. Fisher, 1994, Protein science : a publication of the Protein Society.

1H NMR (500 MHz) of gene 32 protein--oligonucleotide complexes.

K. Williams, J. Casas-Finet, W. Konigsberg, 1984, Biochemistry.

Role of tryptophan and cysteine in the binding of gene 32 protein from phage T4 to single-stranded DNA. Modification of crucial residues by oxidation with selective free-radical anions

J. Toulmé, J. Casas-Finet, R. Santus, 1984 .

Identification and dynamics of a heparin-binding site in hepatocyte growth factor.

P. Wingfield, S. Stahl, J. Kaufman, 1999, Biochemistry.

HIV-1 nucleocapsid protein as a nucleic acid chaperone: spectroscopic study of its helix-destabilizing properties, structural binding specificity, and annealing activity.

R. Karpel, J. Casas-Finet, M. Urbaneja, 2002, Journal of molecular biology.

Binding properties of the human immunodeficiency virus type 1 nucleocapsid protein p7 to a model RNA: elucidation of the structural determinants for function.

R. Gorelick, J. Casas-Finet, D. Johnson, 1999, Journal of molecular biology.

Universal method for the determination of nonionic surfactant content in the presence of protein

J. Casas-Finet, Ellen O’Connor, P. Cash, 2015, Journal of separation science.

Triplet state properties of tryptophan residues in complexes of mutated Escherichia coli single-stranded DNA binding proteins with single-stranded polynucleotides.

J. W. Chase, J. Casas-Finet, D. Tsao, 1989, Biophysical journal.

A maximum of two tryptophan residues in gene-32 protein from phage T4 undergo stacking interactions with single-stranded polynucleotides.

J. Toulmé, J. Casas-Finet, R. Santus, 1988, European journal of biochemistry.

Investigation of the role of individual tryptophan residues in the binding of Escherichia coli single-stranded DNA binding protein to single-stranded polynucleotides. A study by optical detection of magnetic resonance and site-selected mutagenesis.

J. W. Chase, J. Murphy, J. Casas-Finet, 1987, The Journal of biological chemistry.

SYBR Green I: Fluorescence Properties and Interaction with DNA

M. Schenerman, J. Casas-Finet, C. Geddes, 2012, Journal of Fluorescence.

Bisimidazoacridones: 2. Steady‐state and Time‐resolved Fluorescence Studies of Their Diverse Interactions with DNA ¶ §

J. Casas-Finet, S. Tarasov, C. Michejda, 2003 .

Bisimidazoacridones: 2. Steady-state and Time-resolved Fluorescence Studies of Their Diverse Interactions with DNA¶,§

J. Casas-Finet, S. Tarasov, C. Michejda, 2003, Photochemistry and photobiology.

p10, a low molecular weight single-stranded nucleic acid binding protein of murine leukemia retroviruses, shows stacking interactions of its single tryptophan residue with nucleotide bases.

J. Casas-Finet, N. Jhon, A. Maki, 1988, Biochemistry.

Phosphorescence and optically detected magnetic resonance of HIV-1 nucleocapsid protein complexes with stem-loop sequences of the genomic Psi-recognition element.

J. Casas-Finet, M. Urbaneja, A. Misra, 2001, Biochemistry.

The effect of palmitoylation on the conformation and physical stability of a model peptide hormone.

C. F. van der Walle, S. Uddin, J. Casas-Finet, 2014, International journal of pharmaceutics.

Characterisation of Stress-Induced Aggregate Size Distributions and Morphological Changes of a Bi-Specific Antibody Using Orthogonal Techniques.

C. F. van der Walle, S. Uddin, J. Casas-Finet, 2015, Journal of pharmaceutical sciences.

Fluorescence and nucleic acid binding properties of the human T-cell leukemia virus-type 1 nucleocapsid protein.

J. Casas-Finet, B. Kane, D. Morcock, 2000, Biochimica et biophysica acta.

Characterization of the copper- and silver-thiolate clusters in N-terminal fragments of the yeast ACE1 transcription factor capable of binding to its specific DNA recognition sequence.

D. Hamer, R. Karpel, J. Casas-Finet, 1992, Biochemistry.

Fluorescence and nucleic acid binding properties of bovine leukemia virus nucleocapsid protein.

J. Casas-Finet, B. Kane, D. Morcock, 2002, Biophysical chemistry.

A quantum-mechanical study of metal binding sites in zinc finger structures

J. Erickson, R. Gussio, J. Casas-Finet, 1998 .

Structural basis for the nucleic acid binding cooperativity of bacteriophage T4 gene 32 protein: the (Lys/Arg)3(Ser/Thr)2 (LAST) motif.

R. Karpel, J. Casas-Finet, K. R. Fischer, 1992, Proceedings of the National Academy of Sciences of the United States of America.

Influence of DNA binding on the formation and reactions of tryptophan and tyrosine radicals in peptides and proteins.

J. Toulmé, E. Land, J. Casas-Finet, 1984, International journal of radiation biology and related studies in physics, chemistry, and medicine.

