C. Mura

发表

An introduction to biomolecular simulations and docking

Charles E. McAnany, C. Mura, 2014, 1407.3752.

Molecular dynamics of a κB DNA element: base flipping via cross-strand intercalative stacking in a microsecond-scale simulation

J. Mccammon, C. Mura, 2008, Nucleic acids research.

Crystal structure and RNA-binding properties of an Hfq homolog from the deep-branching Aquificae: Conservation of the lateral RNA-binding mode

Peter S. Randolph, C. Mura, K. A. Stanek, 2016, bioRxiv.

Interplay of the Bacterial Ribosomal A-Site, S12 Protein Mutations and Paromomycin Binding: A Molecular Dynamics Study

Joanna Trylska, Cameron Mura, Joanna Panecka, 2014, PLoS ONE.

Claws, Disorder, and Conformational Dynamics of the C-Terminal Region of Human Desmoplakin.

Charles E. McAnany, C. Mura, 2015, The journal of physical chemistry. B.

The Structures, Functions, and Evolution of Sm-like Archaeal Proteins (SmAPs)

C. Mura, 2016, 1606.03630.

Structure and function of an archaeal homolog of survival protein E (SurEalpha): an acid phosphatase with purine nucleotide specificity.

David Eisenberg, Cameron Mura, Jonathan E Katz, 2003, Journal of molecular biology.

Crystal structure and RNA-binding properties of an Hfq homolog from the deep-branching Aquificae: conservation of the lateral RNA-binding mode

Peter S. Randolph, C. Mura, K. A. Stanek, 2016, bioRxiv.

A stimuli-responsive, pentapeptide, nanofiber hydrogel for tissue engineering

C. Mura, K. Lampe, James D Tang, 2019, bioRxiv.

Computational Prediction of Potential Inhibitors of the Main Protease of SARS-CoV-2

R. Preissner, P. Bourne, P. Marchetti, 2020, Frontiers in Chemistry.

Oxyanion-mediated inhibition of serine proteases.

C. Mura, L. Williams, K. Jude, 1998, Biochemistry.

Ten Simple Rules for Creating Biomolecular Graphics

Cameron Mura, Colin M. McCrimmon, Michael R. Sawaya, 2014, ArXiv.

Claws, Disorder, and Conformational Dynamics of the C Terminal Region of Human Desmoplakin

Charles E. McAnany, C. Mura, 2015 .

Combining Machine Learning and Agent-Based Modeling to Study Biomedical Systems

S. Peirce, C. Mura, N. Sivakumar, 2022, ArXiv.

Ten simple rules for starting research in your late teens

P. Bourne, C. Mura, Mike Chalupa, 2020, PLoS Comput. Biol..

The Small β-Barrel Domain: A Survey-Based Structural Analysis.

Philippe Youkharibache, Cameron Mura, Stella Veretnik, 2019, Structure.

Archaeal and eukaryotic homologs of Hfq

Peter S. Randolph, A. E. Cozen, C. Mura, 2013, RNA biology.

Archaeal and eukaryotic homologs of Hfq A structural and evolutionary perspective on Sm function

Peter S. Randolph, A. E. Cozen, C. Mura, 2013 .

Deep Generative Models of Protein Structure Uncover Distant Relationships Across a Continuous Fold Space

Eli J. Draizen, P. Bourne, S. Veretnik, 2022, bioRxiv.

Innovations in integrating machine learning and agent-based modeling of biomedical systems

S. Peirce, C. Mura, N. Sivakumar, 2022, Frontiers in Systems Biology.

Binding Site-enhanced Sequence Pretraining and Out-of-cluster Meta-learning Predict Genome-Wide Chemical-Protein Interactions for Dark Proteins

Lei Xie, P. Bourne, Li Xie, 2022, bioRxiv.

The curse of the protein ribbon diagram

Eli J. Draizen, P. Bourne, C. Mura, 2022, PLOS Biology.

Stimuli-Responsive, Pentapeptide, Nanofiber Hydrogel for Tissue Engineering.