Physical studies of tyrosine and tryptophan residues in mammalian A1 heterogeneous nuclear ribonucleoprotein. Support for a segmented structure.

A. Kumar, R. Karpel, S. H. Wilson, 1991, Journal of molecular biology.

Solution structure by NMR of circulin A: a macrocyclic knotted peptide having anti-HIV activity.

K. Gustafson, M. Boyd, D. Craik, 1999, Journal of molecular biology.

Mechanism of reversible self-association of a monoclonal antibody: role of electrostatic and hydrophobic interactions.

Reza Esfandiary, J. Casas-Finet, H. Sathish, 2015, Journal of pharmaceutical sciences.

Experimental determination and calculations of redox potential descriptors of compounds directed against retroviral zinc fingers: Implications for rational drug design

J. Casas-Finet, E. Chertova, I. Topol, 2001, Protein science : a publication of the Protein Society.

Mammalian DNA polymerase beta: characterization of a 16-kDa transdomain fragment containing the nucleic acid-binding activities of the native enzyme.

A. Kumar, R. Karpel, S. H. Wilson, 1992, Biochemistry.

Nucleic acid binding and chaperone properties of HIV-1 Gag and nucleocapsid proteins

R. Gorelick, J. Casas-Finet, A. Stephen, 2006, Nucleic acids research.

Phosphorescence and optically detected magnetic resonance investigation of the binding of the nucleocapsid protein of the human immunodeficiency virus type 1 and related peptides to RNA.

J. Erickson, J. Casas-Finet, R. Sowder, 1994, Biochemistry.

Reduced Frameshift Fidelity and Processivity of HIV-1 Reverse Transcriptase Mutants Containing Alanine Substitutions in Helix H of the Thumb Subdomain (*)

T. Darden, T. Kunkel, W. Beard, 1995, The Journal of Biological Chemistry.

Characterization of PicoGreen interaction with dsDNA and the origin of its fluorescence enhancement upon binding.

E S Bishop, C. D. Geddes, M. Schenerman, 2010, Biophysical journal.

Sequence-Specific Binding of Human Immunodeficiency Virus Type 1 Nucleocapsid Protein to Short Oligonucleotides

J. Casas-Finet, M. Medaglia, R. Fisher, 1998, Journal of Virology.

Rigidity Emerges during Antibody Evolution in Three Distinct Antibody Systems: Evidence from QSFR Analysis of Fab Fragments

Tong Li, Malgorzata B. Tracka, Shahid Uddin, 2015, PLoS Comput. Biol..

Real-Time BIAcore Measurements of Escherichia coli Single-Stranded DNA Binding (SSB) Protein to Polydeoxythymidylic Acid Reveal Single-State Kinetics with Steric Cooperativity

J. Casas-Finet, R. Fisher, Jose Casas-Finet, 1994 .

Structure/function studies of HIV-1(1) reverse transcriptase: dimerization-defective mutant L289K.

T. Kunkel, S. Stahl, A. Kumar, 1993, Biochemistry.

Wild-type and mutant HIV type 1 nucleocapsid proteins increase the proportion of long cDNA transcripts by viral reverse transcriptase.

J. Drummond, L. Arthur, R. Gorelick, 1997, AIDS research and human retroviruses.

Regulation of in vitro nucleic acid strand annealing activity of heterogeneous nuclear ribonucleoprotein protein A1 by reversible phosphorylation.

A. Kumar, S. H. Wilson, J. Casas-Finet, 1994, Biochemistry.

Metal-enhanced PicoGreen fluorescence: application to fast and ultra-sensitive pg/ml DNA quantitation.

E S Bishop, M. Schenerman, J. Casas-Finet, 2010, Journal of immunological methods.

Metal-enhanced PicoGreen fluorescence: application for double-stranded DNA quantification.

C. D. Geddes, M. Schenerman, J. Casas-Finet, 2010, Analytical biochemistry.

Distance Dependence of Metal-Enhanced Fluorescence

C. D. Geddes, M. Schenerman, J. Casas-Finet, 2012, Plasmonics.

Identification of residues in the single-stranded DNA-binding site of the 8-kDa domain of rat DNA polymerase beta by UV cross-linking.

A. Kumar, S. H. Wilson, J. Casas-Finet, 1993, The Journal of biological chemistry.

Biophysical characterization of influenza virus subpopulations using field flow fractionation and multiangle light scattering: correlation of particle counts, size distribution and infectivity.

Ziping Wei, M. Schenerman, J. Casas-Finet, 2007, Journal of virological methods.

Tryptophan 54 and phenylalanine 60 are involved synergistically in the binding of E. coli SSB protein to single‐stranded polynucleotides

J. W. Chase, J. Casas-Finet, A. Maki, 1987, FEBS letters.

Nucleic Acid Binding Properties of the Simian Immunodeficiency Virus Nucleocapsid Protein NCp8*

J. Casas-Finet, M. Urbaneja, C. McGrath, 2000, The Journal of Biological Chemistry.

An IncY plasmid-encoded single-stranded DNA-binding protein from Escherichia coli shows the identical pattern of stacked tryptophan residues as the chromosomal ssb gene product.

J. W. Chase, J. Casas-Finet, N. Jhon, 1988, European journal of biochemistry.

Binding of recA protein to single- and double-stranded polynucleotides occurs without involvement of its aromatic residues in stacking interactions with nucleotide bases.

J. Casas-Finet, A. Maki, M. Khamis, 1988, Biochimica et biophysica acta.

Stacking interactions of tryptophan residues and nucleotide bases in complexes formed between Escherichia coli single-stranded DNA binding protein and heavy atom-modified poly(uridylic) acid. A study by optically detected magnetic resonance spectroscopy.

J. Casas-Finet, A. Maki, M. Khamis, 1987, The Journal of biological chemistry.

Role of tryptophan 54 in the binding of E. coli single‐stranded DNA‐binding protein to single‐stranded polynucleotides

J. W. Chase, J. Murphy, J. Casas-Finet, 1987, FEBS letters.

Optically detected magnetic resonance of tryptophan residues in complexes formed between a bacterial single-stranded DNA binding protein and heavy atom modified poly(uridylic acid).

J. W. Chase, J. Casas-Finet, A. Maki, 1987, Biochemistry.

Selective photochemical modification by trichloroethanol of tryptophan residues in proteins with a high tyrosine-to-tryptophan ratio.

R. Karpel, S. H. Wilson, J. Casas-Finet, 1992, Analytical biochemistry.

Binding properties of T4 gene 32 protein fragments carrying partially cleaved terminal domains

J. Casas-Finet, 1989, FEBS Letters.

Strategy for Generating Sequence-Defined Aptamer Reagent Sets for Detecting Protein Contaminants in Biotherapeutics.

Andrew T. Csordas, M. Eisenstein, H. Soh, 2018, Analytical chemistry.

Bacteriophage T4 gene 32 protein: modulation of protein-nucleic acid and protein-protein association by structural domains.

R. Karpel, J. Casas-Finet, 1993, Biochemistry.

Spectroscopic studies of the structural domains of mammalian DNA beta-polymerase.

A. Kumar, R. Karpel, S. H. Wilson, 1991, The Journal of biological chemistry.

Characterization of a novel modification to monoclonal antibodies: thioether cross-link of heavy and light chains.

Ziping Wei, M. Schenerman, J. Casas-Finet, 2005, Analytical chemistry.

Characterization of a 32-Residue Peptide From Rat DNA Polymerase β With Single-Stranded DNA-Binding Affinity

Samuel H. Wilson, R. Karpel, J. Casas-Finet, 1994 .

Redistribution of Flexibility in Stabilizing Antibody Fragment Mutants Follows Le Châtelier’s Principle

Malgorzata B. Tracka, Shahid Uddin, Donald J. Jacobs, 2014, PloS one.

Thermodynamic stability and flexibility characteristics of antibody fragment complexes.

Dennis R Livesay, Deeptak Verma, Donald J Jacobs, 2013, Protein and peptide letters.

Metal-enhanced ethidium bromide emission: Application to dsDNA detection

C. D. Geddes, M. Schenerman, J. Casas-Finet, 2009 .

Mammalian heterogeneous nuclear ribonucleoprotein A1. Nucleic acid binding properties of the COOH-terminal domain.

K. Williams, A. Kumar, R. Karpel, 1990, The Journal of biological chemistry.

Characterization of Alternatives to Animal-Derived Raw Materials “ Animal-Free ” May Not Mean “ Problem-Free ”

M. Schenerman, J. Casas-Finet, M. Axley, 2003 .

A systematic multitechnique approach for detection and characterization of reversible self-association during formulation development of therapeutic antibodies.

J. Casas-Finet, H. Sathish, D. Hayes, 2013, Journal of pharmaceutical sciences.

Binding of the nucleocapsid protein of type 1 human immunodeficiency virus to nucleic acids studied using phosphorescence and optically detected magnetic resonance.

J. Q. Wu, J. Casas-Finet, M. Urbaneja, 1997, Biochemistry.

Fluorescence, phosphorescence, and optically detected magnetic resonance studies of the nucleic acid association of the nucleocapsid protein of the murine leukemia virus.

J. Q. Wu, J. Casas-Finet, M. Urbaneja, 1997, Biochemistry.

Identification of a single tryptophan residue as critical for binding activity in a humanized monoclonal antibody against respiratory syncytial virus.

Ziping Wei, Hung-Yu Lin, M. Schenerman, 2007, Analytical chemistry.

Optically detected magnetic resonance of tryptophan residues in Escherichia coli ssb gene product and E. coli plasmid-encoded single-stranded DNA-binding proteins and their complexes with poly(deoxythymidylic) acid.

J. Casas-Finet, A. Maki, P. Ruvolo, 1987, The Journal of biological chemistry.

Characterisation of Stress-Induced Aggregate Size Distributions and Morphological Changes of a Bi-Specific Antibody Using Orthogonal Techniques.

Malgorzata B. Tracka, C. F. van der Walle, S. Uddin, 2015, Journal of pharmaceutical sciences.