C. Mura, K. Lampe, James D Tang, 2019, Journal of the American Chemical Society.

Toward a Designable Extracellular Matrix: Molecular Dynamics Simulations of an Engineered Laminin-Mimetic, Elastin-Like Fusion Protein.

Charles E. McAnany, C. Mura, K. Lampe, 2016, Biomacromolecules.

Deep Learning of Protein Structural Classes: Any Evidence for an ‘Urfold’?

Philip E. Bourne, Cameron Mura, Menuka Jaiswal, 2020, 2020 Systems and Information Engineering Design Symposium (SIEDS).

A Tribute to Phil Bourne—Scientist and Human

C. Mura, Lei Xie, Emma Candelier, 2022, Biomolecules.

Evidence for treatment with estradiol for women with SARS-CoV-2 infection

R. Preissner, P. Bourne, C. Mura, 2020, BMC Medicine.

Three-dimensional structures of fibrillar Sm proteins: Hfq and other Sm-like proteins.

Cameron Mura, Sergio Marco, O. Pellegrini, 2006, Journal of molecular biology.

Supporting Information for Interplay of the bacterial ribosomal A-site , S 12 protein mutations and paromomycin binding : A molecular dynamics study

C. Mura, J. Trylska, Joanna Panecka, 2014 .

The crystal structure of a heptameric archaeal Sm protein: Implications for the eukaryotic snRNP core

D. Eisenberg, M. Sawaya, C. Mura, 2001, Proceedings of the National Academy of Sciences of the United States of America.

IL-13 is a driver of COVID-19 severity

R. Preissner, P. Bourne, G. Buck, 2021, JCI insight.

IL-13 is a driver of COVID-19 severity

R. Preissner, S. Ratcliffe, W. Petri, 2020, medRxiv : the preprint server for health sciences.

Real‐world evidence from over one million COVID‐19 vaccinations is consistent with reactivation of the varicella‐zoster virus

R. Preissner, P. Bourne, C. Mura, 2022, Journal of the European Academy of Dermatology and Venereology : JEADV.

Producing Hfq/Sm Proteins and sRNAs for Structural and Biophysical Studies of Ribonucleoprotein Assembly.

C. Mura, K. A. Stanek, 2018, Methods in molecular biology.

Producing Hfq/Sm Proteins and sRNAs for Structural and Biophysical Studies of Ribonucleoprotein Assembly

C. Mura, K. A. Stanek, 2017, bioRxiv.

RapA, the SWI/SNF subunit of Escherichia coli RNA polymerase, promotes the release of nascent RNA from transcription complexes.

C. Mura, Lin Zhang, M. V. Sukhodolets, 2009, Biochemistry.

Sm‐like protein Hfq: Location of the ATP‐binding site and the effect of ATP on Hfq–RNA complexes

Cameron Mura, Sergio Marco, C. Mura, 2007, Protein science : a publication of the Protein Society.

The Urfold: Structural similarity just above the superfold level?

Philip E. Bourne, Cameron Mura, Stella Veretnik, 2019, bioRxiv.

Prop3D: A flexible, Python-based platform for machine learning with protein structural properties and biophysical data

Eli J. Draizen, P. Bourne, C. Mura, 2022, bioRxiv.

End-to-end sequence-structure-function meta-learning predicts genome-wide chemical-protein interactions for dark proteins

Lei Xie, P. Bourne, Li Xie, 2023, PLoS Comput. Biol..

Structure and assembly of an augmented Sm-like archaeal protein 14-mer

D. Eisenberg, C. Mura, M. Phillips, 2003, Proceedings of the National Academy of Sciences of the United States of America.

An Introduction to Programming for Bioscientists: A Python-Based Primer

Berk Ekmekci, Cameron Mura, Charles E. McAnany, 2016, PLoS Comput. Biol..

The oligomerization and ligand‐binding properties of Sm‐like archaeal proteins (SmAPs)

D. Eisenberg, C. Mura, M. Phillips, 2003, Protein science : a publication of the Protein Society.

A Comparative Analysis of COVID-19 Vaccines Based on over 580,000 Cases from the Vaccination Adverse Event Reporting System

A. Goede, R. Preissner, Kathleen Gallo, 2022, Vaccines.

A Birds-Eye (Re)View of Acid-Suppression Drugs, COVID-19, and the Highly Variable Literature

R. Preissner, P. Bourne, C. Mura, 2021, Frontiers in Pharmacology.

Exploration of Dark Chemical Genomics Space via Portal Learning: Applied to Targeting the Undruggable Genome and COVID-19 Anti-Infective Polypharmacology

Philip E. Bourne, Cameron Mura, Lei Xie, 2021, Research square.

Structural biology meets data science: does anything change?

Cameron Mura, Eli J Draizen, Philip E Bourne, 2018, Current opinion in structural biology.

Clinical Evidence for Improved Outcomes with Histamine Antagonists and Aspirin in 22,560 COVID-19 Patients

R. Preissner, P. Bourne, M. Heiland, 2021, medRxiv.

Rapid colorimetric assays to qualitatively distinguish RNA and DNA in biomolecular samples.

C. Mura, J. Patterson, 2013, Journal of visualized experiments : JoVE.

Deep Generative Models of Protein Structure Uncover Distant Relationships Across a Continuous Fold Space

Eli J. Draizen, P. Bourne, S. Veretnik, 2023, bioRxiv.

Known structure, unknown function: An inquiry‐based undergraduate biochemistry laboratory course

Linda Columbus, Cameron Mura, Charles E. McAnany, 2015, Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology.

An Introduction to Biomolecular Graphics

Colin M. McCrimmon, M. Sawaya, C. Mura, 2010, PLoS Comput. Biol..

Explainable Deep Generative Models, Ancestral Fragments, and Murky Regions of the Protein Structure Universe

Eli J. Draizen, P. Bourne, C. Mura, 2022, bioRxiv.

Molecular dynamics of potential rRNA binders: single-stranded nucleic acids and some analogues.

C. Mura, J. Trylska, Joanna Panecka, 2011, The journal of physical chemistry. B.

Real‐world evidence for preventive effects of statins on cancer incidence: A trans‐Atlantic analysis

R. Preissner, P. Bourne, Joe D. Lewis, 2021, medRxiv.

Structure of a Nudix protein from Pyrobaculum aerophilum reveals a dimer with two intersubunit beta-sheets.

David Eisenberg, Cameron Mura, Duilio Cascio, 2002, Acta crystallographica. Section D, Biological crystallography.

Ten quick tips for using a Raspberry Pi

Cameron Mura, Anthony C. Fletcher, Anthony C Fletcher, 2018, PLoS Comput. Biol..

Ten Simple Rules for Using a Raspberry Pi pdf

Cameron Mura, Anthony C. Fletcher, C. Mura, 2018, ArXiv.

Machine Learning for Classification of Protein Helix Capping Motifs

Philip E. Bourne, Cameron Mura, Ke Wang, 2019, 2019 Systems and Information Engineering Design Symposium (SIEDS).

Real-world evidence for improved outcomes with histamine antagonists and aspirin in 22,560 COVID-19 patients

R. Preissner, P. Bourne, M. Heiland, 2021, Signal Transduction and Targeted Therapy.

IL-13 is a driver of COVID-19 severity

R. Preissner, S. Ratcliffe, W. Petri, 2020, medRxiv.

Molecular dynamics of a κB DNA element: base flipping via cross-strand intercalative stacking in a microsecond-scale simulation

C. Mura, J. McCammon, 2008, Nucleic acids research.

Claws, Disorder, and Conformational Dynamics of the C-Terminal Region of Human Desmoplakin.

Charles E. McAnany, C. Mura, 2015, The journal of physical chemistry. B.

Combining Machine Learning and Agent-Based Modeling to Study Biomedical Systems

S. Peirce, C. Mura, N. Sivakumar, 2022, ArXiv.

An Introduction to Programming for Bioscientists: A Python-Based Primer

Charles E. McAnany, C. Mura, Berk Ekmekci, 2016, PLoS Comput. Biol..

Abstractions, Algorithms and Data Structures for Structural Bioinformatics in PyCogent

C. Mura, Z. Derewenda, Marcin Cieslik, 2014, Journal of applied crystallography.